Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002738

Physical Location & Seq

Genomic Coordinates Forward (+)

35404421 .. 35407347

Gene Structure 2927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42411.t11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTGTTGCTTACGGCAGTTCTTGTATCCATCTGAAGAGGACTCGTGTAAGTTGGTAAGGTTCTTGGTGGAGAGGCTTTCAGAGTCGTCCAGGAGTGGAAGCAGGGGTGATCTCAATGACATGGGGAGAGTGAAAGAAGATGGCTTTGAAAGCGATTTGGCCAGCCAAAAAAGAGGTGAGGATAGACTTGCACCCAAATGGGATGAATTCAGATTGAACGGTGAAGAGCCTGAAGTATTGGATAGCAAGGGTGAAGATGCATCCGGCAGTTGTGTTGCTAATCATATGCTGCAAAGATTGGAGGAAATGAGTATTGACAAGGTATCCAGCAGACCTGGTGACGCACATTCATCAGAGGAGAAACAGCTCACAGAGGAGGTTACTGCAAAGACTTTAGAATTGAAGCACCTTGAAGAAGAGCTGGAATTGTTAAAAGCAGCAGTAGCTATAGCATTTGATGTCGATCGTCCCACTGAATTTTACCTTGAGGAACTTAATCAGCAAGTGGATGCTCGTAAGAAACACATTGGAGAACTGAAGTTACAGCAGGAAGAAATCAGAAGGCCTTTAGTAGAGAAAAGAAGATGTCTTCAGGAGACTCTATCTGCAGGTAACCCTGATGCTCAAAAAAAGATGCAGAAGCTGAAACAGCTTGAATTGGAAAAGGAATCCATCTTAGCTGCAATTCATAAAAGGGAGGAGGAACTTTCTCAACTTTCTGGGGATCTAGAGAAGCAGCCAAAAGTAGCATCAAGGAGATCTTACATTGAAAGGGTCAAAGAGATCACAAAAAATAGTCGGAAGCAAGAAGCTGACATAGAGCAGATTTTAAAGGACACCAGGGAGCTTCAGTTAGAGAGTAATTCTATTCAAGAACGCCTCCATCGGACCTATGCTGTTGTAGATGAGCTAGTGTTTAGGGAAGCAAAGAAAGATGCAGTAGGGAGGCAAGCTTATAGGCTCCTCACTAGCATCCATGAGAGCTTTGAACAAATTCGTGAGAAGATTCTGGCAACTGATAGAATACGCCGAGAAGCAACTGAACATGAAAAGAAGCTAGCATCCATGGCTTCACGAAGCTTAAATGCAGACAAGTTACAAGCAGATCTTGAGGTCATTAGGAGGGAAAATGAGTACCTAGAGAAATCTCTCCAGGATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF812

Protein Analysis

388

Amino Acids

44.8

Weight (kDa)

5.47

Isoelectric Point (pI)

