Rw3G006170

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006178
Physical Location & Seq
Reverse (-)
5839564 .. 5841679
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G006170.1

Sequence Viewer

Length: 390 bp
ATGGGCCTACTTGACCAGCTTTGGGACGACACCGTCGCTGGGCCTCGGCCAGACATCGGCCTCGGCAAGCTTCGGAAGACCCAATCTCTCGGCTTACGATCCAACTCCGGCAAGGGAGTTGATGGCGGGAGCGCGAGATCGTACGGTGAGGGCTCAACGGAAGAGGCGGCAAAAGTTACACGGAGTATTATGATTGTGAAACCCCCAGGATATGGGAGCGCCGGCAGCGATTCCACTCCGGCGTCACCAGCTGGATCTACTCCACCGGTGTCTCCCTTTTCTGGAGGCAGGGAGTCATTTCGATTTCGAAGAAGATCCACGTCGGATGCGTACGAGAAGGCAACCGAGGTCATTGGAGCAAAGAGCACCCCATCTTCTTACGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

129

Amino Acids

13.38

Weight (kDa)

9.34

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 89 1.5e-09 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 212
AccII CGCG 1 cut(s) 134
AciI CCGC 2 cut(s) 126, 167
AclWI GGATC 3 cut(s) 93, 262, 309
AcoI YGGCCR 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 2 cut(s) 143, 332
AfiI CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
AgeI ACCGGT 1 cut(s) 265
AjiI CACGTC 1 cut(s) 321
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 19, 70, 251
AluI AGCT 3 cut(s) 19, 70, 251
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 3 cut(s) 93, 262, 309
AoxI GGCC 4 cut(s) 4, 41, 47, 58
ApeKI GCWGC 1 cut(s) 225
AsiGI ACCGGT 1 cut(s) 265
AspLEI GCGC 2 cut(s) 134, 221
AspS9I GGNCC 2 cut(s) 4, 41
AsuHPI GGTGA 2 cut(s) 158, 237
AsuII TTCGAA 1 cut(s) 307
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 237
BccI CCATC 2 cut(s) 116, 379
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 2 cut(s) 168, 226
BlsI GCNGC 2 cut(s) 169, 227
Bme1390I CCNGG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 4, 41
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 303
Bpu14I TTCGAA 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 44, 61, 205, 345
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
Bse118I RCCGGY 2 cut(s) 221, 265
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 4 cut(s) 44, 61, 205, 345
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 4 cut(s) 6, 43, 49, 60
BshTI ACCGGT 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 368
BsiSI CCGG 4 cut(s) 108, 222, 239, 266
BsiWI CGTACG 2 cut(s) 141, 330
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 5 cut(s) 22, 39, 56, 212, 281
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 4 cut(s) 6, 43, 49, 60
Bsp119I TTCGAA 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 155, 368
Bsp143I GATC 4 cut(s) 98, 137, 254, 314
BspACI CCGC 2 cut(s) 126, 167
BspANI GGCC 4 cut(s) 6, 43, 49, 60
BspFNI CGCG 1 cut(s) 134
BspPI GGATC 3 cut(s) 93, 262, 309
BspT104I TTCGAA 1 cut(s) 307
BsrFI RCCGGY 2 cut(s) 221, 265
BssAI RCCGGY 2 cut(s) 221, 265
BssECI CCNNGG 4 cut(s) 44, 61, 205, 345
BssMI GATC 4 cut(s) 98, 137, 254, 314
BssNI GRCGYC 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 34, 146
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 68, 223
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 134, 221
BstKTI GATC 4 cut(s) 101, 140, 257, 317
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 4 cut(s) 98, 137, 254, 314
BstMWI GCNNNNNNNGC 2 cut(s) 225, 248
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 254, 314
BstYI RGATCY 2 cut(s) 254, 314
BsuRI GGCC 4 cut(s) 6, 43, 49, 60
BtrI CACGTC 1 cut(s) 321
BtsCI GGATG 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 68, 223
