Rw5G046450

Coiled-coil domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
80590215 .. 80592719
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046450.1

Sequence Viewer

Length: 1374 bp
ATGGAACGCTCGCCGGAAATACTGCTGAACTCGCTCCACAACTCCGGCGTTCGGGTCCCCTACGACGTGTCGTCCGTCCGAGACCTCACGCCGGCCACTTTAGTCTCGATCTGCGGCCAGTCCCTCAACCTCATCGCCCAAACCTCGTCGTTTCCGACCTCGCTCCCCGATTCCTCCGTCGCCGACCAGTTCAACGTCTGTATGGACATGGCTTCCGGGATCAACAGCCTCGGCTACCCCGGCGACGTGAGCTTCCACAAGTTCTTGTATCCATCTGAAGAGGACTCGTGTAAGTTGGTAAGGTTCTTGGTGGAGAGGCTTTCGGAGTCGTCCGGGAGTGGAAGCAGGGGTGGTGTCGAGGGTGTTGAGGATGTGGAGAGAGTGAAAGAAGATAGCTTTGAAAGCAATGTGGGGAACCACAGAAGCGGTGATGACAGACTTGGACCGAAATGGGATGAATTCACATTGAATGGTGAAGAGCCTGAAGTATTGAACATTGAGGGTGAAGATGCCTCTGTCGGTTTCTTTTACTGCATAAGATATAGAAGTAAAATAATTAAACCTCAGGAGAAACAGCTTGAGGAGGAGGTGATGGCAAAGACTTCAGAATTGAAGCACCTTGAAGAAGAGTTGGAATTGTTAAAAGAAGCAGTAGATATAGCATTTGATGTCGATCATCCCGCTGAATTTTACCTTGAGAAACTTAATCAGCAAGTGGATGCTCAAAGGCAACACCTTGGAGAATTGAAGTCACAGCAGGAAGTTGTCAGAAGGCCTTTGGAAGAGAAGAGGAGAACTCTTCTGGAGACTCTGTCTGCAGATAACCCAGATGCTAAGAAAAAGCTCCAAAAGCTGAAACAGCTTGAAGTGGAAAAGGAATCCATGTTAGCTTCAATTCGAAAAAGGGAGGAGGAACTTTCTCAACTTACTATGGATCTAGAGAAGCAGCCCAAACTGGCATCAAGGAGATCTTATATTGAAAGGGTCAAAGAGATCACAAAAAATAGTCGGAAGCAAGAAGCTGACATAGAGCAGATTTTAAAGGACACCAGGGAGCTTCAGTTAGAGAGTAATTCTATTCAAGAACGCCTCCATCGGACATATGCTGTTGTAGATGAGCTTGTTTTCAGGGAAGCAAAGAAAGATGCAGTAGGGAGGCAGGCTTATAGGCTCCTCACTAGCATCCACGAGAGCTTTGAACAAATTCGTGAGAAAATCCTGGCAACTGATAGATTACGTCGAGAAGCGACTGAACATGAAAAGAAGCTAGCAGCCATGGCTTCACGGAGCTTAAATGCAGACAAACTACAAGCAGATCTTGAGGTCATTAGGAGAGAGAATGAGTACCTAGAGAAATCTCTCCAGGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

457

Amino Acids

52.38

Weight (kDa)

5.19

Isoelectric Point (pI)

