RchiOBHm_Chr5g0075911

Coiled-coil domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
81634410 .. 81637276
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35061

Sequence Viewer

Length: 1416 bp
ATGGAACACTCGCCGGAAATACTGCTGAACTCGCTCCACAACTCCGGCGTTCGGGTCCCCTACGACGTGTCGTCCGTCCGAGACCTCACGCCGGCCACTTTGGTCTCGATCTGCGGCCAGTCCCTCAACCTCATCGCCCAAACCTCGTCGTTTCCGACCTCGCTCCCCGATTCCTCCGTCGCCGACCAGTTCAACGTCTGTATGGACATGGCTTCCGGGATCAACAGCCTCGGCTACCCCGGCGACGTGAGCTTCCACAAGTTCTTGTATCCATCTGAAGAGGACTCGTGTAAGTTGGTAAGGTTCTTGGTGGAGAGGCTTTCGGAGTCGTCCAGGAGTGGAAGCAGGGGTGGTGTCGAGGGTGTTGAGGATATGGAGAGAGTGAAAGAAGATAGCTTTGAAAGCAATGTGGGGAACCACAGAAGCGGTGATGACAGACTTGGACCGAAATGGGATGAATTCACATTGAATGGTGAAGAGCCTGAAGTATTGAACATCGAGGGTGAAGATGCCTCTGTCGGTTGTGATGCTAATCATATGCTGCGAAGATTGGATGAAATGAGTATTGACAATGTATCCAGCAGATCTGATGATCTTCATTCGTCAGAGGAGAAACAGCTTGAGGAGGAGATGATGGCAAAGACTTCAGAATTGAAGCACCTTGAAGAAGAGTTGGCATTGTTAAAAGAAGCAGTAGATATAGCATTTGATGTCGATCATCCCGCTGAATTTTACCTCGACAAACTTAATCAGCAGGTGGATGCTCAAAGGCAACGCCTAGGAGAATTGAAGTCACAGCAGGAAGTTGTCAGAAGGCCTTTGGAAGAGAAGAGGAGAACTCTTCAGGAGACTCTGTGTGCAGATAACCCAGATGCTCAGAAAAAGCTCCAAAAGCTGAAACAGCTTGAAGTGGAAAAGGAATCCATGTTAGCTTCAATTCGAAAGAGGGAGGAGGAACTTACTCAACTTACTATGGATCTAGAGAAGCAGCCCAAACTGGCATCAAGGAGATCTTATATTGAAAGGGTCAAAGAGATCACAAAAAATAGTAGGAAGCAAGAAGCTGATATAGAGCAGATTTTAAAGGACACCAGGGAGCTTCAGTTAGAGAGTAATTCTATTCAAGAACGCCTCCATCGGACATATGCTGTTGTAGATGAGCTTGTTTTCAGGGAAGCAAAGAAAGATGCAGTAGGGAGGCAGGCTTATAGGCTCCTCACTAGCATCCACGAGAACTTTGAACAAATTCGTGAGAAAATCCTGGCAACTGATAGAATACGTCGAGAAGCGACTGAACATGAAAAGAAGCTAGCAGCCATGGCTTCACGGAGCTTAAATGCAGACAAACTACAAGCAGATCTTGAGGTCATTAGGAGGGAGAATGAGTACCTAGAGAAATCTCTCCAGGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

53.92

Weight (kDa)

5.02

Isoelectric Point (pI)

62.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC22_N PF21674 1 - 108 1.6e-30 CCDC22 protein N-terminal domain
CCDC22_CC PF05667 188 - 439 8.4e-51 CCDC22 protein coiled-coil region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
Acc36I ACCTGC 1 cut(s) 745
AciI CCGC 3 cut(s) 114, 426, 723
AclWI GGATC 2 cut(s) 227, 984
AcoI YGGCCR 2 cut(s) 93, 115
AcsI RAATTY 3 cut(s) 458, 728, 1245
AcuI CTGAAG 5 cut(s) 297, 504, 630, 827, 1085
AfaI GTAC 1 cut(s) 1388
AfiI CCNNNNNNNGG 2 cut(s) 51, 91
AflIII ACRYGT 1 cut(s) 66
AhdI GACNNNNNGTC 1 cut(s) 70
AjiI CACGTC 2 cut(s) 67, 247
AjnI CCWGG 4 cut(s) 332, 1091, 1260, 1404
Alw26I GTCTC 3 cut(s) 75, 109, 842
AlwI GGATC 2 cut(s) 227, 984
AoxI GGCC 3 cut(s) 93, 115, 815
