Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006178

Physical Location & Seq

Genomic Coordinates Reverse (-)

967398 .. 969885

Gene Structure 2488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0012300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

ATGCCCAAGCAAAGCTATAGTTGCAAAAGAAACATGGGGATCAATTCTGGTGTTCCTTTTCCTTGCATTTTCTATGCTCTTCAGCTTTTTCTGTTGGCTCTCAATGTTAACACTTCTTTGGCAGAGAGATCCACTTATATTGTCCACATGGACAAGTGTCTCATGCCCAAGTTCTTCACTAGCCATCAACATTGGTATACCTCCGTTGTTGATTCCTTCAAAACTGAAATTCAAACCTCATCAGATAGCCACAGCTTCTCACCATCCCTTTTATACACCTATGACAATGCATTCCATGGTTTTTCTGCAGTTTTGTCTGTAGATGAACTCGAGACCCTCAGAAAGTCCCCGGGTTTTGTTTCGGCTTATAATGACAAAATTGTTACACTTGACACCACCCATACCAGTGAATTCCTCTCCCTCAGCCCTTCTACTGGCCTCTTGCCAGCCTCGAATTATGGAGAAGACATCATCATTGGTCTCATTGATACCGGTGTCTGGCCAGAGAGCGAGAGCTTCAAAGATGATGGTCTAACCAAAGACATTCCAACTAGGTGGAAGGGAACATGTGAGCTTGGACAAGAGTTCAATGCCTCTTTGTGTAACAAAAAGTTGATTGGAGCTAGATACTTTAACAAGGGAGTGCTCGCTGCAAACCCCGGCGTCACACTTAGCATGAACTCTGCTAGAGACACTGAAGGCCATGGGACACATACATCTTCCACTGCTGCAGGGAACTTTGTGAATGGGGCATCTTATTTTGGTTACGCTAAAGGAACAGCCAGAGGTGTCGCACCACGCTCAAGGGTTGCAATGTACAAAGTCCTTTGGGATGTAGGTAAGGGGAGTTACGCGTCTGATGTTCTAGCTGGTATAGACCAAGCCATTACTGATGGTGTGGATGTAATTTCCATTTCTATGGGGTTTGATGAAACGCCACTCTATGAAGATCCTATAGCAATAGCATCTTTTGCAGCCATGGAGAAGAAGGTGGTGGTTTCAACTTCAGCCGGAAACTTCGGCCGAGGTGGCCTTGGATGGTTGCACAATGGTATCCCTTGGGTCTTGACTGTTGCAGCTGGCACAATAGACCGCTCCTTTGGCGGAACATTAACTCTTGATAATGGTGCAACCATTACTGGGTTTACCTTGTTACCAGCAAATGCCATAGTAGAAAAGGTTCCACTGGTTTACAACAAGACCTTCTCAGCTTGCAACTCGACAAAGGTATTATCAAATGCTCCAGAGGGAGTCATCATCATATGTGACGAGAGTCATGCTATTCGGGGTCAGATATCTAAGTTCATTGGATCACATGTGCTTGGGGCTGTCTTTATTGGCAAATATCCTGAAATATTTGAGTTGGGAAGTGTGACATTTCCTCTCGTAGTGGTAAGTCCAGAAGATGCACTGGGTTTAATCAAGTATGTTACAACTAGTGTTAAACCTTCTGTGAGCATGAAATTCCAACAAACATTTGTTGGCACAAAGCCTGCACCGGCTGCTTCATTTTACACTTCAAGAGGTCCTTCATCAAGTTATCCGGGTATCTTGAAGCCGGACATAATGGCACCGGGGTCATTAGTTTTGGCTGCATGGCCTCCGAATGTTGCAGCAGGCCAAATTGGATCAAATGTGATGTTACCAAGTGATTACAATTTGATATCTGGCACATCCATGGCTTGTCCTCATGCTTCAGGCGTAGCGGCTTTATTGAAAGGTGCACACCCGAAATGGAGTGCAGCCGCCATTAGGTCTGCTTTGGTCACCACAGCCAACCCCTTAGACAATACTCAGAATCTGATTCGTGACAATGGTGACAATTTCAACTTTGCTTCACCTCTAGCTATGGGAGCAGGCCAGATTGATCCTAATAGAGCACTTGAACCCGGTTTGATATATGATGCAACCCCACAAGATTATGTCAATCTCTTGTGCTCCACAAATTTTACCCGTAAGCAAATCTTAGCCATTACTAGATCACGTGCCTATGCTTGTTCCAACCCATCTTCTGATCTGAACTATCCCTCCTTCATTGCTTTGTATGATCATCATCATCACACAAGGAAACTAAGGGTCCAAAATTTTCAGAGGATAGTAACAAATGTGGGAGATGGTGCAGCTAAGTACAAGGCTTCAGTGACAGCTCCAAAGGGTTCTATAGTAACAGTGTCACCGGAGACATTGTTCTTTTCAGAGACATATGAGAAGCGAAGCTACACTCTTACTATAAATTACAAGGGAGAAAAGAAAGGAAATGTGTCATTTGGTGAACTTGTTTGGGTGGAAGAAAATGGAAAGTACAATGTCAGGAGCCCCATTGTAGTGTCACCTCTTGTTTCAGTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

783

Amino Acids

84.21

Weight (kDa)

7.59

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	45 - 130	5.7e-17	Peptidase inhibitor I9
Peptidase_S8	PF00082	154 - 599	2.6e-42	Subtilase family
fn3_6	PF17766	672 - 776	5.6e-28	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56220 AT1G56220 AT1G56220 AT1G56220 AT1G56220
fragaria_vesca	FvH4_6g06830
malus_domestica	MD04G1198800.v1.1 MD12G1212000.v1.1
prunus_persica	Prupe.6G319600_v2.0.a1 Prupe.6G319600_v2.0.a1
pyrus_communis	pycom04g17570 pycom12g19830
rosa_chinensis	RchiOBHm_Chr3g0456211
rosa_laevigata	RLG00000025315
rosa_multiflora	Rmu_sc0000279.1_g000062 Rmu_sc0002607.1_g000041
rosa_roxburghii	Rroxscaffold_6G00422920 Rroxscaffold_6G00423710
rosa_rugosa	Rorug03G0012200 Rorug03G0012300 Rorug03G0012400
rosa_samantha	Rh3AG072400 Rh3BG074400 Rh3CG073900 Rh3DG075700
rosa_wichuraiana	Rw3G005870 Rw3G006170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	1570
AccBSI	CCGCTC	1 cut(s)	1095
AccI	GTMKAC	1 cut(s)	197
AccII	CGCG	1 cut(s)	854
AciI	CCGC	4 cut(s)	1093, 1104, 1706, 1746
AclWI	GGATC	6 cut(s)	47, 123, 944, 1318, 1636, 1862
AcoI	YGGCCR	2 cut(s)	500, 1021
AcsI	RAATTY	5 cut(s)	228, 410, 1463, 1945, 2083
AcuI	CTGAAG	5 cut(s)	65, 717, 990, 1680, 2121
AcvI	CACGTG	1 cut(s)	1985
AcyI	GRCGYC	1 cut(s)	663
AfaI	GTAC	3 cut(s)	818, 2129, 2303
AfiI	CCNNNNNNNGG	4 cut(s)	434, 498, 1140, 1752
AflIII	ACRYGT	3 cut(s)	566, 852, 1315
AgeI	ACCGGT	1 cut(s)	491
AhlI	ACTAGT	1 cut(s)	1436
AloI	GAACNNNNNNTCC	4 cut(s)	2012, 2044, 2171, 2203
Alw21I	GWGCWC	4 cut(s)	648, 1726, 1882, 1940
Alw26I	GTCTC	6 cut(s)	164, 326, 485, 684, 2174, 2192
Alw44I	GTGCAC	1 cut(s)	1722
AlwI	GGATC	6 cut(s)	47, 123, 944, 1318, 1636, 1862
AlwNI	CAGNNNCTG	1 cut(s)	1801
