Rorug03G0012200

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006178
Physical Location & Seq
Reverse (-)
950587 .. 951113
527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0012200.1

Sequence Viewer

Length: 516 bp
ATGGGAGCAGGCCAGATTGATCCTAATAGAGCACTTGAACCCGGTTTGATATATGATGCAACCCCACAAGACTACGTCAATGTCTTGTGCTCCACAAATTTTACCCGTAAGCAAATCTTAGCCATCACTAGATCACGTGCCTATGATTGTTCCAACCCATCTTCTGATCTGAATTATCCCTCCTTCATTGCTTTGTATGATCGTCATCGTCACACAAGGAAACCAAGGGTCCAAAAATTTCAGAGGATAGTAACAAATGTGGGAGATAGTGCAGCTAAGTACAAGCCTTCAGTGACAGCTACAAAGGGCTCTACACTAACAGTGTCACCGGAGACATTGTTCTTTTCAGAGACATATGAGAAGCGAAGCTACACTCTTACTATAAATTACAAGGGAGAAAAGAAAGGAAATGCATCATTTGGTGAACTTGTTTGGGTGGAAGAAAATGGAAAGTACGTACAGTTTCAAGAGCCCCATTGTAGTGTCGCCTCTTGTTTCAGTGTCTTAATTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

171

Amino Acids

19.28

Weight (kDa)