67.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC22_N	PF21674	1 - 108	1.4e-30	CCDC22 protein N-terminal domain
CCDC22_CC	PF05667	197 - 388	1.2e-36	CCDC22 protein coiled-coil region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55830 AT1G55830 AT1G55830
fragaria_vesca	FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411
malus_domestica	MD03G1032000.v1.1 MD03G1032400.v1.1 MD11G1036100.v1.1
prunus_persica	Prupe.6G026900_v2.0.a1 Prupe.6G026900_v2.0.a1
pyrus_communis	pycom11g02980
rosa_chinensis	RchiOBHm_Chr5g0075911
rosa_laevigata	RLG00000009357 RLG00000036601
rosa_multiflora	Rmu_sc0002652.1_g000017
rosa_roxburghii	Rroxscaffold_1G00005770 Rroxscaffold_3G00229030 Rroxscaffold_4G00290220 Rroxscaffold_4G00331910
rosa_rugosa	Rorug01G0374500 Rorug05G0443700 Rorug05G0443800 Rorug05G0443900
rosa_samantha	Rh1BG347000 Rh2DG366700 Rh5AG500500 Rh5BG521600 Rh5CG545600 Rh5DG534400
rosa_wichuraiana	Rw5G046450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	599
AclWI	GGATC	1 cut(s)	732
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	3 cut(s)	206, 476, 993
AcuI	CTGAAG	5 cut(s)	54, 252, 557, 575, 833
AfaI	GTAC	1 cut(s)	1136
AgsI	TTSAA	8 cut(s)	149, 217, 403, 413, 656, 770, 872, 989
AjnI	CCWGG	4 cut(s)	89, 334, 839, 1152
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	1 cut(s)	732
AlwNI	CAGNNNCTG	1 cut(s)	643
AoxI	GGCC	2 cut(s)	159, 563
ApeKI	GCWGC	4 cut(s)	289, 437, 680, 736
ApoI	RAATTY	3 cut(s)	206, 476, 993
Asp700I	GAANNNNTTC	1 cut(s)	993
AspS9I	GGNCC	1 cut(s)	888
AsuHPI	GGTGA	5 cut(s)	119, 188, 233, 263, 350
AsuNHI	GCTAGC	1 cut(s)	1057
AvaII	GGWCC	1 cut(s)	888
BalI	TGGCCA	1 cut(s)	161
BauI	CACGAG	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	581
BbvI	GCAGC	4 cut(s)	276, 449, 667, 748
BccI	CCATC	4 cut(s)	37, 134, 680, 891
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	4 cut(s)	91, 336, 841, 1154
BciVI	GTATCC	2 cut(s)	36, 334
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	5 cut(s)	728, 911, 969, 1058, 1139
BfmI	CTRYAG	2 cut(s)	447, 606
BfuAI	ACCTGC	1 cut(s)	599
BfuI	GTATCC	2 cut(s)	36, 334
BglII	AGATCT	2 cut(s)	758, 1105
BisI	GCNGC	4 cut(s)	290, 438, 681, 737
BlsI	GCNGC	4 cut(s)	291, 439, 682, 738
Bme1390I	CCNGG	4 cut(s)	91, 336, 841, 1154
Bme18I	GGWCC	1 cut(s)	888
BmgT120I	GGNCC	1 cut(s)	888
BmiI	GGNNCC	1 cut(s)	962
BmrFI	CCNGG	4 cut(s)	91, 336, 841, 1154
BmsI	GCATC	9 cut(s)	247, 269, 499, 610, 624, 758, 925, 981, 1070
BmtI	GCTAGC	1 cut(s)	1061
BpiI	GAAGAC	1 cut(s)	581
BpmI	CTGGAG	1 cut(s)	1136
BpuEI	CTTGAG	2 cut(s)	506, 1130
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	840, 1065
BsaXI	ACNNNNNCTCC	2 cut(s)	836, 866
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	4 cut(s)	91, 336, 841, 1154
BseDI	CCNNGG	2 cut(s)	840, 1065
BseGI	GGATG	5 cut(s)	208, 260, 514, 972, 1061
BseJI	GATNNNNATC	1 cut(s)	462
BseRI	GAGGAG	4 cut(s)	371, 389, 713, 953
BseXI	GCAGC	4 cut(s)	276, 449, 667, 748
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	2 cut(s)	161, 565
BsiEI	CGRYCG	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	453
BsmAI	GTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	161, 565
Bsp143I	GATC	6 cut(s)	109, 463, 724, 758, 783, 1105
Bsp19I	CCATGG	1 cut(s)	1065
BspANI	GGCC	2 cut(s)	161, 565
BspLI	GGNNCC	1 cut(s)	962
BspMAI	CTGCAG	1 cut(s)	610
BspMI	ACCTGC	1 cut(s)	599
BspOI	GCTAGC	1 cut(s)	1061