59.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC22_N PF21674 1 - 108 3.1e-30 CCDC22 protein N-terminal domain
CCDC22_CC PF05667 189 - 425 7e-49 CCDC22 protein coiled-coil region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 114, 426, 681
AclWI GGATC 2 cut(s) 227, 942
AcoI YGGCCR 2 cut(s) 93, 115
AcsI RAATTY 3 cut(s) 458, 686, 1203
AcuI CTGAAG 4 cut(s) 297, 504, 588, 1043
AfaI GTAC 1 cut(s) 1346
AfiI CCNNNNNNNGG 2 cut(s) 51, 91
AflIII ACRYGT 1 cut(s) 66
AhdI GACNNNNNGTC 1 cut(s) 70
AjiI CACGTC 2 cut(s) 67, 247
AjnI CCWGG 3 cut(s) 1049, 1218, 1362
Alw26I GTCTC 3 cut(s) 75, 109, 800
AlwI GGATC 2 cut(s) 227, 942
AoxI GGCC 3 cut(s) 93, 115, 773
ApeKI GCWGC 2 cut(s) 946, 1271
ApoI RAATTY 3 cut(s) 458, 686, 1203
Asp700I GAANNNNTTC 1 cut(s) 1203
AspS9I GGNCC 2 cut(s) 55, 443
AsuC2I CCSGG 3 cut(s) 217, 240, 334
AsuHPI GGTGA 4 cut(s) 440, 485, 515, 601
AsuII TTCGAA 1 cut(s) 898
AsuNHI GCTAGC 1 cut(s) 1267
AvaII GGWCC 2 cut(s) 55, 443
AxyI CCTNAGG 1 cut(s) 564
BauI CACGAG 2 cut(s) 286, 1187
BbvI GCAGC 2 cut(s) 958, 1283
BccI CCATC 3 cut(s) 280, 586, 1101
BciT130I CCWGG 3 cut(s) 1051, 1220, 1364
BciVI GTATCC 1 cut(s) 279
BcnI CCSGG 3 cut(s) 217, 240, 334
BcoDI GTCTC 3 cut(s) 75, 109, 800
BfaI CTAG 4 cut(s) 938, 1179, 1268, 1349
BfmI CTRYAG 1 cut(s) 816
BfuI GTATCC 1 cut(s) 279
BglII AGATCT 2 cut(s) 968, 1315
BisI GCNGC 3 cut(s) 115, 947, 1272
BlsI GCNGC 3 cut(s) 116, 948, 1273
Bme1390I CCNGG 6 cut(s) 217, 240, 334, 1051, 1220, 1364
Bme18I GGWCC 2 cut(s) 55, 443
BmeRI GACNNNNNGTC 1 cut(s) 70
BmgBI CACGTC 2 cut(s) 67, 247
BmgT120I GGNCC 2 cut(s) 55, 443
BmiI GGNNCC 4 cut(s) 56, 57, 416, 1172
BmrFI CCNGG 6 cut(s) 217, 240, 334, 1051, 1220, 1364
BmsI GCATC 6 cut(s) 499, 709, 820, 968, 1135, 1191
BmtI GCTAGC 1 cut(s) 1271
BplI GAGNNNNNCTC 2 cut(s) 781, 813
BpmI CTGGAG 2 cut(s) 824, 1346
Bpu14I TTCGAA 1 cut(s) 898
BpuEI CTTGAG 3 cut(s) 599, 716, 1340
BpuMI CCSGG 3 cut(s) 217, 240, 334
BsaBI GATNNNNATC 1 cut(s) 672
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 5 cut(s) 229, 238, 736, 1050, 1275
BsaXI ACNNNNNCTCC 4 cut(s) 797, 827, 1046, 1076
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 91
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 3 cut(s) 118, 187, 960
Bse21I CCTNAGG 1 cut(s) 564
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 3 cut(s) 1051, 1220, 1364
BseDI CCNNGG 5 cut(s) 229, 238, 736, 1050, 1275
BseGI GGATG 5 cut(s) 376, 460, 676, 724, 1182
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 51, 91
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 3 cut(s) 118, 187, 960
BseRI GAGGAG 5 cut(s) 596, 599, 805, 923, 1163
