AT1G56670

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005861
Physical Location & Seq
Forward (+)
21241579 .. 21244207
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56670.1

Sequence Viewer

Length: 1122 bp
ATGGCTACTCTCTTTCTCTACTCTAACACATTTTCCTTCTTCTTTATTACACTCGTGTCGTTAGCTCTTCTAATTCTCCGGCAACCCTCTAGGGCGGCGAGTTGTACAGCTCGGCCGGTGATTTTTAACTTTGGAGATTCTAATTCAGATACAGGAGGACTTGTTGCTGGACTTGGTTACCCCATTGGCTTCCCAAATGGACGCTTATTTTTCCGGCGATCTACCGGTCGTTTGTCCGACGGACGTCTTCTCATCGATTTCCTATGTCAGAGTTTGAATACAAGTCTTTTGAGGCCATACTTAGATTCATTGGGTAGAACAAGGTTTCAAAATGGTGCAAATTTTGCAATTGCTGGATCCCCAACTCTTCCCAAAAACGTCCCTTTCTCGCTTAACATTCAGGTCAAGCAGTTCAGCCATTTCAAATCCCGATCACTCGAGCTCGCTTCTAGTTCAAATTCATTAAAGGGCATGTTCATAAGCAACAATGGATTCAAAAACGCGTTGTACATGATCGATATTGGACAGAACGACATTGCGCGTTCATTCGCTAGAGGCAACTCGTATTCTCAGACGGTTAAGTTGATTCCACAAATTATTACGGAAATAAAAAGCAGCATAAAGAGATTGTATGATGAAGGAGGAAGGAGATTCTGGATTCACAACACTGGTCCATTGGGTTGTCTACCTCAAAAACTTTCTATGGTTAAGAGCAAAGATCTCGACCAGCACGGTTGCTTAGTCAGTTACAACTCGGCAGCAACTCTGTTTAACCAAGGATTGGATCATATGTGTGAGGAGCTGAGGACCGAACTACGAGATGCCACCATAATCTATATTGACATATACGCTATCAAATACAGTCTTATTGCAAACTCCAACCAATACGGTTTTAAGAGTCCGTTGATGGCGTGTTGTGGATACGGAGGGACTCCATACAACTACAATGTGAAGATAACATGTGGGCACAAAGGCTCTAATGTATGTGAGGAAGGGTCGCGTTTCATAAGCTGGGATGGGATTCATTACACCGAGACAGCTAATGCCATTGTAGCCATGAAAGTTCTTTCAATGCATTACTCTAAGCCACCAACTCCGTTCCATTTCTTCTGCCGTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

373

Amino Acids

41.58

Weight (kDa)