Ama87I	CYCGRG	2 cut(s)	329, 349
AoxI	GGCC	8 cut(s)	436, 500, 700, 1021, 1030, 1598, 1618, 1858
ApaLI	GTGCAC	1 cut(s)	1722
ApeKI	GCWGC	9 cut(s)	650, 728, 974, 1076, 1502, 1592, 1613, 1742, 2120
ApoI	RAATTY	5 cut(s)	228, 410, 1463, 1945, 2083
ArsI	GACNNNNNNTTYG	2 cut(s)	1082, 1114
AsiGI	ACCGGT	1 cut(s)	491
Asp700I	GAANNNNTTC	1 cut(s)	1179
AspS9I	GGNCC	2 cut(s)	1526, 2077
AsuC2I	CCSGG	6 cut(s)	350, 351, 660, 1545, 1575, 1890
AsuHPI	GGTGA	7 cut(s)	252, 1759, 1829, 1830, 2166, 2282, 2322
AvaI	CYCGRG	2 cut(s)	329, 349
AvaII	GGWCC	2 cut(s)	1526, 2077
BaeGI	GKGCMC	1 cut(s)	1726
BaeI	ACNNNNGTAYC	4 cut(s)	480, 513, 1036, 1069
BalI	TGGCCA	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	1570
BanII	GRGCYC	1 cut(s)	2318
BarI	GAAGNNNNNNTAC	2 cut(s)	2201, 2233
BbrPI	CACGTG	1 cut(s)	1985
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	4 cut(s)	648, 1726, 1882, 1940
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	9 cut(s)	637, 715, 986, 1088, 1489, 1579, 1625, 1754, 2132
BccI	CCATC	7 cut(s)	192, 271, 521, 887, 1032, 2014, 2108
BcgI	CGANNNNNNTGC	2 cut(s)	1259, 1293
BciVI	GTATCC	1 cut(s)	1064
BclI	TGATCA	1 cut(s)	2047
BcnI	CCSGG	6 cut(s)	350, 351, 660, 1545, 1575, 1890
BcoDI	GTCTC	6 cut(s)	164, 326, 485, 684, 2174, 2192
BcuI	ACTAGT	1 cut(s)	1436
BfaI	CTAG	8 cut(s)	180, 552, 624, 687, 866, 1437, 1844, 1977
BfmI	CTRYAG	6 cut(s)	16, 306, 318, 729, 954, 2160
BfuI	GTATCC	1 cut(s)	1064
BglI	GCCNNNNNGGC	1 cut(s)	1029
Bme1390I	CCNGG	6 cut(s)	350, 351, 660, 1545, 1575, 1890
Bme18I	GGWCC	2 cut(s)	1526, 2077
BmeT110I	CYCGRG	2 cut(s)	329, 349
BmgT120I	GGNCC	2 cut(s)	1526, 2077
BmiI	GGNNCC	4 cut(s)	1182, 1572, 2078, 2315
BmrFI	CCNGG	6 cut(s)	350, 351, 660, 1545, 1575, 1890
BmrI	ACTGGG	2 cut(s)	1149, 1421
BmsI	GCATC	4 cut(s)	761, 974, 1396, 1894
BmuI	ACTGGG	2 cut(s)	1149, 1421
BoxI	GACNNNNGTC	2 cut(s)	156, 1272
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	1227
Bpu10I	CCTNAGC	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	787
BpuMI	CCSGG	6 cut(s)	350, 351, 660, 1545, 1575, 1890
BsaAI	YACGTR	1 cut(s)	1985
BsaBI	GATNNNNATC	1 cut(s)	2052
BsaHI	GRCGYC	1 cut(s)	663
BsaI	GGTCTC	2 cut(s)	326, 485
BsaWI	WCCGGW	2 cut(s)	491, 2176
