Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006178

Physical Location & Seq

Genomic Coordinates Reverse (-)

28325214 .. 28326929

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G319600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGCTTACTTGACCAGCTCTGGGACGACACCGTCGCCGGGCCCCGGCCCGATATCGGTCTTGGCAAGCTCCGCAAGCACAAAACCTTCAGTTTCCGATCCAGCTCCGCCAAGGGATCGTCGGATGGAGGGAGCGTGGGATCGTACGGTGAGGATTCGACAGAGGAGGCGACGAGAGTTACACGGAGTATTATGATAGTGAAACCCCCAGGATATGGGAGCGGTAACAGCGGATCGCCTCCGATTTCGCCAGCTGGGTCTACGCCTCCAGTGTCTCCGTTTTCTGGAGGCAGCAGCATGGGAAGATTCAGGAGGAGGTCGGCATCGGATGCATACGAGAAGGCAAGCCAGGTTGGTGGTGGAGGAGCAAGGAGCAGCCCCCGGTCTCCTTTCGACGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

134

Amino Acids

13.68

Weight (kDa)

9.89

Isoelectric Point (pI)

77.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56220 AT1G56220 AT1G56220 AT1G56220 AT1G56220
fragaria_vesca	FvH4_6g06830
malus_domestica	MD04G1198800.v1.1 MD12G1212000.v1.1
prunus_persica	Prupe.6G319600_v2.0.a1 Prupe.6G319600_v2.0.a1
pyrus_communis	pycom04g17570 pycom12g19830
rosa_chinensis	RchiOBHm_Chr3g0456211
rosa_laevigata	RLG00000025315
rosa_multiflora	Rmu_sc0000279.1_g000062 Rmu_sc0002607.1_g000041
rosa_roxburghii	Rroxscaffold_6G00422920 Rroxscaffold_6G00423710
rosa_rugosa	Rorug03G0012200 Rorug03G0012300 Rorug03G0012400
rosa_samantha	Rh3AG072400 Rh3BG074400 Rh3CG073900 Rh3DG075700
rosa_wichuraiana	Rw3G005870 Rw3G006170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	260
AciI	CCGC	4 cut(s)	73, 108, 222, 231
AclWI	GGATC	4 cut(s)	93, 124, 148, 241
AcuI	CTGAAG	1 cut(s)	73
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	6 cut(s)	22, 39, 45, 56, 215, 284
AflIII	ACRYGT	1 cut(s)	396
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	2 cut(s)	208, 348
AluBI	AGCT	4 cut(s)	19, 70, 105, 254
AluI	AGCT	4 cut(s)	19, 70, 105, 254
Alw26I	GTCTC	2 cut(s)	279, 390
AlwI	GGATC	4 cut(s)	93, 124, 148, 241
AoxI	GGCC	2 cut(s)	41, 47
ApaI	GGGCCC	1 cut(s)	45
ApeKI	GCWGC	3 cut(s)	291, 294, 375
AspS9I	GGNCC	3 cut(s)	41, 42, 48
AsuC2I	CCSGG	3 cut(s)	40, 46, 382
AsuHPI	GGTGA	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	303, 306, 387
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	2 cut(s)	210, 350
BcnI	CCSGG	3 cut(s)	40, 46, 382
BcoDI	GTCTC	2 cut(s)	279, 390
BisI	GCNGC	3 cut(s)	292, 295, 376
BlsI	GCNGC	3 cut(s)	293, 296, 377
Bme1390I	CCNGG	5 cut(s)	40, 46, 210, 350, 382
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	41, 42, 48
BmiI	GGNNCC	2 cut(s)	43, 44
BmrFI	CCNGG	5 cut(s)	40, 46, 210, 350, 382
BmsI	GCATC	2 cut(s)	319, 332
BpmI	CTGGAG	2 cut(s)	252, 306
BpuMI	CCSGG	3 cut(s)	40, 46, 382
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	4 cut(s)	44, 111, 208, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 39, 45, 56, 215, 284
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	210, 350
BseDI	CCNNGG	4 cut(s)	44, 111, 208, 380
BseGI	GGATG	2 cut(s)	130, 334
BseLI	CCNNNNNNNGG	6 cut(s)	22, 39, 45, 56, 215, 284
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	3 cut(s)	179, 328, 378
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	303, 306, 387
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	2 cut(s)	43, 49
BsiSI	CCGG	3 cut(s)	39, 46, 382
BsiWI	CGTACG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	6 cut(s)	22, 39, 45, 56, 215, 284
BsmAI	GTCTC	2 cut(s)	279, 390
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	43, 49
Bso31I	GGTCTC	1 cut(s)	390
Bsp120I	GGGCCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	98, 116, 140, 233
BspACI	CCGC	4 cut(s)	73, 108, 222, 231
BspANI	GGCC	2 cut(s)	43, 49
BspLI	GGNNCC	2 cut(s)	43, 44
BspPI	GGATC	4 cut(s)	93, 124, 148, 241
BspTNI	GGTCTC	1 cut(s)	390
BsrBI	CCGCTC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	44, 111, 208, 380
BssMI	GATC	4 cut(s)	98, 116, 140, 233
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	210, 350
Bst4CI	ACNGT	2 cut(s)	34, 149