BspPI	GGATC	1 cut(s)	732
BspQI	GCTCTTC	2 cut(s)	219, 411
BssECI	CCNNGG	2 cut(s)	840, 1065
BssMI	GATC	6 cut(s)	109, 463, 724, 758, 783, 1105
BssSI	CACGAG	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	1065
Bst2BI	CACGAG	1 cut(s)	43
Bst2UI	CCWGG	4 cut(s)	91, 336, 841, 1154
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	3 cut(s)	30, 219, 411
BstC8I	GCNNGC	3 cut(s)	163, 951, 1059
BstDEI	CTNAG	1 cut(s)	676
BstDSI	CCRYGG	1 cut(s)	1065
BstEII	GGTNACC	1 cut(s)	611
BstF5I	GGATG	5 cut(s)	208, 260, 514, 972, 1061
BstKTI	GATC	6 cut(s)	112, 466, 727, 761, 786, 1108
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	6 cut(s)	109, 463, 724, 758, 783, 1105
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 443, 649, 1067
BstNI	CCWGG	4 cut(s)	91, 336, 841, 1154
BstPI	GGTNACC	1 cut(s)	611
BstSCI	CCNGG	4 cut(s)	89, 334, 839, 1152
BstSFI	CTRYAG	2 cut(s)	447, 606
BstV1I	GCAGC	4 cut(s)	276, 449, 667, 748
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	3 cut(s)	724, 758, 1105
BstYI	RGATCY	3 cut(s)	724, 758, 1105
BsuI	GTATCC	2 cut(s)	36, 334
BsuRI	GGCC	2 cut(s)	161, 565
BtgI	CCRYGG	1 cut(s)	1065
BtsCI	GGATG	5 cut(s)	208, 260, 514, 972, 1061
BtsIMutI	CAGTG	1 cut(s)	471
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	3 cut(s)	163, 951, 1059
CaiI	CAGNNNCTG	1 cut(s)	643
Cfr13I	GGNCC	1 cut(s)	888
CseI	GACGC	1 cut(s)	350
CsiI	ACCWGGT	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	1135
CviAII	CATG	4 cut(s)	121, 977, 1046, 1066
CviQI	GTAC	1 cut(s)	1135
DdeI	CTNAG	1 cut(s)	676
DpnI	GATC	6 cut(s)	111, 465, 726, 760, 785, 1107
DpnII	GATC	6 cut(s)	109, 463, 724, 758, 783, 1105
DraI	TTTAAA	1 cut(s)	831
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	3 cut(s)	30, 219, 411
EarI	CTCTTC	3 cut(s)	30, 219, 411
Eco130I	CCWWGG	1 cut(s)	1065
Eco147I	AGGCCT	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	888
Eco57I	CTGAAG	5 cut(s)	54, 252, 557, 575, 833
Eco91I	GGTNACC	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	4 cut(s)	89, 334, 839, 1152
EcoT14I	CCWWGG	1 cut(s)	1065
EcoT22I	ATGCAT	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	1065
FaeI	CATG	4 cut(s)	124, 980, 1049, 1069
FalI	AAGNNNNNCTT	4 cut(s)	745, 777, 1092, 1124
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	4 cut(s)	120, 976, 1045, 1065
FauNDI	CATATG	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	290, 438, 681, 737
FokI	GGATG	5 cut(s)	215, 247, 521, 959, 1048
Fsp4HI	GCNGC	4 cut(s)	290, 438, 681, 737
FspBI	CTAG	5 cut(s)	728, 911, 969, 1058, 1139
GluI	GCNGC	4 cut(s)	290, 438, 681, 737
GsuI	CTGGAG	1 cut(s)	1136
HaeIII	GGCC	2 cut(s)	161, 565
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	124, 980, 1049, 1069
HindIII	AAGCTT	2 cut(s)	951, 1078
HinfI	GANTC	5 cut(s)	41, 83, 598, 668, 1006
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	5 cut(s)	119, 188, 233, 263, 350
Hpy188I	TCNGA	7 cut(s)	34, 82, 212, 355, 560, 801, 888
Hpy188III	TCNNGA	6 cut(s)	593, 728, 872, 998, 1074, 1109
HpyAV	CCTTC	1 cut(s)	555
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	9 cut(s)	191, 260, 292, 386, 608, 637, 683, 938, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 443, 649, 1067
HpyF3I	CTNAG	1 cut(s)	676
Hsp92II	CATG	4 cut(s)	124, 980, 1049, 1069
Kzo9I	GATC	6 cut(s)	109, 463, 724, 758, 783, 1105
LguI	GCTCTTC	2 cut(s)	219, 411
LmnI	GCTCC	2 cut(s)	844, 966
