pycom04g17570

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0006178
Physical Location & Seq
Reverse (-)
19905517 .. 19906623
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17570.1

Sequence Viewer

Length: 420 bp
ATGGGCCTACTTGATCAGCTTTGGGACGACACCCTCGCCGGGCCTCAGCCCGACAGCGGTCTCGGGAAACTTCGCAAGCACAAAACCTTCAGTTTCCGGTCCAGCTCAGCCACTGGATCGTCAGATGGCGGAAACGTAAGATCGTTCGATGGGAATTCGCCGGAAGAGGCTAAAGTTACGCGGAGTATTATGATAGTGAAGCCCCCAGGTTATGGGAGCGGTAACGGCGGATCAGCTCCGGTTTCGCCAGCTGGGGTTACTTCTCCAATTTCGCCAGCTGGGTCTACGCCGCCGGTGTCCCCGTTTTCTGGTGGCAGGGAGCCATTCGGGCGGTTTCGAAGGAAGTCAGGGTCGGATGCATACGAGAAGGCGAGCCAGGTCGTTGGAGGAAGGAGCGCCCGTTCTCCTTACGACGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

140

Amino Acids

14.32

Weight (kDa)

9.81

Isoelectric Point (pI)

75.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 124 1.8e-08 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 219
AccI GTMKAC 1 cut(s) 284
AccII CGCG 1 cut(s) 181
AciI CCGC 7 cut(s) 57, 129, 181, 219, 228, 290, 331
AclWI GGATC 2 cut(s) 124, 238
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 73
AfiI CCNNNNNNNGG 4 cut(s) 39, 56, 212, 308
AflIII ACRYGT 1 cut(s) 414
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 2 cut(s) 205, 375
AloI GAACNNNNNNTCC 2 cut(s) 385, 417
AluBI AGCT 5 cut(s) 19, 105, 236, 251, 278
AluI AGCT 5 cut(s) 19, 105, 236, 251, 278
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 2 cut(s) 124, 238
AlwNI CAGNNNCTG 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 2 cut(s) 4, 41
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 3 cut(s) 4, 41, 99
AsuC2I CCSGG 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 45
BccI CCATC 2 cut(s) 119, 143
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 2 cut(s) 207, 377
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 65
BfoI RGCGCY 1 cut(s) 399
BglI GCCNNNNNGGC 1 cut(s) 328
BisI GCNGC 1 cut(s) 290
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 291
Bme1390I CCNGG 3 cut(s) 40, 207, 377
Bme18I GGWCC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 3 cut(s) 4, 41, 99
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 3 cut(s) 40, 207, 377
BmsI GCATC 1 cut(s) 346
BoxI GACNNNNGTC 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 45
Bpu1102I GCTNAGC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 2 cut(s) 96, 238
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 56, 212, 308
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 118
BseBI CCWGG 2 cut(s) 207, 377
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 4 cut(s) 39, 56, 212, 308
BseMII CTCAG 2 cut(s) 59, 120
BseNI ACTGG 1 cut(s) 118
BseYI CCCAGC 2 cut(s) 251, 278
Bsh1236I CGCG 1 cut(s) 181
BshFI GGCC 2 cut(s) 6, 43
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 5 cut(s) 39, 97, 161, 239, 293
BslFI GGGAC 2 cut(s) 38, 283
BslI CCNNNNNNNGG 4 cut(s) 39, 56, 212, 308
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 2 cut(s) 38, 283
BsnI GGCC 2 cut(s) 6, 43
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 337
Bsp143I GATC 4 cut(s) 13, 116, 140, 230
Bsp1720I GCTNAGC 1 cut(s) 106
BspACI CCGC 7 cut(s) 57, 129, 181, 219, 228, 290, 331
BspANI GGCC 2 cut(s) 6, 43
BspCNI CTCAG 2 cut(s) 58, 119
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 2 cut(s) 124, 238
BspT104I TTCGAA 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 4 cut(s) 13, 116, 140, 230
Bst2UI CCWGG 2 cut(s) 207, 377
Bst6I CTCTTC 1 cut(s) 159
BstBI TTCGAA 1 cut(s) 337
BstC8I GCNNGC 4 cut(s) 77, 249, 276, 373