BsaXI	ACNNNNNCTCC	4 cut(s)	2012, 2042, 2171, 2201
Bsc4I	CCNNNNNNNGG	4 cut(s)	434, 498, 1140, 1752
Bse118I	RCCGGY	2 cut(s)	491, 1498
Bse1I	ACTGG	5 cut(s)	405, 439, 1144, 1191, 1416
Bse3DI	GCAATG	2 cut(s)	819, 2034
Bse8I	GATNNNNATC	1 cut(s)	2052
BseGI	GGATG	5 cut(s)	263, 838, 907, 1043, 1673
BseJI	GATNNNNATC	1 cut(s)	2052
BseLI	CCNNNNNNNGG	4 cut(s)	434, 498, 1140, 1752
BseMI	GCAATG	2 cut(s)	819, 2034
BseMII	CTCAG	4 cut(s)	352, 436, 1221, 1808
BseNI	ACTGG	5 cut(s)	405, 439, 1144, 1191, 1416
BseSI	GKGCMC	1 cut(s)	1726
BseX3I	CGGCCG	1 cut(s)	1021
BseXI	GCAGC	9 cut(s)	637, 715, 986, 1088, 1489, 1579, 1625, 1754, 2132
BsgI	GTGCAG	3 cut(s)	1479, 1761, 2139
Bsh1236I	CGCG	1 cut(s)	854
Bsh1285I	CGRYCG	1 cut(s)	1024
BshFI	GGCC	8 cut(s)	438, 502, 702, 1023, 1032, 1600, 1620, 1860
BshNI	GGYRCC	1 cut(s)	1570
BshTI	ACCGGT	1 cut(s)	491
BsiEI	CGRYCG	1 cut(s)	1024
BsiHKAI	GWGCWC	4 cut(s)	648, 1726, 1882, 1940
BsiHKCI	CYCGRG	2 cut(s)	329, 349
BslFI	GGGAC	2 cut(s)	331, 721
BslI	CCNNNNNNNGG	4 cut(s)	434, 498, 1140, 1752
BsmAI	GTCTC	6 cut(s)	164, 326, 485, 684, 2174, 2192
BsmFI	GGGAC	2 cut(s)	331, 721
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	8 cut(s)	438, 502, 702, 1023, 1032, 1600, 1620, 1860
Bso31I	GGTCTC	2 cut(s)	326, 485
BsoBI	CYCGRG	2 cut(s)	329, 349
Bsp1286I	GDGCHC	5 cut(s)	648, 1726, 1882, 1940, 2318
Bsp1407I	TGTACA	1 cut(s)	816
Bsp143I	GATC	9 cut(s)	39, 128, 949, 1310, 1628, 1867, 1979, 2014, 2047
Bsp19I	CCATGG	4 cut(s)	295, 703, 978, 1677
BspACI	CCGC	4 cut(s)	1093, 1104, 1706, 1746
BspANI	GGCC	8 cut(s)	438, 502, 702, 1023, 1032, 1600, 1620, 1860
BspCNI	CTCAG	4 cut(s)	351, 435, 1220, 1807
BspFNI	CGCG	1 cut(s)	854
BspLI	GGNNCC	4 cut(s)	1182, 1572, 2078, 2315
BspMAI	CTGCAG	2 cut(s)	310, 733
BspPI	GGATC	6 cut(s)	47, 123, 944, 1318, 1636, 1862
BspQI	GCTCTTC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	1570
BspTNI	GGTCTC	2 cut(s)	326, 485
BsrBI	CCGCTC	1 cut(s)	1095
BsrDI	GCAATG	2 cut(s)	819, 2034
BsrFI	RCCGGY	2 cut(s)	491, 1498
BsrGI	TGTACA	1 cut(s)	816
BsrI	ACTGG	5 cut(s)	405, 439, 1144, 1191, 1416
BssAI	RCCGGY	2 cut(s)	491, 1498
BssMI	GATC	9 cut(s)	39, 128, 949, 1310, 1628, 1867, 1979, 2014, 2047
BssNAI	GTATAC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	663
