Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002738

Physical Location & Seq

Genomic Coordinates Forward (+)

13576069 .. 13576858

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAACGCTCGCCGGAAATACCGTTGAACTCGCTCCACAACTCCGGCGTTCGGGTTCCCTACGACGTGTCGTCCGTCCGAGACCTCACGCCGGCCACTTTAGTCTCGACCGCGGCCGGTCCCTCAACCTCATCGCCCAAACCTCGTCGTTTCCGACCTCGCTCCCCGATTCCTCCGTCGCCGACCAGTTCAACGTCCGTATGGACATGGCTTCCGGATCAACGGCCTCGGCTACCCCGGCGACGTGAGCTTCCACAAGTTGGTGAGGTTCTTGGTGGAGAGGCTTTCGGAGTTGTCCCGGAGTGGAAGCGGGGTGGTGTCGACGGTGTTGAGGATATGGGGAGAGTGAAAGAAGATAGCTTTGAAAGCAATGTGGAGAACCACGAAGCGGTGATGACGGACTTGGACCAAAATGGGATGAATTCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF812

Protein Analysis

143

Amino Acids

15.75

Weight (kDa)

5.92

Isoelectric Point (pI)

65.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55830 AT1G55830 AT1G55830
fragaria_vesca	FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411
malus_domestica	MD03G1032000.v1.1 MD03G1032400.v1.1 MD11G1036100.v1.1
prunus_persica	Prupe.6G026900_v2.0.a1 Prupe.6G026900_v2.0.a1
pyrus_communis	pycom11g02980
rosa_chinensis	RchiOBHm_Chr5g0075911
rosa_laevigata	RLG00000009357 RLG00000036601
rosa_multiflora	Rmu_sc0002652.1_g000017
rosa_roxburghii	Rroxscaffold_1G00005770 Rroxscaffold_3G00229030 Rroxscaffold_4G00290220 Rroxscaffold_4G00331910
rosa_rugosa	Rorug01G0374500 Rorug05G0443700 Rorug05G0443800 Rorug05G0443900
rosa_samantha	Rh1BG347000 Rh2DG366700 Rh5AG500500 Rh5BG521600 Rh5CG545600 Rh5DG534400
rosa_wichuraiana	Rw5G046450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	4 cut(s)	111, 113, 310, 389
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	2 cut(s)	93, 114
AcsI	RAATTY	1 cut(s)	421
AfiI	CCNNNNNNNGG	4 cut(s)	51, 91, 260, 388
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	3 cut(s)	28, 192, 365
AhdI	GACNNNNNGTC	1 cut(s)	70
AjiI	CACGTC	2 cut(s)	67, 245
AluBI	AGCT	2 cut(s)	250, 360
AluI	AGCT	2 cut(s)	250, 360
Alw26I	GTCTC	2 cut(s)	75, 109
AlwI	GGATC	1 cut(s)	225
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	3 cut(s)	93, 114, 224
ApoI	RAATTY	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	119, 406
AsuC2I	CCSGG	2 cut(s)	238, 299
AsuHPI	GGTGA	2 cut(s)	275, 403
AvaII	GGWCC	2 cut(s)	119, 406
BceAI	ACGGC	1 cut(s)	239
BcnI	CCSGG	2 cut(s)	238, 299
BcoDI	GTCTC	2 cut(s)	75, 109
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	238, 299
Bme18I	GGWCC	2 cut(s)	119, 406
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmgBI	CACGTC	2 cut(s)	67, 245
BmgT120I	GGNCC	2 cut(s)	119, 406
BmiI	GGNNCC	2 cut(s)	57, 121
BmrFI	CCNGG	2 cut(s)	238, 299
BpuMI	CCSGG	2 cut(s)	238, 299
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	111, 227, 236
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 91, 260, 388
Bse118I	RCCGGY	2 cut(s)	91, 116
Bse1I	ACTGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	376
BseAI	TCCGGA	1 cut(s)	214
BseDI	CCNNGG	3 cut(s)	111, 227, 236
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	4 cut(s)	51, 91, 260, 388
BseMI	GCAATG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	186
BseX3I	CGGCCG	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	2 cut(s)	111, 117
BshFI	GGCC	3 cut(s)	95, 116, 226
BsiEI	CGRYCG	2 cut(s)	111, 117
BsiSI	CCGG	7 cut(s)	14, 45, 92, 117, 215, 238, 299
BslFI	GGGAC	2 cut(s)	105, 281
BslI	CCNNNNNNNGG	4 cut(s)	51, 91, 260, 388
BsmAI	GTCTC	2 cut(s)	75, 109
BsmFI	GGGAC	2 cut(s)	105, 281
BsnI	GGCC	3 cut(s)	95, 116, 226
Bso31I	GGTCTC	1 cut(s)	75
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	4 cut(s)	111, 113, 310, 389
BspANI	GGCC	3 cut(s)	95, 116, 226
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	57, 121
BspPI	GGATC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	376
