Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000279.1

Orthogroup ID

OG0006178

Physical Location & Seq

Genomic Coordinates Reverse (-)

225421 .. 226556

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000279.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgggcctacttgaccagctttgggacgacaccgtcgctgggcctcggccagacatcggcctcggcaagcttcggaagacccaatctctcggcttacgatccaactccggcaagggagttgatggcgggagcgcgagatcgtacggtgagggctcaacggaagaggcggcaaaagttacgcggagtattatgatagtgaaacccccaggatatgggagcgccggcagcgattccactccggcgtcaccagctggatctactccaccggtgtcccccttttctggcagggagtcatttcgatttcgaagaagatccacgtcggatgcgtacgagaaggcaaccgaggtcattggagcaaagagcaccccatcttcttacgatgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

128

Amino Acids

13.33

Weight (kDa)

9.34

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56220 AT1G56220 AT1G56220 AT1G56220 AT1G56220
fragaria_vesca	FvH4_6g06830
malus_domestica	MD04G1198800.v1.1 MD12G1212000.v1.1
prunus_persica	Prupe.6G319600_v2.0.a1 Prupe.6G319600_v2.0.a1
pyrus_communis	pycom04g17570 pycom12g19830
rosa_chinensis	RchiOBHm_Chr3g0456211
rosa_laevigata	RLG00000025315
rosa_multiflora	Rmu_sc0000279.1_g000062 Rmu_sc0002607.1_g000041
rosa_roxburghii	Rroxscaffold_6G00422920 Rroxscaffold_6G00423710
rosa_rugosa	Rorug03G0012200 Rorug03G0012300 Rorug03G0012400
rosa_samantha	Rh3AG072400 Rh3BG074400 Rh3CG073900 Rh3DG075700
rosa_wichuraiana	Rw3G005870 Rw3G006170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	2 cut(s)	134, 181
AciI	CCGC	3 cut(s)	126, 167, 181
AclWI	GGATC	3 cut(s)	93, 262, 306
AcoI	YGGCCR	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	2 cut(s)	143, 329
AfiI	CCNNNNNNNGG	5 cut(s)	22, 39, 56, 212, 281
AgeI	ACCGGT	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	318
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	19, 70, 251
AluI	AGCT	3 cut(s)	19, 70, 251
Alw21I	GWGCWC	1 cut(s)	365
AlwI	GGATC	3 cut(s)	93, 262, 306
AoxI	GGCC	4 cut(s)	4, 41, 47, 58
ApeKI	GCWGC	1 cut(s)	225
AsiGI	ACCGGT	1 cut(s)	265
AspLEI	GCGC	2 cut(s)	134, 221
AspS9I	GGNCC	2 cut(s)	4, 41
AsuHPI	GGTGA	2 cut(s)	158, 237
AsuII	TTCGAA	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	2 cut(s)	116, 376
BciT130I	CCWGG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	222
BisI	GCNGC	2 cut(s)	168, 226
BlsI	GCNGC	2 cut(s)	169, 227
Bme1390I	CCNGG	1 cut(s)	207
BmgBI	CACGTC	1 cut(s)	318
BmgT120I	GGNCC	2 cut(s)	4, 41
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	83
Bpu14I	TTCGAA	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	4 cut(s)	44, 61, 205, 342
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 39, 56, 212, 281
Bse118I	RCCGGY	2 cut(s)	221, 265
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	4 cut(s)	44, 61, 205, 342
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	5 cut(s)	22, 39, 56, 212, 281
BseXI	GCAGC	1 cut(s)	237
BseYI	CCCAGC	1 cut(s)	38
Bsh1236I	CGCG	2 cut(s)	134, 181
BshFI	GGCC	4 cut(s)	6, 43, 49, 60
BshTI	ACCGGT	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	4 cut(s)	108, 222, 239, 266
BsiWI	CGTACG	2 cut(s)	141, 327
BslFI	GGGAC	2 cut(s)	38, 256
BslI	CCNNNNNNNGG	5 cut(s)	22, 39, 56, 212, 281
BsmFI	GGGAC	2 cut(s)	38, 256
BsnI	GGCC	4 cut(s)	6, 43, 49, 60
Bsp119I	TTCGAA	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	155, 365
Bsp143I	GATC	4 cut(s)	98, 137, 254, 311
BspACI	CCGC	3 cut(s)	126, 167, 181
BspANI	GGCC	4 cut(s)	6, 43, 49, 60
BspFNI	CGCG	2 cut(s)	134, 181
BspPI	GGATC	3 cut(s)	93, 262, 306
BspT104I	TTCGAA	1 cut(s)	304
BsrFI	RCCGGY	2 cut(s)	221, 265
BssAI	RCCGGY	2 cut(s)	221, 265
BssECI	CCNNGG	4 cut(s)	44, 61, 205, 342
BssMI	GATC	4 cut(s)	98, 137, 254, 311
BssNI	GRCGYC	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	34, 146
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	68, 223
