FvH4_6g06830

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006178
Physical Location & Seq
Forward (+)
4121161 .. 4122768
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06830.t1

Sequence Viewer

Length: 381 bp
ATGGGCCTACTTGATCAGCTCTGGGACGACACCGTTGCCGGGCCTCGGCCAGATATCGGCCTCGGCAAGCTTCGGAAGAACCAACCTTTGCGATCCAACTCCGGCAAGGGAGTTGATGGCGGGAGCGCGAGATCGTACGTTGAGGGATCAACGGAGGAGACGACGAGGGTTACACGGAGTATTATGATAGTGAAACCCCCAGGTTATGGGAGCGGCGGCAGCGATTCCACTCCGGCGTCGCCAGCTGGATCTACTCCACCGGTGTCTCCCTTTTCTGGCAGGGAGTCGTTCCGTTTTCGAAGAAGGTCGGCGTCCGATGCTTACGACAAGTCACGCGAGGTCGCTGGAGCAAAGAGCCCCCCTTCTTCTTACGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

127

Amino Acids

13.28

Weight (kDa)

9.62

Isoelectric Point (pI)

67.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 84 1.3e-08 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 2 cut(s) 128, 336
AciI CCGC 3 cut(s) 120, 213, 216
AclWI GGATC 3 cut(s) 87, 154, 256
AcoI YGGCCR 1 cut(s) 47
AcyI GRCGYC 2 cut(s) 236, 311
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 5 cut(s) 39, 45, 56, 206, 275
AgeI ACCGGT 1 cut(s) 259
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 3 cut(s) 19, 70, 245
AluI AGCT 3 cut(s) 19, 70, 245
Alw26I GTCTC 2 cut(s) 152, 270
AlwI GGATC 3 cut(s) 87, 154, 256
AoxI GGCC 4 cut(s) 4, 41, 47, 58
ApeKI GCWGC 1 cut(s) 219
AsiGI ACCGGT 1 cut(s) 259
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 4, 41
AsuC2I CCSGG 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 298
BanII GRGCYC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 110
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 152, 270
BisI GCNGC 3 cut(s) 214, 217, 220
BlsI GCNGC 3 cut(s) 215, 218, 221
Bme1390I CCNGG 2 cut(s) 40, 201
BmgT120I GGNCC 2 cut(s) 4, 41
BmrFI CCNGG 2 cut(s) 40, 201
BmsI GCATC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 40
BsaHI GRCGYC 2 cut(s) 236, 311
BsaJI CCNNGG 3 cut(s) 44, 61, 199
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 45, 56, 206, 275
Bse118I RCCGGY 1 cut(s) 259
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 3 cut(s) 44, 61, 199
BseLI CCNNNNNNNGG 5 cut(s) 39, 45, 56, 206, 275
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 231
Bsh1236I CGCG 2 cut(s) 128, 336
BshFI GGCC 4 cut(s) 6, 43, 49, 60
BshTI ACCGGT 1 cut(s) 259
BsiSI CCGG 4 cut(s) 39, 102, 233, 260
BsiWI CGTACG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 5 cut(s) 39, 45, 56, 206, 275
BsmAI GTCTC 2 cut(s) 152, 270
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 4 cut(s) 6, 43, 49, 60
Bsp119I TTCGAA 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 5 cut(s) 13, 92, 131, 146, 248
BspACI CCGC 3 cut(s) 120, 213, 216
BspANI GGCC 4 cut(s) 6, 43, 49, 60
BspFNI CGCG 2 cut(s) 128, 336
BspPI GGATC 3 cut(s) 87, 154, 256
BspT104I TTCGAA 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 3 cut(s) 44, 61, 199
BssMI GATC 5 cut(s) 13, 92, 131, 146, 248
BssNI GRCGYC 2 cut(s) 236, 311
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 34
BstACI GRCGYC 2 cut(s) 236, 311
BstBI TTCGAA 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 68, 243
BstFNI CGCG 2 cut(s) 128, 336
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 5 cut(s) 16, 95, 134, 149, 251
BstMAI GTCTC 2 cut(s) 152, 270
BstMBI GATC 5 cut(s) 13, 92, 131, 146, 248
BstMWI GCNNNNNNNGC 3 cut(s) 219, 242, 317
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 2 cut(s) 38, 199
BstUI CGCG 2 cut(s) 128, 336
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 4 cut(s) 6, 43, 49, 60