ApeKI GCWGC 3 cut(s) 541, 988, 1313
ApoI RAATTY 3 cut(s) 458, 728, 1245
Asp700I GAANNNNTTC 1 cut(s) 1245
AspA2I CCTAGG 1 cut(s) 778
AspS9I GGNCC 2 cut(s) 55, 443
AsuC2I CCSGG 2 cut(s) 217, 240
AsuHPI GGTGA 3 cut(s) 440, 485, 515
AsuII TTCGAA 1 cut(s) 940
AsuNHI GCTAGC 1 cut(s) 1309
AvaII GGWCC 2 cut(s) 55, 443
AvrII CCTAGG 1 cut(s) 778
BauI CACGAG 2 cut(s) 286, 1229
BbvI GCAGC 3 cut(s) 528, 1000, 1325
BccI CCATC 3 cut(s) 280, 628, 1143
BciT130I CCWGG 4 cut(s) 334, 1093, 1262, 1406
BciVI GTATCC 2 cut(s) 279, 586
BcnI CCSGG 2 cut(s) 217, 240
BcoDI GTCTC 3 cut(s) 75, 109, 842
BfaI CTAG 5 cut(s) 779, 980, 1221, 1310, 1391
BfuAI ACCTGC 1 cut(s) 745
BfuI GTATCC 2 cut(s) 279, 586
BglII AGATCT 3 cut(s) 584, 1010, 1357
BisI GCNGC 4 cut(s) 115, 542, 989, 1314
BlnI CCTAGG 1 cut(s) 778
BlsI GCNGC 4 cut(s) 116, 543, 990, 1315
Bme1390I CCNGG 6 cut(s) 217, 240, 334, 1093, 1262, 1406
Bme18I GGWCC 2 cut(s) 55, 443
BmeRI GACNNNNNGTC 1 cut(s) 70
BmgBI CACGTC 2 cut(s) 67, 247
BmgT120I GGNCC 2 cut(s) 55, 443
BmiI GGNNCC 4 cut(s) 56, 57, 416, 1214
BmrFI CCNGG 6 cut(s) 217, 240, 334, 1093, 1262, 1406
BmsI GCATC 7 cut(s) 499, 517, 751, 862, 1010, 1177, 1233
BmtI GCTAGC 1 cut(s) 1313
BplI GAGNNNNNCTC 2 cut(s) 823, 855
BpmI CTGGAG 1 cut(s) 1388
Bpu14I TTCGAA 1 cut(s) 940
BpuEI CTTGAG 2 cut(s) 641, 1382
BpuMI CCSGG 2 cut(s) 217, 240
BsaBI GATNNNNATC 2 cut(s) 531, 714
BsaI GGTCTC 2 cut(s) 75, 109
BsaJI CCNNGG 5 cut(s) 229, 238, 778, 1092, 1317
BsaXI ACNNNNNCTCC 6 cut(s) 839, 869, 1088, 1118, 1370, 1400
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 91
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 3 cut(s) 118, 187, 1002
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 2 cut(s) 531, 714
BseBI CCWGG 4 cut(s) 334, 1093, 1262, 1406
BseDI CCNNGG 5 cut(s) 229, 238, 778, 1092, 1317
BseGI GGATG 5 cut(s) 460, 559, 718, 766, 1224
BseJI GATNNNNATC 2 cut(s) 531, 714
BseLI CCNNNNNNNGG 2 cut(s) 51, 91
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 890
BseNI ACTGG 3 cut(s) 118, 187, 1002
BseRI GAGGAG 6 cut(s) 623, 638, 641, 847, 965, 1205
BseXI GCAGC 3 cut(s) 528, 1000, 1325
BsgI GTGCAG 1 cut(s) 879
BshFI GGCC 3 cut(s) 95, 117, 817
BsiSI CCGG 5 cut(s) 14, 45, 92, 216, 240
BslFI GGGAC 2 cut(s) 41, 106
BslI CCNNNNNNNGG 2 cut(s) 51, 91
BsmAI GTCTC 3 cut(s) 75, 109, 842
BsmFI GGGAC 2 cut(s) 41, 106
BsnI GGCC 3 cut(s) 95, 117, 817
Bso31I GGTCTC 2 cut(s) 75, 109
Bsp119I TTCGAA 1 cut(s) 940
Bsp143I GATC 9 cut(s) 108, 219, 584, 592, 715, 976, 1010, 1035, 1357