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	134, 181
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	2 cut(s)	134, 221
BstKTI	GATC	4 cut(s)	101, 140, 257, 314
BstMBI	GATC	4 cut(s)	98, 137, 254, 311
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 248
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	2 cut(s)	134, 181
BstV1I	GCAGC	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	2 cut(s)	254, 311
BstYI	RGATCY	2 cut(s)	254, 311
BsuRI	GGCC	4 cut(s)	6, 43, 49, 60
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	68, 223
CfoI	GCGC	2 cut(s)	134, 221
Cfr10I	RCCGGY	2 cut(s)	221, 265
Cfr13I	GGNCC	2 cut(s)	4, 41
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	142, 328
CspAI	ACCGGT	1 cut(s)	265
CviJI	RGCY	9 cut(s)	6, 19, 43, 49, 60, 70, 93, 153, 251
CviKI_1	RGCY	9 cut(s)	6, 19, 43, 49, 60, 70, 93, 153, 251
CviQI	GTAC	2 cut(s)	142, 328
DpnI	GATC	4 cut(s)	100, 139, 256, 313
DpnII	GATC	4 cut(s)	98, 137, 254, 311
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	155
FaiI	YATR	2 cut(s)	191, 213
FaqI	GGGAC	2 cut(s)	38, 256
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	2 cut(s)	168, 226
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	168, 226
GlaI	GCGC	2 cut(s)	133, 220
GluI	GCNGC	2 cut(s)	168, 226
GsaI	CCCAGC	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	4 cut(s)	6, 43, 49, 60
HapII	CCGG	4 cut(s)	108, 222, 239, 266
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	2 cut(s)	134, 221
Hin1I	GRCGYC	1 cut(s)	242
Hin6I	GCGC	2 cut(s)	132, 219
HinP1I	GCGC	2 cut(s)	132, 219
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	230, 290
HpaII	CCGG	4 cut(s)	108, 222, 239, 266
HphI	GGTGA	2 cut(s)	158, 237
Hpy188I	TCNGA	2 cut(s)	75, 322
Hpy99I	CGWCG	2 cut(s)	38, 322
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	34, 146
HpyCH4IV	ACGT	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 248
HpySE526I	ACGT	1 cut(s)	317
Hsp92I	GRCGYC	1 cut(s)	242
HspAI	GCGC	2 cut(s)	132, 219
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	98, 137, 254, 311
LmnI	GCTCC	3 cut(s)	129, 216, 353
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	313
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	175, 243
MalI	GATC	4 cut(s)	100, 139, 256, 313
MboI	GATC	4 cut(s)	98, 137, 254, 311
MboII	GAAGA	5 cut(s)	88, 173, 318, 321, 363
MflI	RGATCY	2 cut(s)	254, 311
MhlI	GDGCHC	2 cut(s)	155, 365
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	126, 300
MnlI	CCTC	5 cut(s)	54, 71, 142, 157, 337
MroNI	GCCGGC	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	4 cut(s)	108, 222, 239, 266
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	2 cut(s)	134, 181
MwoI	GCNNNNNNNGC	2 cut(s)	225, 248
NaeI	GCCGGC	1 cut(s)	223
NdeII	GATC	4 cut(s)	98, 137, 254, 311
NgoMIV	GCCGGC	1 cut(s)	221
NmeAIII	GCCGAG	3 cut(s)	25, 42, 69
NmuCI	GTSAC	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	230
Pfl23II	CGTACG	2 cut(s)	141, 327
PflFI	GACNNNGTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	169, 227
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	205
PspLI	CGTACG	2 cut(s)	141, 327
PspPI	GGNCC	2 cut(s)	4, 41
PsuI	RGATCY	2 cut(s)	254, 311
PsyI	GACNNNGTC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	143, 329
RsaNI	GTAC	2 cut(s)	142, 328
SatI	GCNGC	2 cut(s)	168, 226
Sau3AI	GATC	4 cut(s)	98, 137, 254, 311
Sau96I	GGNCC	2 cut(s)	4, 41
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	155, 365
SetI	ASST	5 cut(s)	21, 72, 253, 320, 348
SfaNI	GCATC	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	304
SgrAI	CRCCGGYG	1 cut(s)	265
SsiI	CCGC	3 cut(s)	126, 167, 181
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	34, 146
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	2 cut(s)	298, 304
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.