9.47

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 41 - 355 2.5e-55 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 247
AccB7I CCANNNNNTGG 1 cut(s) 781
AccI GTMKAC 1 cut(s) 685
AccII CGCG 3 cut(s) 503, 541, 1000
AciI CCGC 1 cut(s) 95
AclWI GGATC 3 cut(s) 351, 364, 792
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 2 cut(s) 340, 457
AcyI GRCGYC 1 cut(s) 244
AfaI GTAC 2 cut(s) 106, 509
AfiI CCNNNNNNNGG 1 cut(s) 781
AflIII ACRYGT 2 cut(s) 501, 959
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 6 cut(s) 277, 329, 424, 456, 496, 1071
AluBI AGCT 6 cut(s) 65, 110, 442, 802, 1011, 1040
AluI AGCT 6 cut(s) 65, 110, 442, 802, 1011, 1040
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 1 cut(s) 1028
AlwI GGATC 3 cut(s) 351, 364, 792
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 2 cut(s) 113, 293
ApeKI GCWGC 2 cut(s) 615, 758
ApoI RAATTY 2 cut(s) 340, 457
AsiGI ACCGGT 1 cut(s) 224
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 2 cut(s) 671, 807
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 2 cut(s) 671, 807
BaeGI GKGCMC 1 cut(s) 969
BamHI GGATCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 444
BauI CACGAG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 444
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 2 cut(s) 627, 770
BccI CCATC 2 cut(s) 901, 1010
BceAI ACGGC 1 cut(s) 1098
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BciVI GTATCC 1 cut(s) 914
BcoDI GTCTC 1 cut(s) 1028
BfaI CTAG 3 cut(s) 90, 450, 552
BfuI GTATCC 1 cut(s) 914
BglII AGATCT 1 cut(s) 718
BisI GCNGC 3 cut(s) 96, 616, 759
BlsI GCNGC 3 cut(s) 97, 617, 760
Bme18I GGWCC 2 cut(s) 671, 807
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 671, 807
BmiI GGNNCC 1 cut(s) 358
BmsI GCATC 1 cut(s) 811
BoxI GACNNNNGTC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 803
Bsa29I ATCGAT 2 cut(s) 255, 516
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 775
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 781
Bse118I RCCGGY 2 cut(s) 115, 224
Bse1I ACTGG 1 cut(s) 673
Bse3DI GCAATG 1 cut(s) 534
BseCI ATCGAT 2 cut(s) 255, 516
BseDI CCNNGG 1 cut(s) 775
BseGI GGATG 1 cut(s) 1021
BseLI CCNNNNNNNGG 1 cut(s) 781
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 2 cut(s) 584, 794
BseNI ACTGG 1 cut(s) 673
BseRI GAGGAG 1 cut(s) 812
BseSI GKGCMC 1 cut(s) 969
BseX3I CGGCCG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 627, 770
BseYI CCCAGC 1 cut(s) 1011
Bsh1236I CGCG 3 cut(s) 503, 541, 1000
Bsh1285I CGRYCG 2 cut(s) 116, 229
BshFI GGCC 2 cut(s) 115, 295
BshTI ACCGGT 1 cut(s) 224
BshVI ATCGAT 2 cut(s) 255, 516
BsiEI CGRYCG 2 cut(s) 116, 229
BsiHKAI GWGCWC 1 cut(s) 444
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 4 cut(s) 79, 116, 214, 225
BslFI GGGAC 2 cut(s) 365, 943
BslI CCNNNNNNNGG 1 cut(s) 781
BsmAI GTCTC 1 cut(s) 1028
BsmFI GGGAC 2 cut(s) 365, 943
BsnI GGCC 2 cut(s) 115, 295
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 444, 969
Bsp1407I TGTACA 2 cut(s) 104, 507
Bsp143I GATC 6 cut(s) 218, 356, 431, 513, 718, 784
BspACI CCGC 1 cut(s) 95
BspANI GGCC 2 cut(s) 115, 295
BspCNI CTCAG 2 cut(s) 583, 795
BspDI ATCGAT 2 cut(s) 255, 516
BspFNI CGCG 3 cut(s) 503, 541, 1000
BspLI GGNNCC 1 cut(s) 358
BspPI GGATC 3 cut(s) 351, 364, 792
BspQI GCTCTTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 2 cut(s) 115, 224
BsrGI TGTACA 2 cut(s) 104, 507
BsrI ACTGG 1 cut(s) 673
BssAI RCCGGY 2 cut(s) 115, 224
BssECI CCNNGG 1 cut(s) 775
BssMI GATC 6 cut(s) 218, 356, 431, 513, 718, 784
