AT1G56220

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006178
Physical Location & Seq
Forward (+)
21042951 .. 21044998
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56220.1

Sequence Viewer

Length: 414 bp
ATGGGCTTACTTGATCATCTCTGGGATGATACTGTCGCTGGTCCACGGCCAGAGAACGGCCTTGGCAAGCTTCGTAAACACCATACCTTCAGTTTCCGACCTAGCTCCGGCAATGATCAATCGGAAGCTGGAAGTGCGAGATCGTACGGTGAGGATTCGCTACCGGAAGAAGCAGTGAAAGTTACACGTAGTATCATGATAATTAAACCACCGGGTTACCAAGGCAGTTCAGCTCCAGCTTCGCCTGCCGGTTCAACTCCGCCGCTATCACCTTTCTCTCCGCCGCTGTCTCCGTTCTCTGGGGGAAAGGAACCCTTTCGGTTTAGGAGACGGTCGACGTCGGATGCGTTCGAGAAGGCAGCAGGAGGATCAGAGACTGGACCAAGGAGCTCTCCTCCTACTTACGGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

137

Amino Acids

14.52

Weight (kDa)

9.1

Isoelectric Point (pI)

80.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 55 7.1e-08 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 335
AciI CCGC 4 cut(s) 260, 263, 281, 284
AclWI GGATC 1 cut(s) 376
AcoI YGGCCR 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 4 cut(s) 56, 107, 299, 404
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 1 cut(s) 255
AluBI AGCT 6 cut(s) 70, 105, 128, 233, 239, 390
AluI AGCT 6 cut(s) 70, 105, 128, 233, 239, 390
Alw21I GWGCWC 1 cut(s) 392
Alw26I GTCTC 3 cut(s) 294, 322, 368
AlwI GGATC 1 cut(s) 376
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 2 cut(s) 47, 58
ApeKI GCWGC 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 41, 380
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 161, 261
AvaII GGWCC 2 cut(s) 41, 380
BanII GRGCYC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 371
BceAI ACGGC 2 cut(s) 62, 73
BclI TGATCA 2 cut(s) 13, 115
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 3 cut(s) 294, 322, 368
BfaI CTAG 1 cut(s) 102
BisI GCNGC 3 cut(s) 263, 284, 360
BlsI GCNGC 3 cut(s) 264, 285, 361
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 2 cut(s) 41, 380
BmgT120I GGNCC 2 cut(s) 41, 380
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 1 cut(s) 334
BplI GAGNNNNNCTC 2 cut(s) 379, 411
BpmI CTGGAG 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 338
BsaJI CCNNGG 4 cut(s) 44, 61, 220, 383
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 107, 299, 404
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 118
BseDI CCNNGG 4 cut(s) 44, 61, 220, 383
BseGI GGATG 2 cut(s) 31, 349
BseLI CCNNNNNNNGG 4 cut(s) 56, 107, 299, 404
BseMI GCAATG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 371
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 2 cut(s) 49, 60
BsiEI CGRYCG 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 392
BsiSI CCGG 4 cut(s) 108, 164, 212, 249
BsiWI CGTACG 1 cut(s) 144
BslI CCNNNNNNNGG 4 cut(s) 56, 107, 299, 404
BsmAI GTCTC 3 cut(s) 294, 322, 368
BsmBI CGTCTC 1 cut(s) 322
BsnI GGCC 2 cut(s) 49, 60
Bsp1286I GDGCHC 1 cut(s) 392
Bsp143I GATC 4 cut(s) 13, 115, 140, 368
BspACI CCGC 4 cut(s) 260, 263, 281, 284
BspANI GGCC 2 cut(s) 49, 60
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 4 cut(s) 44, 61, 220, 383
BssMI GATC 4 cut(s) 13, 115, 140, 368
BssNI GRCGYC 1 cut(s) 338
BssT1I CCWWGG 3 cut(s) 61, 220, 383
Bst4CI ACNGT 3 cut(s) 34, 149, 333
BstACI GRCGYC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 68, 246
BstDSI CCRYGG 1 cut(s) 44
BstEII GGTNACC 1 cut(s) 215
BstF5I GGATG 2 cut(s) 31, 349
BstKTI GATC 4 cut(s) 16, 118, 143, 371
BstMAI GTCTC 3 cut(s) 294, 322, 368
BstMBI GATC 4 cut(s) 13, 115, 140, 368
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 2 cut(s) 134, 245
BstNSI RCATGY 1 cut(s) 412
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 371
BsuRI GGCC 2 cut(s) 49, 60
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 2 cut(s) 31, 349
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 68, 246
CaiI CAGNNNCTG 1 cut(s) 377
CciI TCATGA 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 41, 380
