Rorug03G0023200

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
1840822 .. 1843433
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0023200.1

Sequence Viewer

Length: 1572 bp
ATGTCGACCCAAATGGACCAAACCCCAAACCCCAACTCCATCCCAACCAAGAAACGAACCCCCAGGAAGAGGCTCCGAGCTTGCACCAACCACAGCTATGAGCTCACCACGTTTTGCGAACCGGGTCGCCCGATTAGTCCAACCGGCCCATTCCGGGACAACATTTTCATGTTTCTTCAACAATGTGCGGAGCTCACCGACTTCACAGTTCAAGGCATGAGTGTTTGGTTCACTCTTCTTCGTAGCCGTGAGTGTTTGGTTCCTCTTTTTACTATTGAAGAGAACGTGAACACCTCTAAAACCGAGTTCTGTGATCACTGCTTGTCAACTGATTGGAGTAACCATTTTGTGTCGAAGAGAAAGTACCACATGATAATTCCCAAGGATGATTGTTGGACTAAGCCTCTAGATGATAGTGTCTTGGAAGGCACAACGCATCTGTTACATGGTATGATTCACTGTGATGGGATTGGGCATTTGCTATGCATTAATGGACTTAAAGGGGGTTCTAAGCATCTTTGTGGCAGGGAGATCATGGATCTTTGGGATCGGATTTGCACAAATCTTAGAACCAGGAAAATCACAGTTGAAGATTTCTCAAAGAAGCGGTCCATGGAACTTCGACTGCTTCATGGGATTGCTTATGGACATCCTTGGTTCGGTAGATGGGGATACAGGTTTTGCCATGGAAGCTTTGGGGTTGCAGAAGAAACATATGAAAGAGCACTTGATATTCTCAGCTCAATAGAGCTTGAAAAGATCATCCAAGATTTTAGTGACATGGAAGAGTGTGAAGAGCTTAAGAGAGTCATTCATTGCTACAAACATTGGAGCGAATCAAGCTTGGTTACAATCAAAGATCTTCTCAAATTTATGCTCACTGTCAAGGCTGGCTGTCCTGTGAAAAGAAAAGTCAGAAAACCGAAACCGCCTACTACTACTACTCTTTCATCCCTCCGGATCAAGTCCAAGCTGTTTGCTGATGTTATTTCTCACGACCCCGGCAGACATCCTGCAAGAAGACTAAAGATGGCCGCAGATGCGATTGTGCATGTATTGAGAGAAAATGAAAAGAAAGGCTTTGTGAATGGTGAGATGGCGAGGCAAGATGTAAGAGATGCAGCTCTGTTGCATAGTAGAAGAAGTGGGTTGCCTATCAGAGATATAGGTTTGTTGGATAATGTGCTGAGCAAGCTGGACAATGTGATTATTGGGAATCACATTGTCTGCCGCAAGCTGCATGCGATGCCTGGAATTAAGACTGGAATTAGGAAATATACCGTTCATGATCTTCTCGATGGAATCAAGTCCTTGGAACCTGAGAAAGAGTTACTTCTTCCATCACAAGCTCTAGTTCCTGATGTTTACAGTGATGTTCTTTACTTGTACAAGAATGTACTGTTGGGATATCCAGAATCCAAGTTGGTACAATTGGCTACTCAAGTGGTGTTGAACACCAAGTACTTTGTAAAGGAATATCGATTTGGGGATAAGGATGAGCAAGAGCAGTGCCTTGACATTCCTTTGCCAAGTATGACTGATAGTGCTAATCCTGCTGAATCAGGAATCTAA
Functional Annotation

Protein Analysis

523

Amino Acids

59.76

Weight (kDa)