BssNI GRCGYC 1 cut(s) 244
BssSI CACGAG 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 775
Bst2BI CACGAG 1 cut(s) 53
Bst4CI ACNGT 4 cut(s) 577, 734, 863, 890
Bst6I CTCTTC 2 cut(s) 72, 372
BstACI GRCGYC 1 cut(s) 244
BstAPI GCANNNNNTGC 1 cut(s) 344
BstAUI TGTACA 2 cut(s) 104, 507
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 5 cut(s) 301, 570, 739, 803, 1083
BstEII GGTNACC 1 cut(s) 176
BstF5I GGATG 1 cut(s) 1021
BstFNI CGCG 3 cut(s) 503, 541, 1000
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 6 cut(s) 221, 359, 434, 516, 721, 787
BstMAI GTCTC 1 cut(s) 1028
BstMBI GATC 6 cut(s) 218, 356, 431, 513, 718, 784
BstMCI CGRYCG 2 cut(s) 116, 229
BstMWI GCNNNNNNNGC 2 cut(s) 344, 1052
BstNSI RCATGY 2 cut(s) 475, 963
BstPAI GACNNNNGTC 1 cut(s) 243
BstPI GGTNACC 1 cut(s) 176
BstSLI GKGCMC 1 cut(s) 969
BstUI CGCG 3 cut(s) 503, 541, 1000
BstV1I GCAGC 2 cut(s) 627, 770
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 356, 718
BstYI RGATCY 2 cut(s) 356, 718
BstZI CGGCCG 1 cut(s) 113
Bsu15I ATCGAT 2 cut(s) 255, 516
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 2 cut(s) 115, 295
BsuTUI ATCGAT 2 cut(s) 255, 516
BtsCI GGATG 1 cut(s) 1021
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 1 cut(s) 444
CfoI GCGC 1 cut(s) 541
Cfr10I RCCGGY 2 cut(s) 115, 224
Cfr13I GGNCC 2 cut(s) 671, 807
ClaI ATCGAT 2 cut(s) 255, 516
CseI GACGC 1 cut(s) 210
Csp6I GTAC 2 cut(s) 105, 508
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 4 cut(s) 472, 511, 960, 1057
CviQI GTAC 2 cut(s) 105, 508
DdeI CTNAG 5 cut(s) 301, 570, 739, 803, 1083
DpnI GATC 6 cut(s) 220, 358, 433, 515, 720, 786
DpnII GATC 6 cut(s) 218, 356, 431, 513, 718, 784
EaeI YGGCCR 1 cut(s) 113
EagI CGGCCG 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 72, 372
EarI CTCTTC 2 cut(s) 72, 372
Ecl136II GAGCTC 1 cut(s) 442
EclXI CGGCCG 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 775
Eco24I GRGCYC 1 cut(s) 444
Eco47I GGWCC 2 cut(s) 671, 807
Eco52I CGGCCG 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 442
Eco88I CYCGRG 1 cut(s) 437
Eco91I GGTNACC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 442
EcoO65I GGTNACC 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 775
EcoT22I ATGCAT 1 cut(s) 1077
EcoT38I GRGCYC 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 775
FaeI CATG 4 cut(s) 475, 514, 963, 1060
FaqI GGGAC 2 cut(s) 365, 943
FatI CATG 4 cut(s) 471, 510, 959, 1056
FauNDI CATATG 1 cut(s) 789
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 96, 616, 759
FokI GGATG 1 cut(s) 1028
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 3 cut(s) 96, 616, 759
FspBI CTAG 3 cut(s) 90, 450, 552
GlaI GCGC 1 cut(s) 540
GluI GCNGC 3 cut(s) 96, 616, 759
GsaI CCCAGC 1 cut(s) 1015
HaeIII GGCC 2 cut(s) 115, 295
HapII CCGG 4 cut(s) 79, 116, 214, 225
HgaI GACGC 1 cut(s) 210
HhaI GCGC 1 cut(s) 541
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 4 cut(s) 475, 514, 963, 1060
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HinfI GANTC 9 cut(s) 137, 305, 492, 586, 651, 658, 898, 931, 1021
HpaII CCGG 4 cut(s) 79, 116, 214, 225
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 686
Hpy188I TCNGA 4 cut(s) 148, 238, 270, 573
Hpy188III TCNNGA 3 cut(s) 429, 655, 722
Hpy8I GTNNAC 1 cut(s) 686
Hpy99I CGWCG 2 cut(s) 242, 1119
HpyAV CCTTC 4 cut(s) 46, 632, 639, 986
HpyCH4III ACNGT 4 cut(s) 577, 734, 863, 890
HpyCH4IV ACGT 2 cut(s) 244, 378
HpyCH4V TGCA 4 cut(s) 338, 347, 872, 1075
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 1052
