Rw3G005870

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006178
Physical Location & Seq
Reverse (-)
5260469 .. 5261587
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005870.1

Sequence Viewer

Length: 390 bp
ATGGGCCTACTTGACCAGCTTTGGGACGACACCGTCGCTGGGCCTCGGCCAGACATCGGCCTCGGCAAGCTTCGGAAGACCCAATCTCTCGGCTTACGATCCAACTCCGGCAAGGGAGTTGATGGCGGGAGCGCGAGATCGTACGGTGAGGGCTCAACGGAAGAGGCGGCAAAAGTTACACGGAGTATTATGATAGTGAAACCCCCAGGATATGGGAGCGCCGGCAGTGATTCCACTCCGGCGTCACCAGCTGGATCTACTCCACCGGTGTCTCCCTTTTCTGGGAGTCATTTCGATTTCGAAGAAGATCCACGTCGGATGCGTACGAGAAGGCAACCGAGGTCATTGGAGCAAAGAGCACCCCATCTTCTTACGATGTGTGACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

129

Amino Acids

13.76

Weight (kDa)

8.93

Isoelectric Point (pI)

61.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 85 2e-09 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 212
AccII CGCG 1 cut(s) 134
AciI CCGC 2 cut(s) 126, 167
AclWI GGATC 3 cut(s) 93, 262, 302
AcoI YGGCCR 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 2 cut(s) 143, 325
AfiI CCNNNNNNNGG 6 cut(s) 22, 39, 56, 212, 281, 282
AgeI ACCGGT 1 cut(s) 265
AjiI CACGTC 1 cut(s) 314
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 19, 70, 251
AluI AGCT 3 cut(s) 19, 70, 251
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 3 cut(s) 93, 262, 302
AoxI GGCC 4 cut(s) 4, 41, 47, 58
AsiGI ACCGGT 1 cut(s) 265
AspLEI GCGC 2 cut(s) 134, 221
AspS9I GGNCC 2 cut(s) 4, 41
AsuHPI GGTGA 2 cut(s) 158, 237
AsuII TTCGAA 1 cut(s) 300
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 361
BccI CCATC 2 cut(s) 116, 372
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 2 cut(s) 4, 41
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 44, 61, 205, 338
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 39, 56, 212, 281, 282
Bse118I RCCGGY 2 cut(s) 221, 265
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 4 cut(s) 44, 61, 205, 338
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 6 cut(s) 22, 39, 56, 212, 281, 282
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 4 cut(s) 6, 43, 49, 60
BshTI ACCGGT 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 4 cut(s) 108, 222, 239, 266
BsiWI CGTACG 2 cut(s) 141, 323
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 6 cut(s) 22, 39, 56, 212, 281, 282
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 4 cut(s) 6, 43, 49, 60
Bsp119I TTCGAA 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 155, 361
Bsp143I GATC 4 cut(s) 98, 137, 254, 307
BspACI CCGC 2 cut(s) 126, 167
BspANI GGCC 4 cut(s) 6, 43, 49, 60
BspFNI CGCG 1 cut(s) 134
BspPI GGATC 3 cut(s) 93, 262, 302
BspT104I TTCGAA 1 cut(s) 300
BsrFI RCCGGY 2 cut(s) 221, 265
BssAI RCCGGY 2 cut(s) 221, 265
BssECI CCNNGG 4 cut(s) 44, 61, 205, 338
BssMI GATC 4 cut(s) 98, 137, 254, 307
BssNI GRCGYC 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 34, 146
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 68, 223
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 134, 221
BstKTI GATC 4 cut(s) 101, 140, 257, 310
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 4 cut(s) 98, 137, 254, 307
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 254, 307
BstYI RGATCY 2 cut(s) 254, 307
BsuRI GGCC 4 cut(s) 6, 43, 49, 60
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 68, 223
CfoI GCGC 2 cut(s) 134, 221