BstDEI CTNAG 2 cut(s) 45, 106
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 181
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 4 cut(s) 16, 119, 143, 233
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 4 cut(s) 13, 116, 140, 230
BstMWI GCNNNNNNNGC 2 cut(s) 225, 328
BstNI CCWGG 2 cut(s) 207, 377
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 38, 205, 375
BstUI CGCG 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 383
BsuRI GGCC 2 cut(s) 6, 43
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 4 cut(s) 77, 249, 276, 373
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 3 cut(s) 4, 41, 99
DdeI CTNAG 2 cut(s) 45, 106
DpnI GATC 4 cut(s) 15, 118, 142, 232
DpnII GATC 4 cut(s) 13, 116, 140, 230
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
EciI GGCGGA 2 cut(s) 144, 243
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 205, 375
EcoT22I ATGCAT 1 cut(s) 361
FaiI YATR 3 cut(s) 191, 213, 361
FaqI GGGAC 2 cut(s) 38, 283
FbaI TGATCA 1 cut(s) 13
FblI GTMKAC 1 cut(s) 284
Fnu4HI GCNGC 1 cut(s) 290
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 290
GlaI GCGC 1 cut(s) 397
GluI GCNGC 1 cut(s) 290
GsaI CCCAGC 2 cut(s) 255, 282
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 2 cut(s) 6, 43
HapII CCGG 5 cut(s) 39, 97, 161, 239, 293
HhaI GCGC 1 cut(s) 398
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HpaII CCGG 5 cut(s) 39, 97, 161, 239, 293
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 2 cut(s) 124, 355
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 4 cut(s) 97, 333, 361, 384
HpyCH4IV ACGT 2 cut(s) 135, 414
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 328
HpyF3I CTNAG 2 cut(s) 45, 106
HpySE526I ACGT 2 cut(s) 135, 414
HspAI GCGC 1 cut(s) 396
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 13, 116, 140, 230
LmnI GCTCC 4 cut(s) 216, 241, 319, 393
LweI GCATC 1 cut(s) 346
MaeII ACGT 2 cut(s) 135, 414
MaeIII GTNAC 3 cut(s) 175, 221, 256
MalI GATC 4 cut(s) 15, 118, 142, 232
MbiI CCGCTC 1 cut(s) 219
MboI GATC 4 cut(s) 13, 116, 140, 230
MboII GAAGA 1 cut(s) 176
MluCI AATT 2 cut(s) 154, 267
MmeI TCCRAC 2 cut(s) 333, 364
MnlI CCTC 4 cut(s) 44, 54, 160, 380
Mph1103I ATGCAT 1 cut(s) 361
MspA1I CMGCKG 3 cut(s) 57, 251, 278
MspI CCGG 5 cut(s) 39, 97, 161, 239, 293
MspR9I CCNGG 3 cut(s) 40, 207, 377
MvaI CCWGG 2 cut(s) 207, 377
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 225, 328
NciI CCSGG 1 cut(s) 40
NdeII GATC 4 cut(s) 13, 116, 140, 230
NlaIV GGNNCC 1 cut(s) 321
NsiI ATGCAT 1 cut(s) 361
NspV TTCGAA 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 212
PkrI GCNGC 1 cut(s) 291
PshAI GACNNNNGTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 205, 375
PspFI CCCAGC 2 cut(s) 251, 278
PspGI CCWGG 2 cut(s) 205, 375
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 3 cut(s) 4, 41, 99
PstNI CAGNNNCTG 1 cut(s) 113
PvuII CAGCTG 2 cut(s) 251, 278
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 4 cut(s) 13, 116, 140, 230
Sau96I GGNCC 3 cut(s) 4, 41, 99
ScrFI CCNGG 3 cut(s) 40, 207, 377
SfaNI GCATC 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 337
SgrAI CRCCGGYG 1 cut(s) 292
SinI GGWCC 1 cut(s) 99
Sse9I AATT 2 cut(s) 154, 267
SsiI CCGC 7 cut(s) 57, 129, 181, 219, 228, 290, 331
StyD4I CCNGG 3 cut(s) 38, 205, 375
TaiI ACGT 2 cut(s) 138, 417
TaqI TCGA 2 cut(s) 147, 337
TasI AATT 2 cut(s) 154, 267
TauI GCSGC 1 cut(s) 292
TscAI CASTG 1 cut(s) 118
TspRI CASTG 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.