Rroxscaffold_6G00423710

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006178
Physical Location & Seq
Forward (+)
44740204 .. 44741705
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423710.1

Sequence Viewer

Length: 399 bp
ATGGGCCTACTTGACCAGCTTTGGGACGACACCGTCGCTGGGCCTCGGCCAGACATCGGCCTCGGCAAGCTTCGGAAGACCCAATCCTTGGGTTTACGATCCAACTCCGGCAAGGGAGTTGATGGCGGGAGCGCGAGATCGTACGGTGAGGGCTCAACGGAAGAGGCGGCAAAAGTTACACGGAGTATTATGATAGTGAAACCCCCAGGATATGGGAGCAGCGGCGGCGGCGGCAGCGATTCCACTCCGGCGTCGCCAGCTGGATCTACTCCACCGGTGTCTCCCTTTTCTGGAGGCAGGGAGTCATTTCGATTTCGAAGAAGATCCACGTCGGATGCCTACGAGAAGGCAGGCGCGGTCATTGGAGCAAAGAGCACCCCATCTTCTTACGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

132

Amino Acids

13.47

Weight (kDa)

9.57

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 88 1.4e-08 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccB7I CCANNNNNTGG 2 cut(s) 88, 212
AccII CGCG 2 cut(s) 134, 356
AciI CCGC 7 cut(s) 126, 167, 222, 225, 228, 231, 356
AclWI GGATC 3 cut(s) 93, 271, 318
AcoI YGGCCR 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 6 cut(s) 22, 39, 56, 88, 212, 290
AgeI ACCGGT 1 cut(s) 274
AjiI CACGTC 1 cut(s) 330
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 19, 70, 260
AluI AGCT 3 cut(s) 19, 70, 260
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 3 cut(s) 93, 271, 318
AoxI GGCC 4 cut(s) 4, 41, 47, 58
ApeKI GCWGC 2 cut(s) 219, 234
AsiGI ACCGGT 1 cut(s) 274
AspLEI GCGC 2 cut(s) 134, 356
AspS9I GGNCC 2 cut(s) 4, 41
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 316
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 2 cut(s) 231, 246
BccI CCATC 2 cut(s) 116, 388
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 285
BisI GCNGC 7 cut(s) 168, 220, 223, 226, 229, 232, 235
BlsI GCNGC 7 cut(s) 169, 221, 224, 227, 230, 233, 236
Bme1390I CCNGG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 330
BmgT120I GGNCC 2 cut(s) 4, 41
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 251
BsaJI CCNNGG 4 cut(s) 44, 61, 87, 205
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 39, 56, 88, 212, 290
Bse118I RCCGGY 1 cut(s) 274
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 4 cut(s) 44, 61, 87, 205
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 6 cut(s) 22, 39, 56, 88, 212, 290
BseXI GCAGC 2 cut(s) 231, 246
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 2 cut(s) 134, 356
BshFI GGCC 4 cut(s) 6, 43, 49, 60
BshTI ACCGGT 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 3 cut(s) 108, 248, 275
BsiWI CGTACG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 6 cut(s) 22, 39, 56, 88, 212, 290
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 4 cut(s) 6, 43, 49, 60
Bsp119I TTCGAA 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 155, 377
Bsp143I GATC 4 cut(s) 98, 137, 263, 323
BspACI CCGC 7 cut(s) 126, 167, 222, 225, 228, 231, 356
BspANI GGCC 4 cut(s) 6, 43, 49, 60
BspFNI CGCG 2 cut(s) 134, 356
BspPI GGATC 3 cut(s) 93, 271, 318
BspT104I TTCGAA 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 4 cut(s) 44, 61, 87, 205
BssMI GATC 4 cut(s) 98, 137, 263, 323
BssNI GRCGYC 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 34, 146
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 316
BstC8I GCNNGC 3 cut(s) 68, 258, 352
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 2 cut(s) 134, 356
BstHHI GCGC 2 cut(s) 134, 356
BstKTI GATC 4 cut(s) 101, 140, 266, 326
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 4 cut(s) 98, 137, 263, 323
BstMWI GCNNNNNNNGC 5 cut(s) 225, 228, 231, 234, 257
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 2 cut(s) 134, 356
BstV1I GCAGC 2 cut(s) 231, 246