Cfr10I RCCGGY 2 cut(s) 221, 265
Cfr13I GGNCC 2 cut(s) 4, 41
CseI GACGC 1 cut(s) 231
Csp6I GTAC 2 cut(s) 142, 324
CspAI ACCGGT 1 cut(s) 265
CviJI RGCY 9 cut(s) 6, 19, 43, 49, 60, 70, 93, 153, 251
CviKI_1 RGCY 9 cut(s) 6, 19, 43, 49, 60, 70, 93, 153, 251
CviQI GTAC 2 cut(s) 142, 324
DpnI GATC 4 cut(s) 100, 139, 256, 309
DpnII GATC 4 cut(s) 98, 137, 254, 307
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 155
FaiI YATR 4 cut(s) 191, 213, 386, 388
FaqI GGGAC 1 cut(s) 38
FauI CCCGC 1 cut(s) 119
FauNDI CATATG 1 cut(s) 386
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 168
GlaI GCGC 2 cut(s) 133, 220
GluI GCNGC 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 4 cut(s) 6, 43, 49, 60
HapII CCGG 4 cut(s) 108, 222, 239, 266
HgaI GACGC 1 cut(s) 231
HhaI GCGC 2 cut(s) 134, 221
Hin1I GRCGYC 1 cut(s) 242
Hin6I GCGC 2 cut(s) 132, 219
HinP1I GCGC 2 cut(s) 132, 219
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 230, 286
HpaII CCGG 4 cut(s) 108, 222, 239, 266
HphI GGTGA 2 cut(s) 158, 237
Hpy188I TCNGA 2 cut(s) 75, 318
Hpy99I CGWCG 2 cut(s) 38, 318
HpyAV CCTTC 1 cut(s) 324
HpyCH4III ACNGT 2 cut(s) 34, 146
HpyCH4IV ACGT 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpySE526I ACGT 1 cut(s) 313
Hsp92I GRCGYC 1 cut(s) 242
HspAI GCGC 2 cut(s) 132, 219
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Kzo9I GATC 4 cut(s) 98, 137, 254, 307
LmnI GCTCC 3 cut(s) 129, 216, 349
LweI GCATC 1 cut(s) 309
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 3 cut(s) 175, 243, 380
MalI GATC 4 cut(s) 100, 139, 256, 309
MboI GATC 4 cut(s) 98, 137, 254, 307
MboII GAAGA 5 cut(s) 88, 173, 314, 317, 359
MflI RGATCY 2 cut(s) 254, 307
MhlI GDGCHC 2 cut(s) 155, 361
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 2 cut(s) 126, 296
MnlI CCTC 5 cut(s) 54, 71, 142, 157, 333
MroNI GCCGGC 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 4 cut(s) 108, 222, 239, 266
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 248
NaeI GCCGGC 1 cut(s) 223
NdeI CATATG 1 cut(s) 386
NdeII GATC 4 cut(s) 98, 137, 254, 307
NgoMIV GCCGGC 1 cut(s) 221
NmeAIII GCCGAG 3 cut(s) 25, 42, 69
NmuCI GTSAC 2 cut(s) 243, 380
NspV TTCGAA 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 319
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 230
Pfl23II CGTACG 2 cut(s) 141, 323
PflFI GACNNNGTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 212
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 205
PspLI CGTACG 2 cut(s) 141, 323
PspPI GGNCC 2 cut(s) 4, 41
PsuI RGATCY 2 cut(s) 254, 307
PsyI GACNNNGTC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 143, 325
RsaNI GTAC 2 cut(s) 142, 324
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 4 cut(s) 98, 137, 254, 307
Sau96I GGNCC 2 cut(s) 4, 41
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 155, 361
SetI ASST 5 cut(s) 21, 72, 253, 316, 344
SfaNI GCATC 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 300
SgrAI CRCCGGYG 1 cut(s) 265
SsiI CCGC 2 cut(s) 126, 167
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 34, 146
TaiI ACGT 1 cut(s) 316
TaqI TCGA 2 cut(s) 294, 300
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 2 cut(s) 243, 380
Tsp45I GTSAC 2 cut(s) 243, 380
TspGWI ACGGA 2 cut(s) 173, 196
TspRI CASTG 1 cut(s) 232
Tth111I GACNNNGTC 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.