Cac8I GCNNGC 2 cut(s) 68, 243
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 4, 41
CseI GACGC 2 cut(s) 225, 300
Csp6I GTAC 1 cut(s) 136
CspAI ACCGGT 1 cut(s) 259
CviJI RGCY 8 cut(s) 6, 19, 43, 49, 60, 70, 245, 357
CviKI_1 RGCY 8 cut(s) 6, 19, 43, 49, 60, 70, 245, 357
CviQI GTAC 1 cut(s) 136
DpnI GATC 5 cut(s) 15, 94, 133, 148, 250
DpnII GATC 5 cut(s) 13, 92, 131, 146, 248
EaeI YGGCCR 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 359
Eco32I GATATC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 199
EcoRV GATATC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 359
Esp3I CGTCTC 1 cut(s) 152
FaiI YATR 2 cut(s) 185, 207
FaqI GGGAC 1 cut(s) 38
FauI CCCGC 1 cut(s) 113
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 214, 217, 220
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 3 cut(s) 214, 217, 220
GlaI GCGC 1 cut(s) 127
GluI GCNGC 3 cut(s) 214, 217, 220
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 4 cut(s) 6, 43, 49, 60
HapII CCGG 4 cut(s) 39, 102, 233, 260
HgaI GACGC 2 cut(s) 225, 300
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 2 cut(s) 236, 311
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 224, 284
HpaII CCGG 4 cut(s) 39, 102, 233, 260
Hpy188I TCNGA 2 cut(s) 75, 316
Hpy99I CGWCG 2 cut(s) 166, 241
HpyAV CCTTC 2 cut(s) 297, 372
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 242, 317
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 2 cut(s) 236, 311
HspAI GCGC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 5 cut(s) 13, 92, 131, 146, 248
LmnI GCTCC 3 cut(s) 123, 210, 347
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 307
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 169, 330
MalI GATC 5 cut(s) 15, 94, 133, 148, 250
MbiI CCGCTC 1 cut(s) 213
MboI GATC 5 cut(s) 13, 92, 131, 146, 248
MboII GAAGA 3 cut(s) 88, 312, 357
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 359
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 6 cut(s) 54, 71, 136, 148, 159, 331
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 4 cut(s) 39, 102, 233, 260
MspR9I CCNGG 2 cut(s) 40, 201
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 2 cut(s) 128, 336
MwoI GCNNNNNNNGC 3 cut(s) 219, 242, 317
NciI CCSGG 1 cut(s) 40
NdeII GATC 5 cut(s) 13, 92, 131, 146, 248
NmeAIII GCCGAG 2 cut(s) 25, 42
NmuCI GTSAC 1 cut(s) 330
NspV TTCGAA 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PfeI GAWTC 1 cut(s) 224
Pfl23II CGTACG 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 206
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 3 cut(s) 215, 218, 221
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspLI CGTACG 1 cut(s) 135
PspPI GGNCC 2 cut(s) 4, 41
PsuI RGATCY 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SatI GCNGC 3 cut(s) 214, 217, 220
Sau3AI GATC 5 cut(s) 13, 92, 131, 146, 248
Sau96I GGNCC 2 cut(s) 4, 41
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 40, 201
SduI GDGCHC 1 cut(s) 359
SetI ASST 8 cut(s) 21, 72, 88, 141, 205, 247, 308, 342
SfaNI GCATC 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 298
SgrAI CRCCGGYG 1 cut(s) 259
SsiI CCGC 3 cut(s) 120, 213, 216
StyD4I CCNGG 2 cut(s) 38, 199
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 298
TauI GCSGC 2 cut(s) 216, 219
TfiI GAWTC 1 cut(s) 224
TseFI GTSAC 1 cut(s) 330
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 330
TspGWI ACGGA 3 cut(s) 167, 190, 281
Van91I CCANNNNNTGG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.