BssT1I	CCWWGG	6 cut(s)	295, 703, 978, 1033, 1058, 1677
Bst1107I	GTATAC	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	1072, 2170
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	663
BstAPI	GCANNNNNTGC	2 cut(s)	971, 1502
BstAUI	TGTACA	1 cut(s)	816
BstBAI	YACGTR	1 cut(s)	1985
BstC8I	GCNNGC	7 cut(s)	447, 648, 1081, 1213, 1494, 1618, 1858
BstDSI	CCRYGG	4 cut(s)	295, 703, 978, 1677
BstEII	GGTNACC	1 cut(s)	1765
BstF5I	GGATG	5 cut(s)	263, 838, 907, 1043, 1673
BstFNI	CGCG	1 cut(s)	854
BstKTI	GATC	9 cut(s)	42, 131, 952, 1313, 1631, 1870, 1982, 2017, 2050
BstMAI	GTCTC	6 cut(s)	164, 326, 485, 684, 2174, 2192
BstMBI	GATC	9 cut(s)	39, 128, 949, 1310, 1628, 1867, 1979, 2014, 2047
BstMCI	CGRYCG	1 cut(s)	1024
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 971, 1029, 1101, 1502, 1853
BstNSI	RCATGY	2 cut(s)	570, 1319
BstPAI	GACNNNNGTC	2 cut(s)	156, 1272
BstPI	GGTNACC	1 cut(s)	1765
BstSCI	CCNGG	6 cut(s)	348, 349, 658, 1543, 1573, 1888
BstSFI	CTRYAG	6 cut(s)	16, 306, 318, 729, 954, 2160
BstSLI	GKGCMC	1 cut(s)	1726
BstUI	CGCG	1 cut(s)	854
BstV1I	GCAGC	9 cut(s)	637, 715, 986, 1088, 1489, 1579, 1625, 1754, 2132
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	2 cut(s)	128, 949
BstXI	CCANNNNNNTGG	2 cut(s)	555, 919
BstYI	RGATCY	2 cut(s)	128, 949
BstZ17I	GTATAC	1 cut(s)	198
BstZI	CGGCCG	1 cut(s)	1021
BsuI	GTATCC	1 cut(s)	1064
BsuRI	GGCC	8 cut(s)	438, 502, 702, 1023, 1032, 1600, 1620, 1860
BtgI	CCRYGG	4 cut(s)	295, 703, 978, 1677
BtsCI	GGATG	5 cut(s)	263, 838, 907, 1043, 1673
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	8 cut(s)	412, 693, 723, 1184, 1409, 2145, 2175, 2349
Cac8I	GCNNGC	7 cut(s)	447, 648, 1081, 1213, 1494, 1618, 1858
CaiI	CAGNNNCTG	1 cut(s)	1801
Cfr10I	RCCGGY	2 cut(s)	491, 1498
Cfr13I	GGNCC	2 cut(s)	1526, 2077
Cfr9I	CCCGGG	1 cut(s)	349
CseI	GACGC	2 cut(s)	652, 843
Csp6I	GTAC	3 cut(s)	817, 2128, 2302
CspAI	ACCGGT	1 cut(s)	491
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviQI	GTAC	3 cut(s)	817, 2128, 2302
DpnI	GATC	9 cut(s)	41, 130, 951, 1312, 1630, 1869, 1981, 2016, 2049
DpnII	GATC	9 cut(s)	39, 128, 949, 1310, 1628, 1867, 1979, 2014, 2047
EaeI	YGGCCR	2 cut(s)	500, 1021
EagI	CGGCCG	1 cut(s)	1021