Bsp19I CCATGG 1 cut(s) 1317
BspACI CCGC 3 cut(s) 114, 426, 723
BspANI GGCC 3 cut(s) 95, 117, 817
BspCNI CTCAG 1 cut(s) 889
BspLI GGNNCC 4 cut(s) 56, 57, 416, 1214
BspMI ACCTGC 1 cut(s) 745
BspOI GCTAGC 1 cut(s) 1313
BspPI GGATC 2 cut(s) 227, 984
BspQI GCTCTTC 1 cut(s) 471
BspT104I TTCGAA 1 cut(s) 940
BspTNI GGTCTC 2 cut(s) 75, 109
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 3 cut(s) 118, 187, 1002
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 5 cut(s) 229, 238, 778, 1092, 1317
BssMI GATC 9 cut(s) 108, 219, 584, 592, 715, 976, 1010, 1035, 1357
BssSI CACGAG 2 cut(s) 286, 1229
BssT1I CCWWGG 2 cut(s) 778, 1317
Bst2BI CACGAG 2 cut(s) 286, 1229
Bst2UI CCWGG 4 cut(s) 334, 1093, 1262, 1406
Bst6I CTCTTC 6 cut(s) 273, 471, 663, 819, 824, 846
BstBI TTCGAA 1 cut(s) 940
BstC8I GCNNGC 3 cut(s) 93, 1203, 1311
BstDEI CTNAG 1 cut(s) 876
BstDSI CCRYGG 1 cut(s) 1317
BstF5I GGATG 5 cut(s) 460, 559, 718, 766, 1224
BstKTI GATC 9 cut(s) 111, 222, 587, 595, 718, 979, 1013, 1038, 1360
BstMAI GTCTC 3 cut(s) 75, 109, 842
BstMBI GATC 9 cut(s) 108, 219, 584, 592, 715, 976, 1010, 1035, 1357
BstMWI GCNNNNNNNGC 7 cut(s) 31, 240, 249, 402, 892, 901, 1319
BstNI CCWGG 4 cut(s) 334, 1093, 1262, 1406
BstSCI CCNGG 6 cut(s) 215, 238, 332, 1091, 1260, 1404
BstV1I GCAGC 3 cut(s) 528, 1000, 1325
BstX2I RGATCY 4 cut(s) 584, 976, 1010, 1357
BstYI RGATCY 4 cut(s) 584, 976, 1010, 1357
BsuI GTATCC 2 cut(s) 279, 586
BsuRI GGCC 3 cut(s) 95, 117, 817
BtgI CCRYGG 1 cut(s) 1317
BtgZI GCGATG 1 cut(s) 118
BtrI CACGTC 2 cut(s) 67, 247
BtsCI GGATG 5 cut(s) 460, 559, 718, 766, 1224
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 3 cut(s) 93, 1203, 1311
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 55, 443
Csp6I GTAC 1 cut(s) 1387
CviAII CATG 4 cut(s) 208, 925, 1298, 1318
CviQI GTAC 1 cut(s) 1387
DdeI CTNAG 1 cut(s) 876
DpnI GATC 9 cut(s) 110, 221, 586, 594, 717, 978, 1012, 1037, 1359
DpnII GATC 9 cut(s) 108, 219, 584, 592, 715, 976, 1010, 1035, 1357
DraI TTTAAA 1 cut(s) 1083
DriI GACNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 2 cut(s) 93, 115
Eam1104I CTCTTC 6 cut(s) 273, 471, 663, 819, 824, 846
Eam1105I GACNNNNNGTC 1 cut(s) 70
EarI CTCTTC 6 cut(s) 273, 471, 663, 819, 824, 846
Eco130I CCWWGG 2 cut(s) 778, 1317
Eco147I AGGCCT 1 cut(s) 817
Eco31I GGTCTC 2 cut(s) 75, 109
Eco47I GGWCC 2 cut(s) 55, 443
Eco57I CTGAAG 5 cut(s) 297, 504, 630, 827, 1085