HpyF3I CTNAG 5 cut(s) 301, 570, 739, 803, 1083
HpySE526I ACGT 2 cut(s) 244, 378
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 4 cut(s) 475, 514, 963, 1060
HspAI GCGC 1 cut(s) 539
Kzo9I GATC 6 cut(s) 218, 356, 431, 513, 718, 784
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 799
Lsp1109I GCAGC 2 cut(s) 627, 770
LweI GCATC 1 cut(s) 811
MaeI CTAG 3 cut(s) 90, 450, 552
MaeII ACGT 2 cut(s) 244, 378
MaeIII GTNAC 2 cut(s) 176, 746
MalI GATC 6 cut(s) 220, 358, 433, 515, 720, 786
MboI GATC 6 cut(s) 218, 356, 431, 513, 718, 784
MboII GAAGA 6 cut(s) 31, 59, 239, 359, 964, 1099
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 2 cut(s) 356, 718
MhlI GDGCHC 2 cut(s) 444, 969
MluCI AATT 6 cut(s) 72, 142, 340, 348, 457, 594
MluI ACGCGT 1 cut(s) 501
MlyI GAGTC 2 cut(s) 907, 925
MmeI TCCRAC 2 cut(s) 261, 903
Mph1103I ATGCAT 1 cut(s) 1077
MseI TTAA 7 cut(s) 126, 393, 464, 579, 708, 771, 894
MslI CAYNNNNRTG 1 cut(s) 792
MspI CCGG 4 cut(s) 79, 116, 214, 225
MunI CAATTG 1 cut(s) 348
MvnI CGCG 3 cut(s) 503, 541, 1000
MwoI GCNNNNNNNGC 2 cut(s) 344, 1052
NdeI CATATG 1 cut(s) 789
NdeII GATC 6 cut(s) 218, 356, 431, 513, 718, 784
NlaIII CATG 4 cut(s) 475, 514, 963, 1060
NlaIV GGNNCC 1 cut(s) 358
NmeAIII GCCGAG 2 cut(s) 91, 734
NsiI ATGCAT 1 cut(s) 1077
NspI RCATGY 2 cut(s) 475, 963
PaeR7I CTCGAG 1 cut(s) 437
PciI ACATGT 1 cut(s) 959
PciSI GCTCTTC 1 cut(s) 72
PfeI GAWTC 7 cut(s) 137, 305, 492, 586, 651, 658, 1021
PflMI CCANNNNNTGG 1 cut(s) 781
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 3 cut(s) 97, 617, 760
PleI GAGTC 2 cut(s) 906, 925
PpsI GAGTC 2 cut(s) 906, 925
PscI ACATGT 1 cut(s) 959
PshAI GACNNNNGTC 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 444
PspEI GGTNACC 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 1011
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 2 cut(s) 671, 807
PspXI VCTCGAGB 1 cut(s) 437
PsuI RGATCY 2 cut(s) 356, 718
RsaI GTAC 2 cut(s) 106, 509
RsaNI GTAC 2 cut(s) 105, 508
RseI CAYNNNNRTG 1 cut(s) 792
SacI GAGCTC 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 7 cut(s) 126, 393, 464, 579, 708, 771, 894
SatI GCNGC 3 cut(s) 96, 616, 759
Sau3AI GATC 6 cut(s) 218, 356, 431, 513, 718, 784
Sau96I GGNCC 2 cut(s) 671, 807
SchI GAGTC 2 cut(s) 907, 925
SduI GDGCHC 2 cut(s) 444, 969
SfaNI GCATC 1 cut(s) 811
Sfr274I CTCGAG 1 cut(s) 437
SinI GGWCC 2 cut(s) 671, 807
SlaI CTCGAG 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 792
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 6 cut(s) 72, 142, 340, 348, 457, 594
SsiI CCGC 1 cut(s) 95
SspMI CTAG 3 cut(s) 90, 450, 552
SstI GAGCTC 1 cut(s) 444
StyI CCWWGG 1 cut(s) 775
TaaI ACNGT 4 cut(s) 577, 734, 863, 890
TaiI ACGT 2 cut(s) 247, 381
TaqI TCGA 4 cut(s) 255, 438, 516, 723
TaqII GACCGA 1 cut(s) 824
TasI AATT 6 cut(s) 72, 142, 340, 348, 457, 594
TatI WGTACW 2 cut(s) 104, 507
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 7 cut(s) 137, 305, 492, 586, 651, 658, 1021
Tru1I TTAA 7 cut(s) 126, 393, 464, 579, 708, 771, 894
Tru9I TTAA 7 cut(s) 126, 393, 464, 579, 708, 771, 894
TscAI CASTG 1 cut(s) 673
TseI GCWGC 2 cut(s) 615, 758
TspDTI ATGAA 8 cut(s) 297, 450, 466, 534, 651, 994, 1013, 1073
TspGWI ACGGA 5 cut(s) 255, 617, 891, 939, 1086
TspRI CASTG 1 cut(s) 673
Van91I CCANNNNNTGG 1 cut(s) 781
VpaK11BI GGWCC 2 cut(s) 671, 807
XapI RAATTY 2 cut(s) 340, 457
XceI RCATGY 2 cut(s) 475, 963
XhoI CTCGAG 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 3 cut(s) 90, 450, 552
ZraI GACGTC 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.