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	1119
EclXI	CGGCCG	1 cut(s)	1021
Eco130I	CCWWGG	6 cut(s)	295, 703, 978, 1033, 1058, 1677
Eco24I	GRGCYC	1 cut(s)	2318
Eco31I	GGTCTC	2 cut(s)	326, 485
Eco32I	GATATC	2 cut(s)	1296, 1665
Eco47I	GGWCC	2 cut(s)	1526, 2077
Eco52I	CGGCCG	1 cut(s)	1021
Eco57I	CTGAAG	5 cut(s)	65, 717, 990, 1680, 2121
Eco72I	CACGTG	1 cut(s)	1985
Eco88I	CYCGRG	2 cut(s)	329, 349
Eco91I	GGTNACC	1 cut(s)	1765
EcoO109I	RGGNCCY	1 cut(s)	1526
EcoO65I	GGTNACC	1 cut(s)	1765
EcoRI	GAATTC	1 cut(s)	410
EcoRV	GATATC	2 cut(s)	1296, 1665
EcoT14I	CCWWGG	6 cut(s)	295, 703, 978, 1033, 1058, 1677
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	2318
ErhI	CCWWGG	6 cut(s)	295, 703, 978, 1033, 1058, 1677
FalI	AAGNNNNNCTT	4 cut(s)	1513, 1545, 1949, 1981
FaqI	GGGAC	2 cut(s)	331, 721
FauNDI	CATATG	2 cut(s)	1262, 2203
FbaI	TGATCA	1 cut(s)	2047
FblI	GTMKAC	1 cut(s)	197
FokI	GGATG	5 cut(s)	250, 845, 914, 1050, 1660
FriOI	GRGCYC	1 cut(s)	2318
FspBI	CTAG	8 cut(s)	180, 552, 624, 687, 866, 1437, 1844, 1977
GsuI	CTGGAG	1 cut(s)	1227
HaeIII	GGCC	8 cut(s)	438, 502, 702, 1023, 1032, 1600, 1620, 1860
HgaI	GACGC	2 cut(s)	652, 843
Hin1I	GRCGYC	1 cut(s)	663
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	5 cut(s)	212, 1251, 1273, 1798, 1804
HpaI	GTTAAC	1 cut(s)	109
HphI	GGTGA	7 cut(s)	252, 1759, 1829, 1830, 2166, 2282, 2322
Hpy166II	GTNNAC	7 cut(s)	109, 145, 198, 1146, 1192, 1724, 2273
Hpy8I	GTNNAC	7 cut(s)	109, 145, 198, 1146, 1192, 1724, 2273
HpyAV	CCTTC	9 cut(s)	226, 438, 553, 692, 982, 1213, 1458, 1539, 2041
HpyCH4III	ACNGT	2 cut(s)	1072, 2170
HpyCH4IV	ACGT	1 cut(s)	1984
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 971, 1029, 1101, 1502, 1853
HpySE526I	ACGT	1 cut(s)	1984
Hsp92I	GRCGYC	1 cut(s)	663
Ksp22I	TGATCA	1 cut(s)	2047
KspAI	GTTAAC	1 cut(s)	109
Kzo9I	GATC	9 cut(s)	39, 128, 949, 1310, 1628, 1867, 1979, 2014, 2047
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	7 cut(s)	620, 1100, 1246, 1853, 1943, 2152, 2313
Lsp1109I	GCAGC	9 cut(s)	637, 715, 986, 1088, 1489, 1579, 1625, 1754, 2132
LweI	GCATC	4 cut(s)	761, 974, 1396, 1894
MaeI	CTAG	8 cut(s)	180, 552, 624, 687, 866, 1437, 1844, 1977
MaeII	ACGT	1 cut(s)	1984