EcoO109I RGGNCCY 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 4 cut(s) 332, 1091, 1260, 1404
EcoT14I CCWWGG 2 cut(s) 778, 1317
ErhI CCWWGG 2 cut(s) 778, 1317
FaeI CATG 4 cut(s) 211, 928, 1301, 1321
FalI AAGNNNNNCTT 4 cut(s) 997, 1029, 1344, 1376
FaqI GGGAC 2 cut(s) 41, 106
FatI CATG 4 cut(s) 207, 924, 1297, 1317
FauI CCCGC 1 cut(s) 730
FauNDI CATATG 2 cut(s) 537, 1144
Fnu4HI GCNGC 4 cut(s) 115, 542, 989, 1314
FokI GGATG 5 cut(s) 467, 566, 705, 773, 1211
Fsp4HI GCNGC 4 cut(s) 115, 542, 989, 1314
FspBI CTAG 5 cut(s) 779, 980, 1221, 1310, 1391
GluI GCNGC 4 cut(s) 115, 542, 989, 1314
GsuI CTGGAG 1 cut(s) 1388
HaeIII GGCC 3 cut(s) 95, 117, 817
HapII CCGG 5 cut(s) 14, 45, 92, 216, 240
Hin1II CATG 4 cut(s) 211, 928, 1301, 1321
HinfI GANTC 5 cut(s) 170, 284, 326, 850, 920
HpaII CCGG 5 cut(s) 14, 45, 92, 216, 240
HphI GGTGA 3 cut(s) 440, 485, 515
Hpy188III TCNNGA 7 cut(s) 106, 845, 980, 1124, 1250, 1283, 1361
Hpy99I CGWCG 5 cut(s) 68, 151, 182, 248, 1284
HpyAV CCTTC 1 cut(s) 807
HpyCH4IV ACGT 4 cut(s) 66, 195, 246, 1279
HpyCH4V TGCA 3 cut(s) 860, 1190, 1340
HpyF10VI GCNNNNNNNGC 7 cut(s) 31, 240, 249, 402, 892, 901, 1319
HpyF3I CTNAG 1 cut(s) 876
HpySE526I ACGT 4 cut(s) 66, 195, 246, 1279
Hsp92II CATG 4 cut(s) 211, 928, 1301, 1321
KflI GGGWCCC 1 cut(s) 55
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Kzo9I GATC 9 cut(s) 108, 219, 584, 592, 715, 976, 1010, 1035, 1357
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 6 cut(s) 39, 168, 891, 1096, 1218, 1329
Lsp1109I GCAGC 3 cut(s) 528, 1000, 1325
LweI GCATC 7 cut(s) 499, 517, 751, 862, 1010, 1177, 1233
MaeI CTAG 5 cut(s) 779, 980, 1221, 1310, 1391
MaeII ACGT 4 cut(s) 66, 195, 246, 1279
MaeIII GTNAC 1 cut(s) 792
MalI GATC 9 cut(s) 110, 221, 586, 594, 717, 978, 1012, 1037, 1359
MboI GATC 9 cut(s) 108, 219, 584, 592, 715, 976, 1010, 1035, 1357
MflI RGATCY 4 cut(s) 584, 976, 1010, 1357
MluCI AATT 7 cut(s) 458, 650, 728, 785, 936, 1114, 1245
MlyI GAGTC 3 cut(s) 278, 335, 844
MmeI TCCRAC 1 cut(s) 179
MroNI GCCGGC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 1245
MseI TTAA 4 cut(s) 683, 747, 1082, 1334
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 5 cut(s) 14, 45, 92, 216, 240
MspR9I CCNGG 6 cut(s) 217, 240, 334, 1093, 1262, 1406
MvaI CCWGG 4 cut(s) 334, 1093, 1262, 1406
MwoI GCNNNNNNNGC 7 cut(s) 31, 240, 249, 402, 892, 901, 1319
NaeI GCCGGC 1 cut(s) 93
NciI CCSGG 2 cut(s) 217, 240
NcoI CCATGG 1 cut(s) 1317
NdeI CATATG 2 cut(s) 537, 1144
NdeII GATC 9 cut(s) 108, 219, 584, 592, 715, 976, 1010, 1035, 1357