BseXI GCAGC 2 cut(s) 958, 1283
BshFI GGCC 3 cut(s) 95, 117, 775
BsiSI CCGG 6 cut(s) 14, 45, 92, 216, 240, 333
BslFI GGGAC 2 cut(s) 41, 106
BslI CCNNNNNNNGG 2 cut(s) 51, 91
BsmAI GTCTC 3 cut(s) 75, 109, 800
BsmFI GGGAC 2 cut(s) 41, 106
BsnI GGCC 3 cut(s) 95, 117, 775
Bso31I GGTCTC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 898
Bsp143I GATC 7 cut(s) 108, 219, 673, 934, 968, 993, 1315
Bsp19I CCATGG 1 cut(s) 1275
BspACI CCGC 3 cut(s) 114, 426, 681
BspANI GGCC 3 cut(s) 95, 117, 775
BspCNI CTCAG 1 cut(s) 577
BspLI GGNNCC 4 cut(s) 56, 57, 416, 1172
BspMAI CTGCAG 1 cut(s) 820
BspOI GCTAGC 1 cut(s) 1271
BspPI GGATC 2 cut(s) 227, 942
BspQI GCTCTTC 1 cut(s) 471
BspT104I TTCGAA 1 cut(s) 898
BspTNI GGTCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 3 cut(s) 118, 187, 960
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 5 cut(s) 229, 238, 736, 1050, 1275
BssMI GATC 7 cut(s) 108, 219, 673, 934, 968, 993, 1315
BssSI CACGAG 2 cut(s) 286, 1187
BssT1I CCWWGG 2 cut(s) 736, 1275
Bst2BI CACGAG 2 cut(s) 286, 1187
Bst2UI CCWGG 3 cut(s) 1051, 1220, 1364
Bst6I CTCTTC 6 cut(s) 273, 471, 621, 777, 782, 804
BstBI TTCGAA 1 cut(s) 898
BstC8I GCNNGC 4 cut(s) 11, 93, 1161, 1269
BstDEI CTNAG 2 cut(s) 564, 834
BstDSI CCRYGG 1 cut(s) 1275
BstF5I GGATG 5 cut(s) 376, 460, 676, 724, 1182
BstKTI GATC 7 cut(s) 111, 222, 676, 937, 971, 996, 1318
BstMAI GTCTC 3 cut(s) 75, 109, 800
BstMBI GATC 7 cut(s) 108, 219, 673, 934, 968, 993, 1315
BstMWI GCNNNNNNNGC 7 cut(s) 31, 240, 249, 402, 850, 859, 1277
BstNI CCWGG 3 cut(s) 1051, 1220, 1364
BstSCI CCNGG 6 cut(s) 215, 238, 332, 1049, 1218, 1362
BstSFI CTRYAG 1 cut(s) 816
BstV1I GCAGC 2 cut(s) 958, 1283
BstX2I RGATCY 3 cut(s) 934, 968, 1315
BstYI RGATCY 3 cut(s) 934, 968, 1315
Bsu36I CCTNAGG 1 cut(s) 564
BsuI GTATCC 1 cut(s) 279
BsuRI GGCC 3 cut(s) 95, 117, 775
BtgI CCRYGG 1 cut(s) 1275
BtgZI GCGATG 1 cut(s) 118
BtrI CACGTC 2 cut(s) 67, 247
BtsCI GGATG 5 cut(s) 376, 460, 676, 724, 1182
Cac8I GCNNGC 4 cut(s) 11, 93, 1161, 1269
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 55, 443
Csp6I GTAC 1 cut(s) 1345
CviAII CATG 4 cut(s) 208, 883, 1256, 1276
CviQI GTAC 1 cut(s) 1345
DdeI CTNAG 2 cut(s) 564, 834
DpnI GATC 7 cut(s) 110, 221, 675, 936, 970, 995, 1317
DpnII GATC 7 cut(s) 108, 219, 673, 934, 968, 993, 1315
DraI TTTAAA 1 cut(s) 1041
DriI GACNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 6 cut(s) 273, 471, 621, 777, 782, 804
Eam1105I GACNNNNNGTC 1 cut(s) 70
EarI CTCTTC 6 cut(s) 273, 471, 621, 777, 782, 804
Eco130I CCWWGG 2 cut(s) 736, 1275
Eco147I AGGCCT 1 cut(s) 775