MalI	GATC	9 cut(s)	41, 130, 951, 1312, 1630, 1869, 1981, 2016, 2049
MbiI	CCGCTC	1 cut(s)	1095
MboI	GATC	9 cut(s)	39, 128, 949, 1310, 1628, 1867, 1979, 2014, 2047
MboII	GAAGA	9 cut(s)	71, 166, 476, 711, 959, 997, 1415, 2001, 2300
MflI	RGATCY	2 cut(s)	128, 949
MhlI	GDGCHC	5 cut(s)	648, 1726, 1882, 1940, 2318
MlsI	TGGCCA	1 cut(s)	502
MluI	ACGCGT	1 cut(s)	852
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	2 cut(s)	1260, 1282
MmeI	TCCRAC	3 cut(s)	572, 1492, 2025
Mox20I	TGGCCA	1 cut(s)	502
Mph1103I	ATGCAT	1 cut(s)	292
MroXI	GAANNNNTTC	1 cut(s)	1179
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	6 cut(s)	108, 633, 1112, 1418, 1443, 2350
MslI	CAYNNNNRTG	4 cut(s)	405, 917, 1676, 2324
Msp20I	TGGCCA	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	1079
MspR9I	CCNGG	6 cut(s)	350, 351, 660, 1545, 1575, 1890
Mva1269I	GAATGC	1 cut(s)	290
MvnI	CGCG	1 cut(s)	854
MwoI	GCNNNNNNNGC	6 cut(s)	21, 971, 1029, 1101, 1502, 1853
NciI	CCSGG	6 cut(s)	350, 351, 660, 1545, 1575, 1890
NcoI	CCATGG	4 cut(s)	295, 703, 978, 1677
NdeI	CATATG	2 cut(s)	1262, 2203
NdeII	GATC	9 cut(s)	39, 128, 949, 1310, 1628, 1867, 1979, 2014, 2047
NlaIV	GGNNCC	4 cut(s)	1182, 1572, 2078, 2315
NmeAIII	GCCGAG	1 cut(s)	1049
NmuCI	GTSAC	9 cut(s)	664, 1265, 1372, 1765, 1808, 1817, 2140, 2172, 2328
NsiI	ATGCAT	1 cut(s)	292
NspI	RCATGY	2 cut(s)	570, 1319
PaeR7I	CTCGAG	1 cut(s)	329
PciI	ACATGT	2 cut(s)	566, 1315
PciSI	GCTCTTC	1 cut(s)	84
PctI	GAATGC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	1179
PfeI	GAWTC	3 cut(s)	212, 1798, 1804
PinAI	ACCGGT	1 cut(s)	491
PleI	GAGTC	2 cut(s)	1259, 1281
PmaCI	CACGTG	1 cut(s)	1985
PmlI	CACGTG	1 cut(s)	1985
PpsI	GAGTC	2 cut(s)	1259, 1281
Ppu21I	YACGTR	1 cut(s)	1985
PpuMI	RGGWCCY	1 cut(s)	1526
PscI	ACATGT	2 cut(s)	566, 1315
PshAI	GACNNNNGTC	2 cut(s)	156, 1272
PsiI	TTATAA	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	1526
PspCI	CACGTG	1 cut(s)	1985
PspEI	GGTNACC	1 cut(s)	1765
PspN4I	GGNNCC	4 cut(s)	1182, 1572, 2078, 2315
PspPI	GGNCC	2 cut(s)	1526, 2077
PspPPI	RGGWCCY	1 cut(s)	1526
PsrI	GAACNNNNNNTAC	2 cut(s)	1164, 1196
PstI	CTGCAG	2 cut(s)	310, 733
PstNI	CAGNNNCTG	1 cut(s)	1801
PsuI	RGATCY	2 cut(s)	128, 949
PvuII	CAGCTG	1 cut(s)	1079