NgoMIV GCCGGC 1 cut(s) 91
NheI GCTAGC 1 cut(s) 1309
NlaIII CATG 4 cut(s) 211, 928, 1301, 1321
NlaIV GGNNCC 4 cut(s) 56, 57, 416, 1214
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 792
NspV TTCGAA 1 cut(s) 940
PaqCI CACCTGC 1 cut(s) 745
PceI AGGCCT 1 cut(s) 817
PciSI GCTCTTC 1 cut(s) 471
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 152
PdiI GCCGGC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 1245
PfeI GAWTC 2 cut(s) 170, 920
PfoI TCCNGGA 3 cut(s) 215, 332, 1404
PkrI GCNGC 4 cut(s) 116, 543, 990, 1315
PleI GAGTC 3 cut(s) 278, 334, 844
PpsI GAGTC 3 cut(s) 278, 334, 844
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 4 cut(s) 332, 1091, 1260, 1404
PspGI CCWGG 4 cut(s) 332, 1091, 1260, 1404
PspN4I GGNNCC 4 cut(s) 56, 57, 416, 1214
PspPI GGNCC 2 cut(s) 55, 443
PspPPI RGGWCCY 1 cut(s) 55
PsuI RGATCY 4 cut(s) 584, 976, 1010, 1357
RsaI GTAC 1 cut(s) 1388
RsaNI GTAC 1 cut(s) 1387
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 4 cut(s) 683, 747, 1082, 1334
SatI GCNGC 4 cut(s) 115, 542, 989, 1314
Sau3AI GATC 9 cut(s) 108, 219, 584, 592, 715, 976, 1010, 1035, 1357
Sau96I GGNCC 2 cut(s) 55, 443
SchI GAGTC 3 cut(s) 278, 335, 844
ScrFI CCNGG 6 cut(s) 217, 240, 334, 1093, 1262, 1406
SfaNI GCATC 7 cut(s) 499, 517, 751, 862, 1010, 1177, 1233
SfuI TTCGAA 1 cut(s) 940
SinI GGWCC 2 cut(s) 55, 443
SmlI CTYRAG 2 cut(s) 620, 1361
SmoI CTYRAG 2 cut(s) 620, 1361
Sse9I AATT 7 cut(s) 458, 650, 728, 785, 936, 1114, 1245
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 3 cut(s) 114, 426, 723
SspMI CTAG 5 cut(s) 779, 980, 1221, 1310, 1391
StuI AGGCCT 1 cut(s) 817
StyD4I CCNGG 6 cut(s) 215, 238, 332, 1091, 1260, 1404
StyI CCWWGG 2 cut(s) 778, 1317
TaiI ACGT 4 cut(s) 69, 198, 249, 1282
TaqI TCGA 7 cut(s) 107, 357, 498, 714, 738, 940, 1282
TaqII GACCGA 1 cut(s) 460
TasI AATT 7 cut(s) 458, 650, 728, 785, 936, 1114, 1245
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 2 cut(s) 170, 920
Tru1I TTAA 4 cut(s) 683, 747, 1082, 1334
Tru9I TTAA 4 cut(s) 683, 747, 1082, 1334
TseFI GTSAC 1 cut(s) 792
TseI GCWGC 3 cut(s) 541, 988, 1313
Tsp45I GTSAC 1 cut(s) 792
TspDTI ATGAA 4 cut(s) 471, 570, 587, 1314
TspGWI ACGGA 3 cut(s) 64, 166, 1342
VpaK11BI GGWCC 2 cut(s) 55, 443
XapI RAATTY 3 cut(s) 458, 728, 1245
XbaI TCTAGA 1 cut(s) 979
XmaJI CCTAGG 1 cut(s) 778
XmnI GAANNNNTTC 1 cut(s) 1245
XspI CTAG 5 cut(s) 779, 980, 1221, 1310, 1391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.