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	4 cut(s)	68, 77, 252, 346
BstF5I	GGATG	2 cut(s)	130, 334
BstKTI	GATC	4 cut(s)	101, 119, 143, 236
BstMAI	GTCTC	2 cut(s)	279, 390
BstMBI	GATC	4 cut(s)	98, 116, 140, 233
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 76, 228, 329
BstNI	CCWGG	2 cut(s)	210, 350
BstSCI	CCNGG	5 cut(s)	38, 44, 208, 348, 380
BstSLI	GKGCMC	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	303, 306, 387
BstXI	CCANNNNNNTGG	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	43, 49
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	2 cut(s)	130, 334
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	4 cut(s)	68, 77, 252, 346
Cfr13I	GGNCC	3 cut(s)	41, 42, 48
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	9 cut(s)	6, 19, 43, 49, 70, 105, 254, 348, 378
CviKI_1	RGCY	9 cut(s)	6, 19, 43, 49, 70, 105, 254, 348, 378
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	4 cut(s)	100, 118, 142, 235
DpnII	GATC	4 cut(s)	98, 116, 140, 233
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	208, 348
EcoRV	GATATC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	301
FaiI	YATR	4 cut(s)	194, 216, 299, 334
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	292, 295, 376
FokI	GGATG	2 cut(s)	137, 341
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	292, 295, 376
GluI	GCNGC	3 cut(s)	292, 295, 376
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	2 cut(s)	252, 306
HaeIII	GGCC	2 cut(s)	43, 49
HapII	CCGG	3 cut(s)	39, 46, 382
Hin1II	CATG	1 cut(s)	301
HinfI	GANTC	2 cut(s)	155, 306
HpaII	CCGG	3 cut(s)	39, 46, 382
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	4 cut(s)	98, 124, 243, 328
Hpy188III	TCNNGA	2 cut(s)	285, 310
Hpy8I	GTNNAC	1 cut(s)	261
Hpy99I	CGWCG	4 cut(s)	38, 124, 175, 398
HpyAV	CCTTC	2 cut(s)	97, 334
HpyCH4III	ACNGT	2 cut(s)	34, 149
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 76, 228, 329
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	98, 116, 140, 233
LmnI	GCTCC	6 cut(s)	75, 110, 132, 219, 365, 372
Lsp1109I	GCAGC	3 cut(s)	303, 306, 387
LweI	GCATC	2 cut(s)	319, 332
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	178, 224
MalI	GATC	4 cut(s)	100, 118, 142, 235
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	4 cut(s)	98, 116, 140, 233
MboII	GAAGA	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	334
MspA1I	CMGCKG	2 cut(s)	231, 254
MspI	CCGG	3 cut(s)	39, 46, 382
MspR9I	CCNGG	5 cut(s)	40, 46, 210, 350, 382
MvaI	CCWGG	2 cut(s)	210, 350
MwoI	GCNNNNNNNGC	4 cut(s)	72, 76, 228, 329
NciI	CCSGG	3 cut(s)	40, 46, 382
NdeII	GATC	4 cut(s)	98, 116, 140, 233
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	2 cut(s)	43, 44
NsiI	ATGCAT	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	155, 306
Pfl23II	CGTACG	1 cut(s)	144
PflFI	GACNNNGTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	293, 296, 377
Psp6I	CCWGG	2 cut(s)	208, 348
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	208, 348
PspLI	CGTACG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	43, 44
PspOMI	GGGCCC	1 cut(s)	41
PspPI	GGNCC	3 cut(s)	41, 42, 48
PsyI	GACNNNGTC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	3 cut(s)	292, 295, 376
Sau3AI	GATC	4 cut(s)	98, 116, 140, 233
Sau96I	GGNCC	3 cut(s)	41, 42, 48
ScrFI	CCNGG	5 cut(s)	40, 46, 210, 350, 382
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	21, 72, 89, 107, 256, 320, 354, 399
SfaNI	GCATC	2 cut(s)	319, 332
SsiI	CCGC	4 cut(s)	73, 108, 222, 231
StyD4I	CCNGG	5 cut(s)	38, 44, 208, 348, 380
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	34, 149
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	158, 393
TaqII	GACCGA	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	155, 306
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	3 cut(s)	291, 294, 375
TspGWI	ACGGA	2 cut(s)	199, 267
TspRI	CASTG	1 cut(s)	276
Tth111I	GACNNNGTC	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.