8.62

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 336 - 415 5.9e-14 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 957
AciI CCGC 5 cut(s) 188, 607, 929, 1035, 1231
AclWI GGATC 3 cut(s) 546, 555, 968
AcoI YGGCCR 1 cut(s) 1032
AcsI RAATTY 1 cut(s) 869
AfaI GTAC 5 cut(s) 365, 1388, 1398, 1428, 1463
AfiI CCNNNNNNNGG 3 cut(s) 69, 154, 659
AflII CTTAAG 1 cut(s) 800
AgsI TTSAA 6 cut(s) 179, 212, 278, 590, 755, 1453
AjnI CCWGG 3 cut(s) 62, 572, 1249
AjuI GAANNNNNNNTTGG 4 cut(s) 1385, 1417, 1467, 1499
Alw21I GWGCWC 3 cut(s) 105, 195, 727
AlwI GGATC 3 cut(s) 546, 555, 968
Aor13HI TCCGGA 1 cut(s) 957
AoxI GGCC 2 cut(s) 145, 1032
ApeKI GCWGC 2 cut(s) 1121, 1237
ApoI RAATTY 1 cut(s) 869
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
AseI ATTAAT 1 cut(s) 489
AspS9I GGNCC 3 cut(s) 16, 146, 609
AsuC2I CCSGG 3 cut(s) 123, 155, 1002
AsuHPI GGTGA 3 cut(s) 97, 187, 1103
AvaII GGWCC 2 cut(s) 16, 609
BanII GRGCYC 2 cut(s) 105, 195
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BbsI GAAGAC 1 cut(s) 1027
Bbv12I GWGCWC 3 cut(s) 105, 195, 727
BbvI GCAGC 2 cut(s) 1133, 1224
BccI CCATC 7 cut(s) 47, 458, 660, 1024, 1090, 1292, 1348
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 3 cut(s) 64, 574, 1251
BciVI GTATCC 1 cut(s) 665
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 3 cut(s) 123, 155, 1002
BfaI CTAG 2 cut(s) 407, 1352
BfrI CTTAAG 1 cut(s) 800
BfuI GTATCC 1 cut(s) 665
BglII AGATCT 1 cut(s) 859
BisI GCNGC 4 cut(s) 1035, 1122, 1231, 1238
BlpI GCTNAGC 1 cut(s) 1187
BlsI GCNGC 4 cut(s) 1036, 1123, 1232, 1239
BmcAI AGTACT 1 cut(s) 1463
Bme1390I CCNGG 6 cut(s) 64, 123, 155, 574, 1002, 1251
Bme18I GGWCC 2 cut(s) 16, 609
BmgT120I GGNCC 3 cut(s) 16, 146, 609
BmiI GGNNCC 3 cut(s) 74, 261, 1317
BmrFI CCNGG 6 cut(s) 64, 123, 155, 574, 1002, 1251
BmsI GCATC 5 cut(s) 445, 523, 1030, 1108, 1236
BpiI GAAGAC 1 cut(s) 1027
Bpu1102I GCTNAGC 1 cut(s) 1187
BpuEI CTTGAG 1 cut(s) 1425
BpuMI CCSGG 3 cut(s) 123, 155, 1002
Bsa29I ATCGAT 1 cut(s) 1480
BsaJI CCNNGG 7 cut(s) 62, 381, 612, 653, 685, 1000, 1311
BsaWI WCCGGW 1 cut(s) 957
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 154, 659
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 1267
Bse3DI GCAATG 1 cut(s) 814
BseAI TCCGGA 1 cut(s) 957
BseBI CCWGG 3 cut(s) 64, 574, 1251
BseCI ATCGAT 1 cut(s) 1480
BseDI CCNNGG 7 cut(s) 62, 381, 612, 653, 685, 1000, 1311
BseGI GGATG 7 cut(s) 39, 391, 649, 762, 950, 1009, 1501
BseLI CCNNNNNNNGG 3 cut(s) 69, 154, 659
BseMI GCAATG 1 cut(s) 814
BseMII CTCAG 3 cut(s) 751, 1178, 1311
BseNI ACTGG 1 cut(s) 1267
BseXI GCAGC 2 cut(s) 1133, 1224
BshFI GGCC 2 cut(s) 147, 1034
BshVI ATCGAT 1 cut(s) 1480
BsiHKAI GWGCWC 3 cut(s) 105, 195, 727
BsiSI CCGG 5 cut(s) 122, 144, 154, 958, 1002
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 69, 154, 659
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 2 cut(s) 147, 1034
Bsp1286I GDGCHC 3 cut(s) 105, 195, 727
