Rroxscaffold_6G00422920

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006178
Physical Location & Seq
Forward (+)
43672426 .. 43674105
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00422920.1

Sequence Viewer

Length: 396 bp
ATGGGCCTACTTGACCAGCTTTGGGACGACACCGTCGCTGGGCCTCGGCCAGACATCGGCCTCGGCAAGCTTCGGAAGACCCAATCCTTGGGTTTACGATCCAACTCCGGCAAGGGAGTTGATGGCGGGAGCGCGAGATCGTACGGTGAGGGCTCAACGGAAGAGGCGGCAAAAGTTACACGGAGTATTATGATAGTGAAACCCCCAGGATATGGGAGCGGCGGCGGCGGCGGCGATTCCACTCCGGCGTCGCCAGCTGGATCTACTCCACCGGTGTCCCCCTTTTCTGGAGGCAGGGAGTCGTTTCGATTTCGAAGAAGATCCACGTCGGATGCCTACGAGAAGGCAAGCGCGGTCATTGGAGCAAAGAGCCCCCCATCTTCTTACGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

131

Amino Acids

13.38

Weight (kDa)

9.57

Isoelectric Point (pI)

66.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 86 1.9e-08 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccB7I CCANNNNNTGG 2 cut(s) 88, 212
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 2 cut(s) 134, 353
AciI CCGC 8 cut(s) 126, 167, 219, 222, 225, 228, 231, 353
AclWI GGATC 3 cut(s) 93, 268, 315
AcoI YGGCCR 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 6 cut(s) 22, 39, 56, 88, 212, 287
AgeI ACCGGT 1 cut(s) 271
AjiI CACGTC 1 cut(s) 327
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 19, 70, 257
AluI AGCT 3 cut(s) 19, 70, 257
AlwI GGATC 3 cut(s) 93, 268, 315
AoxI GGCC 4 cut(s) 4, 41, 47, 58
AsiGI ACCGGT 1 cut(s) 271
AspLEI GCGC 2 cut(s) 134, 353
AspS9I GGNCC 2 cut(s) 4, 41
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 313
BanII GRGCYC 2 cut(s) 155, 374
BbsI GAAGAC 1 cut(s) 83
BccI CCATC 2 cut(s) 116, 385
BciT130I CCWGG 1 cut(s) 207
BisI GCNGC 6 cut(s) 168, 220, 223, 226, 229, 232
BlsI GCNGC 6 cut(s) 169, 221, 224, 227, 230, 233
Bme1390I CCNGG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 4, 41
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 313
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 4 cut(s) 44, 61, 87, 205
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 39, 56, 88, 212, 287
Bse118I RCCGGY 1 cut(s) 271
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 4 cut(s) 44, 61, 87, 205
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 6 cut(s) 22, 39, 56, 88, 212, 287
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 2 cut(s) 134, 353
BshFI GGCC 4 cut(s) 6, 43, 49, 60
BshTI ACCGGT 1 cut(s) 271
BsiSI CCGG 3 cut(s) 108, 245, 272
BsiWI CGTACG 1 cut(s) 141
BslFI GGGAC 2 cut(s) 38, 262
BslI CCNNNNNNNGG 6 cut(s) 22, 39, 56, 88, 212, 287
BsmFI GGGAC 2 cut(s) 38, 262
BsnI GGCC 4 cut(s) 6, 43, 49, 60
Bsp119I TTCGAA 1 cut(s) 313
Bsp1286I GDGCHC 2 cut(s) 155, 374
Bsp143I GATC 4 cut(s) 98, 137, 260, 320
BspACI CCGC 8 cut(s) 126, 167, 219, 222, 225, 228, 231, 353
BspANI GGCC 4 cut(s) 6, 43, 49, 60
BspFNI CGCG 2 cut(s) 134, 353
BspPI GGATC 3 cut(s) 93, 268, 315
BspT104I TTCGAA 1 cut(s) 313
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 4 cut(s) 44, 61, 87, 205
BssMI GATC 4 cut(s) 98, 137, 260, 320
BssNI GRCGYC 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 34, 146
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 313
BstC8I GCNNGC 3 cut(s) 68, 255, 349
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 2 cut(s) 134, 353
BstHHI GCGC 2 cut(s) 134, 353
BstKTI GATC 4 cut(s) 101, 140, 263, 323
BstMBI GATC 4 cut(s) 98, 137, 260, 320
BstMWI GCNNNNNNNGC 4 cut(s) 225, 228, 231, 254
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 2 cut(s) 134, 353
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 260, 320
BstYI RGATCY 2 cut(s) 260, 320
BsuRI GGCC 4 cut(s) 6, 43, 49, 60
BtrI CACGTC 1 cut(s) 327
BtsCI GGATG 1 cut(s) 337
