Rh3DG075700

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0006178
Physical Location & Seq
Reverse (-)
5730330 .. 5732357
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG075700.1

Sequence Viewer

Length: 345 bp
ATGGGCCTACTTGACCAGCTTTGGGACGACACCGTCGCTGGGCCTCGGCCAGACATCGGCCTCGGCAAGCTTCGGAAGACCCAATCTCTCGGCTTACGATCCAACTCCGGCAAGGGAGTTGATGGCGGGAGCGCGAGATCGTACGGTGAGGGCTCAACGGAAGAGGCGGCAAAAGTTACACGGAGTATTATGATAGTGAAACCCCCAGGATATGGGAGCGGCGGCAGCGATTCCACTCCGGCGTCACCAGCTGGATCTACTCCACCGGTGTCTCCCTTTTCTGGTAAGCCTCTGAAATGTCATATATGCCCTTGGTTGACTACTTTTGCACGTAGATTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

114

Amino Acids

11.89

Weight (kDa)

9.75

Isoelectric Point (pI)

58.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 85 3.2e-09 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 1 cut(s) 134
AciI CCGC 4 cut(s) 126, 167, 219, 222
AclWI GGATC 2 cut(s) 93, 262
AcoI YGGCCR 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
AgeI ACCGGT 1 cut(s) 265
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 19, 70, 251
AluI AGCT 3 cut(s) 19, 70, 251
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 2 cut(s) 93, 262
AoxI GGCC 4 cut(s) 4, 41, 47, 58
ApeKI GCWGC 1 cut(s) 225
AsiGI ACCGGT 1 cut(s) 265
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 4, 41
AsuHPI GGTGA 2 cut(s) 158, 237
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 276
BisI GCNGC 4 cut(s) 168, 220, 223, 226
BlsI GCNGC 4 cut(s) 169, 221, 224, 227
Bme1390I CCNGG 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 4, 41
BmrFI CCNGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 44, 61, 205, 311
BsaWI WCCGGW 2 cut(s) 265, 339
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
Bse118I RCCGGY 1 cut(s) 265
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 4 cut(s) 44, 61, 205, 311
BseLI CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 4 cut(s) 6, 43, 49, 60
BshTI ACCGGT 1 cut(s) 265
BsiSI CCGG 4 cut(s) 108, 239, 266, 340
BsiWI CGTACG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 4 cut(s) 6, 43, 49, 60
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 98, 137, 254
BspACI CCGC 4 cut(s) 126, 167, 219, 222
BspANI GGCC 4 cut(s) 6, 43, 49, 60
BspFNI CGCG 1 cut(s) 134
BspPI GGATC 2 cut(s) 93, 262
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 4 cut(s) 44, 61, 205, 311
BssMI GATC 3 cut(s) 98, 137, 254
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 34, 146
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 68
BstFNI CGCG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 3 cut(s) 101, 140, 257
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 3 cut(s) 98, 137, 254
BstMWI GCNNNNNNNGC 2 cut(s) 225, 248
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 4 cut(s) 6, 43, 49, 60
Cac8I GCNNGC 1 cut(s) 68
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 4, 41
CseI GACGC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 142
CspAI ACCGGT 1 cut(s) 265
CviQI GTAC 1 cut(s) 142
DpnI GATC 3 cut(s) 100, 139, 256
DpnII GATC 3 cut(s) 98, 137, 254
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 311
FaiI YATR 5 cut(s) 191, 213, 303, 305, 307
FaqI GGGAC 1 cut(s) 38
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 4 cut(s) 168, 220, 223, 226
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 4 cut(s) 168, 220, 223, 226
GlaI GCGC 1 cut(s) 133
GluI GCNGC 4 cut(s) 168, 220, 223, 226
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 4 cut(s) 6, 43, 49, 60
HapII CCGG 4 cut(s) 108, 239, 266, 340
HgaI GACGC 1 cut(s) 231
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 242
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 230, 336
HpaII CCGG 4 cut(s) 108, 239, 266, 340
HphI GGTGA 2 cut(s) 158, 237
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 2 cut(s) 75, 294
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 34, 146
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 248
HpySE526I ACGT 1 cut(s) 331
Hsp92I GRCGYC 1 cut(s) 242
HspAI GCGC 1 cut(s) 132
Kzo9I GATC 3 cut(s) 98, 137, 254
LmnI GCTCC 2 cut(s) 129, 216
Lsp1109I GCAGC 1 cut(s) 237
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 2 cut(s) 175, 243
MalI GATC 3 cut(s) 100, 139, 256
MbiI CCGCTC 1 cut(s) 219
MboI GATC 3 cut(s) 98, 137, 254
MboII GAAGA 2 cut(s) 88, 173
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 5 cut(s) 54, 71, 142, 157, 300
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 4 cut(s) 108, 239, 266, 340
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 225, 248
NdeII GATC 3 cut(s) 98, 137, 254
NmeAIII GCCGAG 3 cut(s) 25, 42, 69
NmuCI GTSAC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 230, 336
Pfl23II CGTACG 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 212
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 4 cut(s) 169, 221, 224, 227
Ppu21I YACGTR 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 205
PspLI CGTACG 1 cut(s) 141
PspPI GGNCC 2 cut(s) 4, 41
PsuI RGATCY 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 4 cut(s) 168, 220, 223, 226
Sau3AI GATC 3 cut(s) 98, 137, 254
Sau96I GGNCC 2 cut(s) 4, 41
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 155
SetI ASST 4 cut(s) 21, 72, 253, 334
SgrAI CRCCGGYG 1 cut(s) 265
SsiI CCGC 4 cut(s) 126, 167, 219, 222
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 34, 146
TaiI ACGT 1 cut(s) 334
TauI GCSGC 3 cut(s) 170, 222, 225
TfiI GAWTC 2 cut(s) 230, 336
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 243
TspGWI ACGGA 2 cut(s) 173, 196
Tth111I GACNNNGTC 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.