Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002738

Physical Location & Seq

Genomic Coordinates Forward (+)

51839807 .. 51846247

Gene Structure 6441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG366700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAGGACTCTTCGGAAATACTACTAAACTCACTACAAAACTCTGGCGTTCAGGTCCCCTACGACGTGTCATCTGTCCGAGACCTCACGCCGGCCACTTTAGTCTCAATCACAGCCAGTCCCTCAACCTCATCACCTAAACGTCGTCGTTTCCGACCTTACTTCCCGTTTCCTCCATTGCTAACCAGTTCAACGATCAACAGCCTTGGCTACCCTAGCGACGTGAGCTTCCACAAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF812

Protein Analysis

80

Amino Acids

8.79

Weight (kDa)

8.16

Isoelectric Point (pI)

91.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55830 AT1G55830 AT1G55830
fragaria_vesca	FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411
malus_domestica	MD03G1032000.v1.1 MD03G1032400.v1.1 MD11G1036100.v1.1
prunus_persica	Prupe.6G026900_v2.0.a1 Prupe.6G026900_v2.0.a1
pyrus_communis	pycom11g02980
rosa_chinensis	RchiOBHm_Chr5g0075911
rosa_laevigata	RLG00000009357 RLG00000036601
rosa_multiflora	Rmu_sc0002652.1_g000017
rosa_roxburghii	Rroxscaffold_1G00005770 Rroxscaffold_3G00229030 Rroxscaffold_4G00290220 Rroxscaffold_4G00331910
rosa_rugosa	Rorug01G0374500 Rorug05G0443700 Rorug05G0443800 Rorug05G0443900
rosa_samantha	Rh1BG347000 Rh2DG366700 Rh5AG500500 Rh5BG521600 Rh5CG545600 Rh5DG534400
rosa_wichuraiana	Rw5G046450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	192
AjiI	CACGTC	2 cut(s)	67, 223
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	75, 109
AoxI	GGCC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	75, 109
BfaI	CTAG	2 cut(s)	216, 241
Bme18I	GGWCC	1 cut(s)	55
BmgBI	CACGTC	2 cut(s)	67, 223
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	117, 186
Bse3DI	GCAATG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	117, 186
BshFI	GGCC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	41, 105
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	75, 109
BsmFI	GGGAC	2 cut(s)	41, 105
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	117, 186
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	2 cut(s)	75, 109
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 225
BsuRI	GGCC	1 cut(s)	95
BtrI	CACGTC	2 cut(s)	67, 223
Cac8I	GCNNGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	55
CviJI	RGCY	5 cut(s)	95, 116, 204, 210, 228
CviKI_1	RGCY	5 cut(s)	95, 116, 204, 210, 228
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaqI	GGGAC	2 cut(s)	41, 105
FspBI	CTAG	2 cut(s)	216, 241
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	92
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	126
Hpy188I	TCNGA	3 cut(s)	16, 80, 155
Hpy99I	CGWCG	4 cut(s)	68, 147, 150, 224
HpyCH4IV	ACGT	3 cut(s)	66, 142, 222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 225
HpySE526I	ACGT	3 cut(s)	66, 142, 222
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	195
LpnPI	CCDG	5 cut(s)	30, 38, 105, 130, 199
MaeI	CTAG	2 cut(s)	216, 241
MaeII	ACGT	3 cut(s)	66, 142, 222
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	1 cut(s)	3
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	4 cut(s)	95, 133, 139, 183
MroNI	GCCGGC	1 cut(s)	91
MspI	CCGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	216, 225
NaeI	GCCGGC	1 cut(s)	93
NdeII	GATC	1 cut(s)	195
NgoMIV	GCCGGC	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PdiI	GCCGGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	2
SinI	GGWCC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	216, 241
StyI	CCWWGG	1 cut(s)	205
TaiI	ACGT	3 cut(s)	69, 145, 225
VpaK11BI	GGWCC	1 cut(s)	55
XspI	CTAG	2 cut(s)	216, 241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.