Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002738

Physical Location & Seq

Genomic Coordinates Reverse (-)

51463656 .. 51464907

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAGATGAGAGAGGGGAAGAAGAAGAGGTTAAAAGAAAAGAGAGTTGGTTCGATCAAGTCGAGCTTACCTGGTCTGAATTCGACGATGACGAACTCTGAGGCTGTCGACGACATCGTCTCATCCAAAAACAAAATGGAAGGCTCGCCAGAAACATCCCTAAACTCGCTTCAGAAATCCGGCCGGCCAATTTCGTCTCGATCTGCGGCCAGTCCCTCAACCTCATCGCCTAAACGTCATCGTTTCCGATCGAACTTCCTGATTCCTCCATCGCCAACCAGTTCAACAGCCTCGGCTACTCTAGCGAAGCGAGCTTCCACAAGGTACAGAATCGAGAAATTGGGGCATCCATCTCTTCACGTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.27

Weight (kDa)

11.04

Isoelectric Point (pI)

65.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55830 AT1G55830 AT1G55830
fragaria_vesca	FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411
malus_domestica	MD03G1032000.v1.1 MD03G1032400.v1.1 MD11G1036100.v1.1
prunus_persica	Prupe.6G026900_v2.0.a1 Prupe.6G026900_v2.0.a1
pyrus_communis	pycom11g02980
rosa_chinensis	RchiOBHm_Chr5g0075911
rosa_laevigata	RLG00000009357 RLG00000036601
rosa_multiflora	Rmu_sc0002652.1_g000017
rosa_roxburghii	Rroxscaffold_1G00005770 Rroxscaffold_3G00229030 Rroxscaffold_4G00290220 Rroxscaffold_4G00331910
rosa_rugosa	Rorug01G0374500 Rorug05G0443700 Rorug05G0443800 Rorug05G0443900
rosa_samantha	Rh1BG347000 Rh2DG366700 Rh5AG500500 Rh5BG521600 Rh5CG545600 Rh5DG534400
rosa_wichuraiana	Rw5G046450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	1 cut(s)	206
AcoI	YGGCCR	3 cut(s)	181, 185, 207
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	285
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	2 cut(s)	66, 314
AluI	AGCT	2 cut(s)	66, 314
Alw26I	GTCTC	2 cut(s)	124, 201
AoxI	GGCC	3 cut(s)	181, 185, 207
ApoI	RAATTY	1 cut(s)	79
BccI	CCATC	2 cut(s)	277, 358
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	124, 201
BfaI	CTAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	72
BmgBI	CACGTC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	291
Bse118I	RCCGGY	1 cut(s)	183
Bse1I	ACTGG	2 cut(s)	210, 279
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	3 cut(s)	122, 155, 346
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	210, 279
BseX3I	CGGCCG	1 cut(s)	181
Bsh1285I	CGRYCG	2 cut(s)	184, 251
BshFI	GGCC	3 cut(s)	183, 187, 209
BsiEI	CGRYCG	2 cut(s)	184, 251
BsiSI	CCGG	2 cut(s)	180, 184
BslFI	GGGAC	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	124, 201
BsmBI	CGTCTC	2 cut(s)	124, 201
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	3 cut(s)	183, 187, 209
Bsp143I	GATC	3 cut(s)	54, 200, 248
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	3 cut(s)	183, 187, 209
BspCNI	CTCAG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	210, 279
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	3 cut(s)	54, 200, 248
Bst2UI	CCWGG	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	20, 360
BstC8I	GCNNGC	3 cut(s)	146, 185, 312
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	122, 155, 346
BstKTI	GATC	3 cut(s)	57, 203, 251
BstMAI	GTCTC	2 cut(s)	124, 201
BstMBI	GATC	3 cut(s)	54, 200, 248
BstMCI	CGRYCG	2 cut(s)	184, 251
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 311
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstZI	CGGCCG	1 cut(s)	181
BsuRI	GGCC	3 cut(s)	183, 187, 209
BtgZI	GCGATG	2 cut(s)	210, 255
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	122, 155, 346
Cac8I	GCNNGC	3 cut(s)	146, 185, 312
Cfr10I	RCCGGY	1 cut(s)	183
CsiI	ACCWGGT	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	325
CviJI	RGCY	9 cut(s)	66, 104, 144, 183, 187, 209, 290, 296, 314
CviKI_1	RGCY	9 cut(s)	66, 104, 144, 183, 187, 209, 290, 296, 314
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	3 cut(s)	56, 202, 250
DpnII	GATC	3 cut(s)	54, 200, 248
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	3 cut(s)	181, 185, 207
EagI	CGGCCG	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	20, 360
EarI	CTCTTC	2 cut(s)	20, 360
EclXI	CGGCCG	1 cut(s)	181
Eco52I	CGGCCG	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	70
Esp3I	CGTCTC	2 cut(s)	124, 201
FaiI	YATR	1 cut(s)	367
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FaqI	GGGAC	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	3 cut(s)	109, 142, 333
FseI	GGCCGGCC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	183, 187, 209
HapII	CCGG	2 cut(s)	180, 184
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	2 cut(s)	262, 330
HpaII	CCGG	2 cut(s)	180, 184
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	78, 100, 174, 248
Hpy188III	TCNNGA	3 cut(s)	198, 259, 334
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	2 cut(s)	88, 113
HpyAV	CCTTC	1 cut(s)	134
HpyCH4IV	ACGT	2 cut(s)	235, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 311
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	2 cut(s)	235, 360
KroI	GCCGGC	1 cut(s)	183
KroNI	GCCGGC	1 cut(s)	185
Kzo9I	GATC	3 cut(s)	54, 200, 248
LpnPI	CCDG	8 cut(s)	57, 84, 162, 193, 197, 223, 272, 292
LweI	GCATC	1 cut(s)	355
MabI	ACCWGGT	1 cut(s)	70
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	2 cut(s)	235, 360
MalI	GATC	3 cut(s)	56, 202, 250
MboI	GATC	3 cut(s)	54, 200, 248
MboII	GAAGA	4 cut(s)	31, 34, 37, 347
MluCI	AATT	3 cut(s)	79, 189, 338
MnlI	CCTC	7 cut(s)	7, 21, 94, 226, 232, 276, 301
MroNI	GCCGGC	1 cut(s)	183
MseI	TTAA	1 cut(s)	32
MspI	CCGG	2 cut(s)	180, 184
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	302, 311
NaeI	GCCGGC	1 cut(s)	185
NdeII	GATC	3 cut(s)	54, 200, 248
NgoMIV	GCCGGC	1 cut(s)	183
NmeAIII	GCCGAG	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	3 cut(s)	59, 89, 114
PdiI	GCCGGC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	262, 330
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	208
Ple19I	CGATCG	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	116
PvuI	CGATCG	1 cut(s)	251
RigI	GGCCGGCC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	3 cut(s)	54, 200, 248
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	8 cut(s)	32, 68, 73, 224, 238, 316, 326, 363
SexAI	ACCWGGT	1 cut(s)	70
SfaNI	GCATC	1 cut(s)	355
Sse9I	AATT	3 cut(s)	79, 189, 338
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	70
TaiI	ACGT	2 cut(s)	238, 363
TaqI	TCGA	7 cut(s)	53, 62, 83, 108, 199, 251, 333
TasI	AATT	3 cut(s)	79, 189, 338
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	262, 330
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
Tth111I	GACNNNGTC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.