RsaI	GTAC	3 cut(s)	818, 2129, 2303
RsaNI	GTAC	3 cut(s)	817, 2128, 2302
RseI	CAYNNNNRTG	4 cut(s)	405, 917, 1676, 2324
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	6 cut(s)	108, 633, 1112, 1418, 1443, 2350
Sau3AI	GATC	9 cut(s)	39, 128, 949, 1310, 1628, 1867, 1979, 2014, 2047
Sau96I	GGNCC	2 cut(s)	1526, 2077
SchI	GAGTC	2 cut(s)	1260, 1282
ScrFI	CCNGG	6 cut(s)	350, 351, 660, 1545, 1575, 1890
SduI	GDGCHC	5 cut(s)	648, 1726, 1882, 1940, 2318
SfaNI	GCATC	4 cut(s)	761, 974, 1396, 1894
SfcI	CTRYAG	6 cut(s)	16, 306, 318, 729, 954, 2160
SfiI	GGCCNNNNNGGCC	1 cut(s)	1029
Sfr274I	CTCGAG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	1526, 2077
SlaI	CTCGAG	1 cut(s)	329
SmaI	CCCGGG	1 cut(s)	351
SmiMI	CAYNNNNRTG	4 cut(s)	405, 917, 1676, 2324
SmlI	CTYRAG	2 cut(s)	329, 802
SmoI	CTYRAG	2 cut(s)	329, 802
SpeI	ACTAGT	1 cut(s)	1436
SsiI	CCGC	4 cut(s)	1093, 1104, 1706, 1746
SspI	AATATT	1 cut(s)	1356
SspMI	CTAG	8 cut(s)	180, 552, 624, 687, 866, 1437, 1844, 1977
StyD4I	CCNGG	6 cut(s)	348, 349, 658, 1543, 1573, 1888
StyI	CCWWGG	6 cut(s)	295, 703, 978, 1033, 1058, 1677
TaaI	ACNGT	2 cut(s)	1072, 2170
TaiI	ACGT	1 cut(s)	1987
TaqI	TCGA	3 cut(s)	330, 452, 1220
TatI	WGTACW	3 cut(s)	816, 2127, 2301
TauI	GCSGC	2 cut(s)	1709, 1748
TfiI	GAWTC	3 cut(s)	212, 1798, 1804
Tru1I	TTAA	6 cut(s)	108, 633, 1112, 1418, 1443, 2350
Tru9I	TTAA	6 cut(s)	108, 633, 1112, 1418, 1443, 2350
TscAI	CASTG	8 cut(s)	412, 700, 730, 1191, 1416, 2145, 2175, 2349
TseFI	GTSAC	9 cut(s)	664, 1265, 1372, 1765, 1808, 1817, 2140, 2172, 2328
TseI	GCWGC	9 cut(s)	650, 728, 974, 1076, 1502, 1592, 1613, 1742, 2120
Tsp45I	GTSAC	9 cut(s)	664, 1265, 1372, 1765, 1808, 1817, 2140, 2172, 2328
TspDTI	ATGAA	9 cut(s)	339, 692, 945, 960, 1294, 1475, 1497, 1521, 2023
TspGWI	ACGGA	1 cut(s)	193
TspMI	CCCGGG	1 cut(s)	349
TspRI	CASTG	8 cut(s)	412, 700, 730, 1191, 1416, 2145, 2175, 2349
VneI	GTGCAC	1 cut(s)	1722
VpaK11BI	GGWCC	2 cut(s)	1526, 2077
XapI	RAATTY	5 cut(s)	228, 410, 1463, 1945, 2083
XceI	RCATGY	2 cut(s)	570, 1319
XhoI	CTCGAG	1 cut(s)	329
XmaI	CCCGGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	1179
XspI	CTAG	8 cut(s)	180, 552, 624, 687, 866, 1437, 1844, 1977
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.