Rh3AG072400

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006178
Physical Location & Seq
Reverse (-)
5756811 .. 5757978
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG072400.1

Sequence Viewer

Length: 387 bp
ATGGGCCTACTTGACCAGCTTTGGGACGACACCGTCGCTGGGCCTCGGCCAGACATCGGCCTCGGCAAGCTTCGGAAGACCCAATCTCTCGGCTTACGATCCAACACCGGCAAGGGAGTTGATGGCGGAAGCGTGAGATCGTACGGTGAGGGCTCAACGGAAGAGGCGGCAAAAGTTACACGGAGTATTATGATAGTGAAACCCCCAGGATATGGGAGCGGCGGCAGCGATTCCACTCCGGCGTCACCAGCTGGATCTACTCCACCGGTGTCTCCCTTTTCTGGCAGGGAGTCATTTCGATTTCGAAGAAGATCCACGTCGGATGCTTACGAGAAGGCAAGCGAGGTCATTGGAGCAAAGAGCACCCCATCTTCTTACGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

128

Amino Acids

13.34

Weight (kDa)

9.34

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 89 1.6e-09 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 219
AciI CCGC 4 cut(s) 126, 167, 219, 222
AclWI GGATC 3 cut(s) 93, 262, 306
AcoI YGGCCR 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
AgeI ACCGGT 1 cut(s) 265
AjiI CACGTC 1 cut(s) 318
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 19, 70, 251
AluI AGCT 3 cut(s) 19, 70, 251
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 3 cut(s) 93, 262, 306
AoxI GGCC 4 cut(s) 4, 41, 47, 58
ApeKI GCWGC 1 cut(s) 225
AsiGI ACCGGT 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 4, 41
AsuHPI GGTGA 2 cut(s) 158, 237
AsuII TTCGAA 1 cut(s) 304
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 237
BccI CCATC 2 cut(s) 116, 376
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 276
BisI GCNGC 4 cut(s) 168, 220, 223, 226
BlsI GCNGC 4 cut(s) 169, 221, 224, 227
Bme1390I CCNGG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 4, 41
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 44, 61, 205
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
Bse118I RCCGGY 2 cut(s) 107, 265
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 44, 61, 205
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 38
BshFI GGCC 4 cut(s) 6, 43, 49, 60
BshTI ACCGGT 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 3 cut(s) 108, 239, 266
BsiWI CGTACG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 4 cut(s) 6, 43, 49, 60
Bsp119I TTCGAA 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 155, 365
Bsp143I GATC 4 cut(s) 98, 137, 254, 311
BspACI CCGC 4 cut(s) 126, 167, 219, 222
BspANI GGCC 4 cut(s) 6, 43, 49, 60
BspPI GGATC 3 cut(s) 93, 262, 306
BspT104I TTCGAA 1 cut(s) 304
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 2 cut(s) 107, 265
BssAI RCCGGY 2 cut(s) 107, 265
BssECI CCNNGG 3 cut(s) 44, 61, 205
BssMI GATC 4 cut(s) 98, 137, 254, 311
BssNI GRCGYC 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 34, 146
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 68, 340
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 4 cut(s) 101, 140, 257, 314
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 4 cut(s) 98, 137, 254, 311
BstMWI GCNNNNNNNGC 2 cut(s) 225, 248
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 254, 311
BstYI RGATCY 2 cut(s) 254, 311
BsuRI GGCC 4 cut(s) 6, 43, 49, 60
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 68, 340
Cfr10I RCCGGY 2 cut(s) 107, 265
Cfr13I GGNCC 2 cut(s) 4, 41
CseI GACGC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 142
CspAI ACCGGT 1 cut(s) 265
CviJI RGCY 9 cut(s) 6, 19, 43, 49, 60, 70, 93, 153, 251
CviKI_1 RGCY 9 cut(s) 6, 19, 43, 49, 60, 70, 93, 153, 251
CviQI GTAC 1 cut(s) 142
DpnI GATC 4 cut(s) 100, 139, 256, 313
DpnII GATC 4 cut(s) 98, 137, 254, 311
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 155
FaiI YATR 2 cut(s) 191, 213
FaqI GGGAC 1 cut(s) 38
Fnu4HI GCNGC 4 cut(s) 168, 220, 223, 226
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 4 cut(s) 168, 220, 223, 226
GluI GCNGC 4 cut(s) 168, 220, 223, 226
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 4 cut(s) 6, 43, 49, 60
HapII CCGG 3 cut(s) 108, 239, 266
HgaI GACGC 1 cut(s) 231
Hin1I GRCGYC 1 cut(s) 242
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 230, 290
HpaII CCGG 3 cut(s) 108, 239, 266
HphI GGTGA 2 cut(s) 158, 237
Hpy188I TCNGA 2 cut(s) 75, 322
Hpy99I CGWCG 2 cut(s) 38, 322
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 34, 146
HpyCH4IV ACGT 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 248
HpySE526I ACGT 1 cut(s) 317
Hsp92I GRCGYC 1 cut(s) 242
Kzo9I GATC 4 cut(s) 98, 137, 254, 311
LmnI GCTCC 2 cut(s) 216, 353
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 313
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 175, 243
MalI GATC 4 cut(s) 100, 139, 256, 313
MbiI CCGCTC 1 cut(s) 219
MboI GATC 4 cut(s) 98, 137, 254, 311
MboII GAAGA 5 cut(s) 88, 173, 318, 321, 363
MflI RGATCY 2 cut(s) 254, 311
MhlI GDGCHC 2 cut(s) 155, 365
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 126, 300
MnlI CCTC 5 cut(s) 54, 71, 142, 157, 337
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 3 cut(s) 108, 239, 266
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 225, 248
NdeII GATC 4 cut(s) 98, 137, 254, 311
NmeAIII GCCGAG 3 cut(s) 25, 42, 69
NmuCI GTSAC 1 cut(s) 243
NspV TTCGAA 1 cut(s) 304
PfeI GAWTC 1 cut(s) 230
Pfl23II CGTACG 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 212
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 4 cut(s) 169, 221, 224, 227
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 205
PspLI CGTACG 1 cut(s) 141
PspPI GGNCC 2 cut(s) 4, 41
PsuI RGATCY 2 cut(s) 254, 311
PsyI GACNNNGTC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 4 cut(s) 168, 220, 223, 226
Sau3AI GATC 4 cut(s) 98, 137, 254, 311
Sau96I GGNCC 2 cut(s) 4, 41
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 155, 365
SetI ASST 5 cut(s) 21, 72, 253, 320, 348
SfaNI GCATC 1 cut(s) 313
SfuI TTCGAA 1 cut(s) 304
SgrAI CRCCGGYG 1 cut(s) 265
SsiI CCGC 4 cut(s) 126, 167, 219, 222
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 34, 146
TaiI ACGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 298, 304
TauI GCSGC 3 cut(s) 170, 222, 225
TfiI GAWTC 1 cut(s) 230
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 243
TspGWI ACGGA 2 cut(s) 173, 196
Tth111I GACNNNGTC 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.