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 196, 409
CviJI RGCY 9 cut(s) 6, 49, 60, 70, 105, 128, 233, 239, 390
CviKI_1 RGCY 9 cut(s) 6, 49, 60, 70, 105, 128, 233, 239, 390
CviQI GTAC 1 cut(s) 145
DpnI GATC 4 cut(s) 15, 117, 142, 370
DpnII GATC 4 cut(s) 13, 115, 140, 368
EaeI YGGCCR 1 cut(s) 47
EciI GGCGGA 2 cut(s) 249, 270
Ecl136II GAGCTC 1 cut(s) 390
Eco130I CCWWGG 3 cut(s) 61, 220, 383
Eco24I GRGCYC 1 cut(s) 392
Eco47I GGWCC 2 cut(s) 41, 380
Eco53kI GAGCTC 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 73
Eco91I GGTNACC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 390
EcoO65I GGTNACC 1 cut(s) 215
EcoT14I CCWWGG 3 cut(s) 61, 220, 383
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 3 cut(s) 61, 220, 383
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 2 cut(s) 199, 412
FaiI YATR 3 cut(s) 84, 197, 410
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 2 cut(s) 195, 408
FbaI TGATCA 2 cut(s) 13, 115
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 3 cut(s) 263, 284, 360
FokI GGATG 2 cut(s) 38, 356
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 3 cut(s) 263, 284, 360
FspBI CTAG 1 cut(s) 102
GluI GCNGC 3 cut(s) 263, 284, 360
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 49, 60
HapII CCGG 4 cut(s) 108, 164, 212, 249
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 2 cut(s) 199, 412
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 155
HpaII CCGG 4 cut(s) 108, 164, 212, 249
HphI GGTGA 2 cut(s) 161, 261
Hpy166II GTNNAC 3 cut(s) 44, 77, 336
Hpy188I TCNGA 4 cut(s) 98, 124, 343, 373
Hpy188III TCNNGA 2 cut(s) 196, 352
Hpy8I GTNNAC 3 cut(s) 44, 77, 336
Hpy99I CGWCG 2 cut(s) 340, 343
HpyAV CCTTC 2 cut(s) 97, 349
HpyCH4III ACNGT 3 cut(s) 34, 149, 333
HpyCH4IV ACGT 2 cut(s) 187, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 245
HpySE526I ACGT 2 cut(s) 187, 338
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 2 cut(s) 199, 412
Ksp22I TGATCA 2 cut(s) 13, 115
Kzo9I GATC 4 cut(s) 13, 115, 140, 368
LmnI GCTCC 3 cut(s) 110, 238, 387
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 102
MaeII ACGT 2 cut(s) 187, 338
MaeIII GTNAC 2 cut(s) 181, 215
MalI GATC 4 cut(s) 15, 117, 142, 370
MboI GATC 4 cut(s) 13, 115, 140, 368
MboII GAAGA 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 1 cut(s) 201
MmeI TCCRAC 2 cut(s) 121, 321
MnlI CCTC 3 cut(s) 145, 359, 405
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 4 cut(s) 108, 164, 212, 249
MspR9I CCNGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 134, 245
NciI CCSGG 1 cut(s) 213
NdeII GATC 4 cut(s) 13, 115, 140, 368
NlaIII CATG 2 cut(s) 199, 412
NlaIV GGNNCC 1 cut(s) 312
NspI RCATGY 1 cut(s) 412
PagI TCATGA 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 155
Pfl23II CGTACG 1 cut(s) 144
PkrI GCNGC 3 cut(s) 264, 285, 361
Ppu21I YACGTR 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 392
PspEI GGTNACC 1 cut(s) 215
PspLI CGTACG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 41, 380
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 1 cut(s) 392
SalI GTCGAC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 263, 284, 360
Sau3AI GATC 4 cut(s) 13, 115, 140, 368
Sau96I GGNCC 2 cut(s) 41, 380
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 392
SfaNI GCATC 1 cut(s) 334
SinI GGWCC 2 cut(s) 41, 380
Sse9I AATT 1 cut(s) 201
SsiI CCGC 4 cut(s) 260, 263, 281, 284
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 392
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 3 cut(s) 61, 220, 383
TaaI ACNGT 3 cut(s) 34, 149, 333
TaiI ACGT 2 cut(s) 190, 341
TaqI TCGA 2 cut(s) 335, 351
TasI AATT 1 cut(s) 201
TauI GCSGC 2 cut(s) 265, 286
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 180
TseI GCWGC 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 2 cut(s) 41, 380
XceI RCATGY 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.