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 263, 323
BstYI RGATCY 2 cut(s) 263, 323
BsuRI GGCC 4 cut(s) 6, 43, 49, 60
BtrI CACGTC 1 cut(s) 330
BtsCI GGATG 1 cut(s) 340
Cac8I GCNNGC 3 cut(s) 68, 258, 352
CfoI GCGC 2 cut(s) 134, 356
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 4, 41
CseI GACGC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 142
CspAI ACCGGT 1 cut(s) 274
CviJI RGCY 8 cut(s) 6, 19, 43, 49, 60, 70, 153, 260
CviKI_1 RGCY 8 cut(s) 6, 19, 43, 49, 60, 70, 153, 260
CviQI GTAC 1 cut(s) 142
DpnI GATC 4 cut(s) 100, 139, 265, 325
DpnII GATC 4 cut(s) 98, 137, 263, 323
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 87
FaiI YATR 2 cut(s) 191, 213
FaqI GGGAC 1 cut(s) 38
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 7 cut(s) 168, 220, 223, 226, 229, 232, 235
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 7 cut(s) 168, 220, 223, 226, 229, 232, 235
GlaI GCGC 2 cut(s) 133, 355
GluI GCNGC 7 cut(s) 168, 220, 223, 226, 229, 232, 235
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 4 cut(s) 6, 43, 49, 60
HapII CCGG 3 cut(s) 108, 248, 275
HgaI GACGC 1 cut(s) 240
HhaI GCGC 2 cut(s) 134, 356
Hin1I GRCGYC 1 cut(s) 251
Hin6I GCGC 2 cut(s) 132, 354
HinP1I GCGC 2 cut(s) 132, 354
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 239, 302
HpaII CCGG 3 cut(s) 108, 248, 275
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 75, 334
Hpy188III TCNNGA 1 cut(s) 291
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 3 cut(s) 38, 256, 334
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 2 cut(s) 34, 146
HpyCH4IV ACGT 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 5 cut(s) 225, 228, 231, 234, 257
HpySE526I ACGT 1 cut(s) 329
Hsp92I GRCGYC 1 cut(s) 251
HspAI GCGC 2 cut(s) 132, 354
Kzo9I GATC 4 cut(s) 98, 137, 263, 323
LmnI GCTCC 3 cut(s) 129, 216, 365
Lsp1109I GCAGC 2 cut(s) 231, 246
LweI GCATC 1 cut(s) 325
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 175
MalI GATC 4 cut(s) 100, 139, 265, 325
MboI GATC 4 cut(s) 98, 137, 263, 323
MboII GAAGA 5 cut(s) 88, 173, 330, 333, 375
MflI RGATCY 2 cut(s) 263, 323
MhlI GDGCHC 2 cut(s) 155, 377
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 2 cut(s) 126, 312
MnlI CCTC 5 cut(s) 54, 71, 142, 157, 287
MspA1I CMGCKG 2 cut(s) 222, 260
MspI CCGG 3 cut(s) 108, 248, 275
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 2 cut(s) 134, 356
MwoI GCNNNNNNNGC 5 cut(s) 225, 228, 231, 234, 257
NdeII GATC 4 cut(s) 98, 137, 263, 323
NmeAIII GCCGAG 2 cut(s) 25, 42
NspV TTCGAA 1 cut(s) 316
PfeI GAWTC 1 cut(s) 239
Pfl23II CGTACG 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 32
PflMI CCANNNNNTGG 2 cut(s) 88, 212
PinAI ACCGGT 1 cut(s) 274
PkrI GCNGC 7 cut(s) 169, 221, 224, 227, 230, 233, 236
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 205
PspLI CGTACG 1 cut(s) 141
PspPI GGNCC 2 cut(s) 4, 41
PsuI RGATCY 2 cut(s) 263, 323
PsyI GACNNNGTC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 7 cut(s) 168, 220, 223, 226, 229, 232, 235
Sau3AI GATC 4 cut(s) 98, 137, 263, 323
Sau96I GGNCC 2 cut(s) 4, 41
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 155, 377
SetI ASST 4 cut(s) 21, 72, 262, 332
SfaNI GCATC 1 cut(s) 325
SfuI TTCGAA 1 cut(s) 316
SgrAI CRCCGGYG 1 cut(s) 274
SsiI CCGC 7 cut(s) 126, 167, 222, 225, 228, 231, 356
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 34, 146
TaiI ACGT 1 cut(s) 332
TaqI TCGA 2 cut(s) 310, 316
TauI GCSGC 5 cut(s) 170, 225, 228, 231, 234
TfiI GAWTC 1 cut(s) 239
TseI GCWGC 2 cut(s) 219, 234
TspGWI ACGGA 2 cut(s) 173, 196
Tth111I GACNNNGTC 1 cut(s) 32
Van91I CCANNNNNTGG 2 cut(s) 88, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.