8.84

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 56 - 150 3.4e-23 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 2 cut(s) 97, 236
AcuI CTGAAG 1 cut(s) 273
AcvI CACGTG 1 cut(s) 137
AfaI GTAC 3 cut(s) 281, 455, 459
AgsI TTSAA 2 cut(s) 38, 467
AloI GAACNNNNNNTCC 2 cut(s) 323, 355
AluBI AGCT 3 cut(s) 275, 299, 369
AluI AGCT 3 cut(s) 275, 299, 369
Alw21I GWGCWC 2 cut(s) 34, 92
Alw26I GTCTC 2 cut(s) 326, 344
AlwI GGATC 1 cut(s) 14
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 2 cut(s) 97, 236
AspS9I GGNCC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 318, 434
AvaII GGWCC 1 cut(s) 229
BanII GRGCYC 2 cut(s) 311, 474
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbrPI CACGTG 1 cut(s) 137
Bbv12I GWGCWC 2 cut(s) 34, 92
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 131, 166
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 2 cut(s) 326, 344
BfaI CTAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 2 cut(s) 46, 422
BpuMI CCSGG 1 cut(s) 42
BsaAI YACGTR 2 cut(s) 137, 457
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 224
BseJI GATNNNNATC 1 cut(s) 204
BseMI GCAATG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 1 cut(s) 12
BsiHKAI GWGCWC 2 cut(s) 34, 92
BsiSI CCGG 2 cut(s) 42, 329
BsmAI GTCTC 2 cut(s) 326, 344
BsnI GGCC 1 cut(s) 12
Bsp1286I GDGCHC 4 cut(s) 34, 92, 311, 474
Bsp143I GATC 4 cut(s) 19, 131, 166, 199
BspANI GGCC 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 4 cut(s) 19, 131, 166, 199
BssT1I CCWWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 322, 462
BstBAI YACGTR 2 cut(s) 137, 457
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 118, 276
BstKTI GATC 4 cut(s) 22, 134, 169, 202
BstMAI GTCTC 2 cut(s) 326, 344
BstMBI GATC 4 cut(s) 19, 131, 166, 199
BstSCI CCNGG 1 cut(s) 40
BstSNI TACGTA 1 cut(s) 457
BstV1I GCAGC 1 cut(s) 284
BsuRI GGCC 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 297, 327, 505
Cac8I GCNNGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 3 cut(s) 280, 454, 458
CviJI RGCY 8 cut(s) 12, 122, 275, 286, 299, 309, 369, 472
CviKI_1 RGCY 8 cut(s) 12, 122, 275, 286, 299, 309, 369, 472
CviQI GTAC 3 cut(s) 280, 454, 458
DdeI CTNAG 2 cut(s) 118, 276
DpnI GATC 4 cut(s) 21, 133, 168, 201
DpnII GATC 4 cut(s) 19, 131, 166, 199
Eco105I TACGTA 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 224
Eco24I GRGCYC 2 cut(s) 311, 474
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 273
Eco72I CACGTG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 415
EcoT38I GRGCYC 2 cut(s) 311, 474
ErhI CCWWGG 1 cut(s) 224
FaiI YATR 7 cut(s) 52, 54, 144, 198, 355, 357, 383
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FauNDI CATATG 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 273
FriOI GRGCYC 2 cut(s) 311, 474
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 129
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 12
HapII CCGG 2 cut(s) 42, 329
HpaII CCGG 2 cut(s) 42, 329
HphI GGTGA 2 cut(s) 318, 434
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 4 cut(s) 166, 171, 243, 349
Hpy188III TCNNGA 1 cut(s) 467
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 2 cut(s) 193, 297
HpyCH4III ACNGT 2 cut(s) 322, 462
HpyCH4IV ACGT 3 cut(s) 75, 136, 456
HpyCH4V TGCA 3 cut(s) 59, 272, 413
HpyF3I CTNAG 2 cut(s) 118, 276
HpySE526I ACGT 3 cut(s) 75, 136, 456
Kzo9I GATC 4 cut(s) 19, 131, 166, 199
LmnI GCTCC 2 cut(s) 5, 95
LpnPI CCDG 3 cut(s) 26, 55, 342
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 2 cut(s) 46, 422
MaeI CTAG 1 cut(s) 129
MaeII ACGT 3 cut(s) 75, 136, 456
MaeIII GTNAC 4 cut(s) 209, 250, 292, 324
MalI GATC 4 cut(s) 21, 133, 168, 201
MboI GATC 4 cut(s) 19, 131, 166, 199
MboII GAAGA 2 cut(s) 153, 452
MhlI GDGCHC 4 cut(s) 34, 92, 311, 474
MluCI AATT 5 cut(s) 97, 172, 236, 385, 507
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 3 cut(s) 190, 237, 499
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 1 cut(s) 506
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 2 cut(s) 42, 329
MspR9I CCNGG 1 cut(s) 42
NciI CCSGG 1 cut(s) 42
NdeI CATATG 1 cut(s) 355
NdeII GATC 4 cut(s) 19, 131, 166, 199
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 3 cut(s) 209, 292, 324
NsiI ATGCAT 1 cut(s) 415
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 274
PmaCI CACGTG 1 cut(s) 137
PmlI CACGTG 1 cut(s) 137
Ppu21I YACGTR 2 cut(s) 137, 457
PspCI CACGTG 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 229
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 3 cut(s) 281, 455, 459
RsaNI GTAC 3 cut(s) 280, 454, 458
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 4 cut(s) 19, 131, 166, 199
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 4 cut(s) 34, 92, 311, 474
SetI ASST 6 cut(s) 78, 139, 277, 301, 371, 459
SfaNI GCATC 2 cut(s) 46, 422
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 480
SnaBI TACGTA 1 cut(s) 457
Sse9I AATT 5 cut(s) 97, 172, 236, 385, 507
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 322, 462
TaiI ACGT 3 cut(s) 78, 139, 459
TasI AATT 5 cut(s) 97, 172, 236, 385, 507
TatI WGTACW 1 cut(s) 279
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TscAI CASTG 3 cut(s) 297, 327, 505
TseFI GTSAC 3 cut(s) 209, 292, 324
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 3 cut(s) 209, 292, 324
TspDTI ATGAA 1 cut(s) 175
TspRI CASTG 3 cut(s) 297, 327, 505
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 2 cut(s) 97, 236
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.