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 55, 443
Eco57I CTGAAG 4 cut(s) 297, 504, 588, 1043
Eco81I CCTNAGG 1 cut(s) 564
EcoO109I RGGNCCY 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 3 cut(s) 1049, 1218, 1362
EcoT14I CCWWGG 2 cut(s) 736, 1275
ErhI CCWWGG 2 cut(s) 736, 1275
FaeI CATG 4 cut(s) 211, 886, 1259, 1279
FalI AAGNNNNNCTT 4 cut(s) 955, 987, 1302, 1334
FaqI GGGAC 2 cut(s) 41, 106
FatI CATG 4 cut(s) 207, 882, 1255, 1275
FauI CCCGC 1 cut(s) 688
FauNDI CATATG 1 cut(s) 1102
Fnu4HI GCNGC 3 cut(s) 115, 947, 1272
FokI GGATG 5 cut(s) 383, 467, 663, 731, 1169
Fsp4HI GCNGC 3 cut(s) 115, 947, 1272
FspBI CTAG 4 cut(s) 938, 1179, 1268, 1349
GluI GCNGC 3 cut(s) 115, 947, 1272
GsuI CTGGAG 2 cut(s) 824, 1346
HaeIII GGCC 3 cut(s) 95, 117, 775
HapII CCGG 6 cut(s) 14, 45, 92, 216, 240, 333
Hin1II CATG 4 cut(s) 211, 886, 1259, 1279
HinfI GANTC 5 cut(s) 170, 284, 326, 808, 878
HpaII CCGG 6 cut(s) 14, 45, 92, 216, 240, 333
HphI GGTGA 4 cut(s) 440, 485, 515, 601
Hpy188I TCNGA 8 cut(s) 80, 156, 277, 325, 607, 770, 1011, 1098
Hpy188III TCNNGA 8 cut(s) 106, 566, 803, 938, 1082, 1208, 1241, 1319
Hpy99I CGWCG 5 cut(s) 68, 151, 182, 248, 1242
HpyAV CCTTC 1 cut(s) 765
HpyCH4IV ACGT 4 cut(s) 66, 195, 246, 1237
HpyCH4V TGCA 4 cut(s) 534, 818, 1148, 1298
HpyF10VI GCNNNNNNNGC 7 cut(s) 31, 240, 249, 402, 850, 859, 1277
HpyF3I CTNAG 2 cut(s) 564, 834
HpySE526I ACGT 4 cut(s) 66, 195, 246, 1237
Hsp92II CATG 4 cut(s) 211, 886, 1259, 1279
KflI GGGWCCC 1 cut(s) 55
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Kzo9I GATC 7 cut(s) 108, 219, 673, 934, 968, 993, 1315
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 6 cut(s) 39, 168, 849, 1054, 1176, 1287
Lsp1109I GCAGC 2 cut(s) 958, 1283
LweI GCATC 6 cut(s) 499, 709, 820, 968, 1135, 1191
MaeI CTAG 4 cut(s) 938, 1179, 1268, 1349
MaeII ACGT 4 cut(s) 66, 195, 246, 1237
MaeIII GTNAC 1 cut(s) 750
MalI GATC 7 cut(s) 110, 221, 675, 936, 970, 995, 1317
MboI GATC 7 cut(s) 108, 219, 673, 934, 968, 993, 1315
MboII GAAGA 9 cut(s) 290, 401, 488, 518, 635, 638, 791, 794, 799
MflI RGATCY 3 cut(s) 934, 968, 1315
MluCI AATT 9 cut(s) 458, 555, 608, 635, 686, 743, 894, 1072, 1203
MlyI GAGTC 3 cut(s) 278, 335, 802
MmeI TCCRAC 3 cut(s) 179, 612, 989
MroNI GCCGGC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 1203
MseI TTAA 5 cut(s) 558, 641, 705, 1040, 1292
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 6 cut(s) 14, 45, 92, 216, 240, 333
MspR9I CCNGG 6 cut(s) 217, 240, 334, 1051, 1220, 1364
MvaI CCWGG 3 cut(s) 1051, 1220, 1364
MwoI GCNNNNNNNGC 7 cut(s) 31, 240, 249, 402, 850, 859, 1277
NaeI GCCGGC 1 cut(s) 93
NciI CCSGG 3 cut(s) 217, 240, 334