CfoI GCGC 2 cut(s) 134, 221
Cfr10I RCCGGY 2 cut(s) 221, 265
Cfr13I GGNCC 2 cut(s) 4, 41
CseI GACGC 1 cut(s) 231
Csp6I GTAC 2 cut(s) 142, 331
CspAI ACCGGT 1 cut(s) 265
CviJI RGCY 9 cut(s) 6, 19, 43, 49, 60, 70, 93, 153, 251
CviKI_1 RGCY 9 cut(s) 6, 19, 43, 49, 60, 70, 93, 153, 251
CviQI GTAC 2 cut(s) 142, 331
DpnI GATC 4 cut(s) 100, 139, 256, 316
DpnII GATC 4 cut(s) 98, 137, 254, 314
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 155
FaiI YATR 2 cut(s) 191, 213
FaqI GGGAC 1 cut(s) 38
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 2 cut(s) 168, 226
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 168, 226
GlaI GCGC 2 cut(s) 133, 220
GluI GCNGC 2 cut(s) 168, 226
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 4 cut(s) 6, 43, 49, 60
HapII CCGG 4 cut(s) 108, 222, 239, 266
HgaI GACGC 1 cut(s) 231
HhaI GCGC 2 cut(s) 134, 221
Hin1I GRCGYC 1 cut(s) 242
Hin6I GCGC 2 cut(s) 132, 219
HinP1I GCGC 2 cut(s) 132, 219
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 230, 293
HpaII CCGG 4 cut(s) 108, 222, 239, 266
HphI GGTGA 2 cut(s) 158, 237
Hpy188I TCNGA 2 cut(s) 75, 325
Hpy188III TCNNGA 1 cut(s) 282
Hpy99I CGWCG 2 cut(s) 38, 325
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 2 cut(s) 34, 146
HpyCH4IV ACGT 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 248
HpySE526I ACGT 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 242
HspAI GCGC 2 cut(s) 132, 219
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Kzo9I GATC 4 cut(s) 98, 137, 254, 314
LmnI GCTCC 3 cut(s) 129, 216, 356
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 316
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 2 cut(s) 175, 243
MalI GATC 4 cut(s) 100, 139, 256, 316
MboI GATC 4 cut(s) 98, 137, 254, 314
MboII GAAGA 5 cut(s) 88, 173, 321, 324, 366
MflI RGATCY 2 cut(s) 254, 314
MhlI GDGCHC 2 cut(s) 155, 368
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 2 cut(s) 126, 303
MnlI CCTC 6 cut(s) 54, 71, 142, 157, 278, 340
MroNI GCCGGC 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 4 cut(s) 108, 222, 239, 266
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 225, 248
NaeI GCCGGC 1 cut(s) 223
NdeII GATC 4 cut(s) 98, 137, 254, 314
NgoMIV GCCGGC 1 cut(s) 221
NmeAIII GCCGAG 3 cut(s) 25, 42, 69
NmuCI GTSAC 1 cut(s) 243
NspV TTCGAA 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 230
Pfl23II CGTACG 2 cut(s) 141, 330
PflFI GACNNNGTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 212
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 2 cut(s) 169, 227
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 205
PspLI CGTACG 2 cut(s) 141, 330
PspPI GGNCC 2 cut(s) 4, 41
PsuI RGATCY 2 cut(s) 254, 314
PsyI GACNNNGTC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 143, 332
RsaNI GTAC 2 cut(s) 142, 331
SatI GCNGC 2 cut(s) 168, 226
Sau3AI GATC 4 cut(s) 98, 137, 254, 314
Sau96I GGNCC 2 cut(s) 4, 41
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 155, 368
SetI ASST 5 cut(s) 21, 72, 253, 323, 351
SfaNI GCATC 1 cut(s) 316
SfuI TTCGAA 1 cut(s) 307
SgrAI CRCCGGYG 1 cut(s) 265
SsiI CCGC 2 cut(s) 126, 167
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 34, 146
TaiI ACGT 1 cut(s) 323
TaqI TCGA 2 cut(s) 301, 307
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 1 cut(s) 230
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 243
TspGWI ACGGA 2 cut(s) 173, 196
Tth111I GACNNNGTC 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.