BsrFI	RCCGGY	2 cut(s)	91, 116
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	2 cut(s)	91, 116
BssECI	CCNNGG	3 cut(s)	111, 227, 236
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	24, 326
BstC8I	GCNNGC	2 cut(s)	11, 93
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	423
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	75, 109
BstMBI	GATC	1 cut(s)	217
BstMCI	CGRYCG	2 cut(s)	111, 117
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 247, 366
BstSCI	CCNGG	2 cut(s)	236, 297
BstUI	CGCG	1 cut(s)	113
BstZI	CGGCCG	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	95, 116, 226
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	117
BtrI	CACGTC	2 cut(s)	67, 245
BtsCI	GGATG	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	11, 93
Cfr10I	RCCGGY	2 cut(s)	91, 116
Cfr13I	GGNCC	2 cut(s)	119, 406
Cfr42I	CCGCGG	1 cut(s)	114
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	8 cut(s)	95, 116, 211, 226, 232, 250, 284, 360
CviKI_1	RGCY	8 cut(s)	95, 116, 211, 226, 232, 250, 284, 360
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DriI	GACNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	2 cut(s)	93, 114
EagI	CGGCCG	1 cut(s)	114
Eam1105I	GACNNNNNGTC	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	119, 406
Eco52I	CGGCCG	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	421
FaeI	CATG	1 cut(s)	210
FaiI	YATR	3 cut(s)	202, 208, 338
FaqI	GGGAC	2 cut(s)	105, 281
FatI	CATG	1 cut(s)	206
FauI	CCCGC	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	95, 116, 226
HapII	CCGG	7 cut(s)	14, 45, 92, 117, 215, 238, 299
Hin1II	CATG	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	7 cut(s)	14, 45, 92, 117, 215, 238, 299
HphI	GGTGA	2 cut(s)	275, 403
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	3 cut(s)	80, 155, 290
Hpy188III	TCNNGA	2 cut(s)	106, 215
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	5 cut(s)	68, 150, 181, 246, 326
HpyCH4III	ACNGT	2 cut(s)	24, 326
HpyCH4IV	ACGT	3 cut(s)	66, 194, 244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 247, 366
HpySE526I	ACGT	3 cut(s)	66, 194, 244
Hsp92II	CATG	1 cut(s)	210
Kpn2I	TCCGGA	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
KspI	CCGCGG	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	39, 167
LpnPI	CCDG	8 cut(s)	27, 58, 105, 130, 199, 228, 251, 312
MaeII	ACGT	3 cut(s)	66, 194, 244
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	365
MluCI	AATT	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	178
MroI	TCCGGA	1 cut(s)	214
MroNI	GCCGGC	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	7 cut(s)	14, 45, 92, 117, 215, 238, 299
MspR9I	CCNGG	2 cut(s)	238, 299
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	238, 247, 366
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	2 cut(s)	238, 299
NdeII	GATC	1 cut(s)	217
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	2 cut(s)	57, 121
NmeAIII	GCCGAG	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 151
PdiI	GCCGGC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	57, 121
PspPI	GGNCC	2 cut(s)	119, 406
SacII	CCGCGG	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	320
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	119, 406
ScrFI	CCNGG	2 cut(s)	238, 299
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	119, 406
Sse9I	AATT	1 cut(s)	421
SsiI	CCGC	4 cut(s)	111, 113, 310, 389
StyD4I	CCNGG	2 cut(s)	236, 297
TaaI	ACNGT	2 cut(s)	24, 326
TaiI	ACGT	3 cut(s)	69, 197, 247
TaqI	TCGA	2 cut(s)	107, 321
TasI	AATT	1 cut(s)	421
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	169
TspGWI	ACGGA	4 cut(s)	64, 165, 187, 413
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	119, 406
XapI	RAATTY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.