Cac8I GCNNGC 3 cut(s) 68, 255, 349
CfoI GCGC 2 cut(s) 134, 353
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 4, 41
CseI GACGC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 142
CspAI ACCGGT 1 cut(s) 271
CviJI RGCY 9 cut(s) 6, 19, 43, 49, 60, 70, 153, 257, 372
CviKI_1 RGCY 9 cut(s) 6, 19, 43, 49, 60, 70, 153, 257, 372
CviQI GTAC 1 cut(s) 142
DpnI GATC 4 cut(s) 100, 139, 262, 322
DpnII GATC 4 cut(s) 98, 137, 260, 320
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 2 cut(s) 155, 374
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 2 cut(s) 155, 374
ErhI CCWWGG 1 cut(s) 87
FaiI YATR 2 cut(s) 191, 213
FaqI GGGAC 2 cut(s) 38, 262
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 6 cut(s) 168, 220, 223, 226, 229, 232
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 2 cut(s) 155, 374
Fsp4HI GCNGC 6 cut(s) 168, 220, 223, 226, 229, 232
GlaI GCGC 2 cut(s) 133, 352
GluI GCNGC 6 cut(s) 168, 220, 223, 226, 229, 232
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 4 cut(s) 6, 43, 49, 60
HapII CCGG 3 cut(s) 108, 245, 272
HgaI GACGC 1 cut(s) 237
HhaI GCGC 2 cut(s) 134, 353
Hin1I GRCGYC 1 cut(s) 248
Hin6I GCGC 2 cut(s) 132, 351
HinP1I GCGC 2 cut(s) 132, 351
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 236, 299
HpaII CCGG 3 cut(s) 108, 245, 272
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 75, 331
Hpy188III TCNNGA 1 cut(s) 288
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 3 cut(s) 38, 253, 331
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 2 cut(s) 34, 146
HpyCH4IV ACGT 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 228, 231, 254
HpySE526I ACGT 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 248
HspAI GCGC 2 cut(s) 132, 351
Kzo9I GATC 4 cut(s) 98, 137, 260, 320
LmnI GCTCC 3 cut(s) 129, 216, 362
LweI GCATC 1 cut(s) 322
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 175
MalI GATC 4 cut(s) 100, 139, 262, 322
MbiI CCGCTC 1 cut(s) 219
MboI GATC 4 cut(s) 98, 137, 260, 320
MboII GAAGA 5 cut(s) 88, 173, 327, 330, 372
MflI RGATCY 2 cut(s) 260, 320
MhlI GDGCHC 2 cut(s) 155, 374
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 2 cut(s) 126, 309
MnlI CCTC 5 cut(s) 54, 71, 142, 157, 284
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 3 cut(s) 108, 245, 272
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 2 cut(s) 134, 353
MwoI GCNNNNNNNGC 4 cut(s) 225, 228, 231, 254
NdeII GATC 4 cut(s) 98, 137, 260, 320
NmeAIII GCCGAG 2 cut(s) 25, 42
NspV TTCGAA 1 cut(s) 313
PfeI GAWTC 1 cut(s) 236
Pfl23II CGTACG 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 32
PflMI CCANNNNNTGG 2 cut(s) 88, 212
PinAI ACCGGT 1 cut(s) 271
PkrI GCNGC 6 cut(s) 169, 221, 224, 227, 230, 233
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 205
PspLI CGTACG 1 cut(s) 141
PspPI GGNCC 2 cut(s) 4, 41
PsuI RGATCY 2 cut(s) 260, 320
PsyI GACNNNGTC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 6 cut(s) 168, 220, 223, 226, 229, 232
Sau3AI GATC 4 cut(s) 98, 137, 260, 320
Sau96I GGNCC 2 cut(s) 4, 41
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 155, 374
SetI ASST 4 cut(s) 21, 72, 259, 329
SfaNI GCATC 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 313
SgrAI CRCCGGYG 1 cut(s) 271
SsiI CCGC 8 cut(s) 126, 167, 219, 222, 225, 228, 231, 353
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 34, 146
TaiI ACGT 1 cut(s) 329
TaqI TCGA 2 cut(s) 307, 313
TauI GCSGC 6 cut(s) 170, 222, 225, 228, 231, 234
TfiI GAWTC 1 cut(s) 236
TspGWI ACGGA 2 cut(s) 173, 196
Tth111I GACNNNGTC 1 cut(s) 32
Van91I CCANNNNNTGG 2 cut(s) 88, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.