NcoI CCATGG 1 cut(s) 1275
NdeI CATATG 1 cut(s) 1102
NdeII GATC 7 cut(s) 108, 219, 673, 934, 968, 993, 1315
NgoMIV GCCGGC 1 cut(s) 91
NheI GCTAGC 1 cut(s) 1267
NlaIII CATG 4 cut(s) 211, 886, 1259, 1279
NlaIV GGNNCC 4 cut(s) 56, 57, 416, 1172
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 750
NspV TTCGAA 1 cut(s) 898
PceI AGGCCT 1 cut(s) 775
PciSI GCTCTTC 1 cut(s) 471
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 152
PdiI GCCGGC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 1203
PfeI GAWTC 2 cut(s) 170, 878
PflFI GACNNNGTC 1 cut(s) 811
PfoI TCCNGGA 3 cut(s) 215, 332, 1362
PkrI GCNGC 3 cut(s) 116, 948, 1273
PleI GAGTC 3 cut(s) 278, 334, 802
PpsI GAGTC 3 cut(s) 278, 334, 802
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 3 cut(s) 1049, 1218, 1362
PspGI CCWGG 3 cut(s) 1049, 1218, 1362
PspN4I GGNNCC 4 cut(s) 56, 57, 416, 1172
PspPI GGNCC 2 cut(s) 55, 443
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 820
PsuI RGATCY 3 cut(s) 934, 968, 1315
PsyI GACNNNGTC 1 cut(s) 811
RsaI GTAC 1 cut(s) 1346
RsaNI GTAC 1 cut(s) 1345
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 5 cut(s) 558, 641, 705, 1040, 1292
SatI GCNGC 3 cut(s) 115, 947, 1272
Sau3AI GATC 7 cut(s) 108, 219, 673, 934, 968, 993, 1315
Sau96I GGNCC 2 cut(s) 55, 443
SchI GAGTC 3 cut(s) 278, 335, 802
ScrFI CCNGG 6 cut(s) 217, 240, 334, 1051, 1220, 1364
SfaNI GCATC 6 cut(s) 499, 709, 820, 968, 1135, 1191
SfcI CTRYAG 1 cut(s) 816
SfuI TTCGAA 1 cut(s) 898
SinI GGWCC 2 cut(s) 55, 443
SmlI CTYRAG 3 cut(s) 578, 695, 1319
SmoI CTYRAG 3 cut(s) 578, 695, 1319
Sse9I AATT 9 cut(s) 458, 555, 608, 635, 686, 743, 894, 1072, 1203
SseBI AGGCCT 1 cut(s) 775
SsiI CCGC 3 cut(s) 114, 426, 681
SspMI CTAG 4 cut(s) 938, 1179, 1268, 1349
StuI AGGCCT 1 cut(s) 775
StyD4I CCNGG 6 cut(s) 215, 238, 332, 1049, 1218, 1362
StyI CCWWGG 2 cut(s) 736, 1275
TaiI ACGT 4 cut(s) 69, 198, 249, 1240
TaqI TCGA 5 cut(s) 107, 357, 672, 898, 1240
TaqII GACCGA 1 cut(s) 460
TasI AATT 9 cut(s) 458, 555, 608, 635, 686, 743, 894, 1072, 1203
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 2 cut(s) 170, 878
Tru1I TTAA 5 cut(s) 558, 641, 705, 1040, 1292
Tru9I TTAA 5 cut(s) 558, 641, 705, 1040, 1292
TseFI GTSAC 1 cut(s) 750
TseI GCWGC 2 cut(s) 946, 1271
Tsp45I GTSAC 1 cut(s) 750
TspDTI ATGAA 2 cut(s) 471, 1272
TspGWI ACGGA 3 cut(s) 64, 166, 1300
Tth111I GACNNNGTC 1 cut(s) 811
VpaK11BI GGWCC 2 cut(s) 55, 443
XapI RAATTY 3 cut(s) 458, 686, 1203
XbaI TCTAGA 1 cut(s) 937
XmnI GAANNNNTTC 1 cut(s) 1203
XspI CTAG 4 cut(s) 938, 1179, 1268, 1349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.