Lsp1109I	GCAGC	4 cut(s)	276, 449, 667, 748
LweI	GCATC	9 cut(s)	247, 269, 499, 610, 624, 758, 925, 981, 1070
MabI	ACCWGGT	1 cut(s)	334
MaeI	CTAG	5 cut(s)	728, 911, 969, 1058, 1139
MaeIII	GTNAC	5 cut(s)	338, 379, 540, 611, 1095
MalI	GATC	6 cut(s)	111, 465, 726, 760, 785, 1107
MboI	GATC	6 cut(s)	109, 463, 724, 758, 783, 1105
MflI	RGATCY	3 cut(s)	724, 758, 1105
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	8 cut(s)	206, 398, 425, 476, 656, 684, 862, 993
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	3 cut(s)	35, 92, 592
MmeI	TCCRAC	1 cut(s)	779
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	993
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	4 cut(s)	431, 495, 830, 1082
MslI	CAYNNNNRTG	1 cut(s)	196
Msp20I	TGGCCA	1 cut(s)	161
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	4 cut(s)	91, 336, 841, 1154
MvaI	CCWGG	4 cut(s)	91, 336, 841, 1154
MwoI	GCNNNNNNNGC	4 cut(s)	150, 443, 649, 1067
NcoI	CCATGG	1 cut(s)	1065
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	6 cut(s)	109, 463, 724, 758, 783, 1105
NheI	GCTAGC	1 cut(s)	1057
NlaIII	CATG	4 cut(s)	124, 980, 1049, 1069
NlaIV	GGNNCC	1 cut(s)	962
NmeAIII	GCCGAG	1 cut(s)	1055
NmuCI	GTSAC	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	565
PciSI	GCTCTTC	2 cut(s)	219, 411
PdmI	GAANNNNTTC	1 cut(s)	993
PfeI	GAWTC	2 cut(s)	668, 1006
PfoI	TCCNGGA	2 cut(s)	89, 1152
PkrI	GCNGC	4 cut(s)	291, 439, 682, 738
Ple19I	CGATCG	1 cut(s)	466
PleI	GAGTC	3 cut(s)	35, 91, 592
PpsI	GAGTC	3 cut(s)	35, 91, 592
Psp6I	CCWGG	4 cut(s)	89, 334, 839, 1152
PspEI	GGTNACC	1 cut(s)	611
PspGI	CCWGG	4 cut(s)	89, 334, 839, 1152
PspN4I	GGNNCC	1 cut(s)	962
PspPI	GGNCC	1 cut(s)	888
PsrI	GAACNNNNNNTAC	2 cut(s)	525, 557
PstI	CTGCAG	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	643
PsuI	RGATCY	3 cut(s)	724, 758, 1105
PvuI	CGATCG	1 cut(s)	466
RsaI	GTAC	1 cut(s)	1136
RsaNI	GTAC	1 cut(s)	1135
RseI	CAYNNNNRTG	1 cut(s)	196
SapI	GCTCTTC	2 cut(s)	219, 411
SaqAI	TTAA	4 cut(s)	431, 495, 830, 1082
SatI	GCNGC	4 cut(s)	290, 438, 681, 737
Sau3AI	GATC	6 cut(s)	109, 463, 724, 758, 783, 1105
Sau96I	GGNCC	1 cut(s)	888
SchI	GAGTC	3 cut(s)	35, 92, 592
ScrFI	CCNGG	4 cut(s)	91, 336, 841, 1154
SexAI	ACCWGGT	1 cut(s)	334
SfaNI	GCATC	9 cut(s)	247, 269, 499, 610, 624, 758, 925, 981, 1070
SfcI	CTRYAG	2 cut(s)	447, 606
SinI	GGWCC	1 cut(s)	888
SmiMI	CAYNNNNRTG	1 cut(s)	196
SmlI	CTYRAG	2 cut(s)	485, 1109
SmoI	CTYRAG	2 cut(s)	485, 1109
Sse9I	AATT	8 cut(s)	206, 398, 425, 476, 656, 684, 862, 993
SseBI	AGGCCT	1 cut(s)	565
SspMI	CTAG	5 cut(s)	728, 911, 969, 1058, 1139
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	4 cut(s)	89, 334, 839, 1152
StyI	CCWWGG	1 cut(s)	1065
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	462
TasI	AATT	8 cut(s)	206, 398, 425, 476, 656, 684, 862, 993
TfiI	GAWTC	2 cut(s)	668, 1006
Tru1I	TTAA	4 cut(s)	431, 495, 830, 1082
Tru9I	TTAA	4 cut(s)	431, 495, 830, 1082
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	4 cut(s)	289, 437, 680, 736
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	4 cut(s)	219, 339, 677, 1062
TspRI	CASTG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	888
XapI	RAATTY	3 cut(s)	206, 476, 993
XbaI	TCTAGA	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	993
XspI	CTAG	5 cut(s)	728, 911, 969, 1058, 1139
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.