Bsp13I TCCGGA 1 cut(s) 957
Bsp1407I TGTACA 1 cut(s) 1386
Bsp143I GATC 8 cut(s) 313, 531, 538, 547, 759, 859, 960, 1288
Bsp1720I GCTNAGC 1 cut(s) 1187
Bsp19I CCATGG 2 cut(s) 612, 685
BspACI CCGC 5 cut(s) 188, 607, 929, 1035, 1231
BspANI GGCC 2 cut(s) 147, 1034
BspCNI CTCAG 3 cut(s) 750, 1179, 1312
BspDI ATCGAT 1 cut(s) 1480
BspEI TCCGGA 1 cut(s) 957
BspHI TCATGA 1 cut(s) 1285
BspLI GGNNCC 3 cut(s) 74, 261, 1317
BspPI GGATC 3 cut(s) 546, 555, 968
BspQI GCTCTTC 1 cut(s) 789
BspTI CTTAAG 1 cut(s) 800
BsrDI GCAATG 1 cut(s) 814
BsrFI RCCGGY 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 1386
BsrI ACTGG 1 cut(s) 1267
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 7 cut(s) 62, 381, 612, 653, 685, 1000, 1311
BssMI GATC 8 cut(s) 313, 531, 538, 547, 759, 859, 960, 1288
BssT1I CCWWGG 5 cut(s) 381, 612, 653, 685, 1311
Bst2UI CCWGG 3 cut(s) 64, 574, 1251
Bst4CI ACNGT 7 cut(s) 208, 461, 586, 883, 1282, 1370, 1401
Bst6I CTCTTC 6 cut(s) 62, 240, 273, 350, 780, 789
BstAFI CTTAAG 1 cut(s) 800
BstAPI GCANNNNNTGC 1 cut(s) 1246
BstAUI TGTACA 1 cut(s) 1386
BstC8I GCNNGC 5 cut(s) 82, 892, 1193, 1235, 1242
BstDEI CTNAG 6 cut(s) 399, 510, 566, 737, 1187, 1320
BstDSI CCRYGG 2 cut(s) 612, 685
BstF5I GGATG 7 cut(s) 39, 391, 649, 762, 950, 1009, 1501
BstKTI GATC 8 cut(s) 316, 534, 541, 550, 762, 862, 963, 1291
BstMBI GATC 8 cut(s) 313, 531, 538, 547, 759, 859, 960, 1288
BstMWI GCNNNNNNNGC 6 cut(s) 690, 840, 1040, 1192, 1246, 1553
BstNI CCWGG 3 cut(s) 64, 574, 1251
BstNSI RCATGY 2 cut(s) 1055, 1244
BstSCI CCNGG 6 cut(s) 62, 121, 153, 572, 1000, 1249
BstV1I GCAGC 2 cut(s) 1133, 1224
BstV2I GAAGAC 1 cut(s) 1027
BstX2I RGATCY 2 cut(s) 538, 859
BstYI RGATCY 2 cut(s) 538, 859
Bsu15I ATCGAT 1 cut(s) 1480
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 2 cut(s) 147, 1034
BsuTUI ATCGAT 1 cut(s) 1480
BtgI CCRYGG 2 cut(s) 612, 685
BtgZI GCGATG 1 cut(s) 1259
BtsCI GGATG 7 cut(s) 39, 391, 649, 762, 950, 1009, 1501
BtsI GCAGTG 2 cut(s) 316, 1514
BtsIMutI CAGTG 5 cut(s) 316, 457, 879, 1375, 1514
Cac8I GCNNGC 5 cut(s) 82, 892, 1193, 1235, 1242
CciI TCATGA 1 cut(s) 1285
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 3 cut(s) 16, 146, 609
ClaI ATCGAT 1 cut(s) 1480
Csp6I GTAC 5 cut(s) 364, 1387, 1397, 1427, 1462
CviQI GTAC 5 cut(s) 364, 1387, 1397, 1427, 1462
DdeI CTNAG 6 cut(s) 399, 510, 566, 737, 1187, 1320
DpnI GATC 8 cut(s) 315, 533, 540, 549, 761, 861, 962, 1290
DpnII GATC 8 cut(s) 313, 531, 538, 547, 759, 859, 960, 1288
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 6 cut(s) 62, 240, 273, 350, 780, 789
EarI CTCTTC 6 cut(s) 62, 240, 273, 350, 780, 789
Ecl136II GAGCTC 2 cut(s) 103, 193
Eco130I CCWWGG 5 cut(s) 381, 612, 653, 685, 1311
Eco24I GRGCYC 2 cut(s) 105, 195
Eco32I GATATC 1 cut(s) 1409
Eco47I GGWCC 2 cut(s) 16, 609
Eco53kI GAGCTC 2 cut(s) 103, 193
EcoICRI GAGCTC 2 cut(s) 103, 193
EcoRII CCWGG 3 cut(s) 62, 572, 1249
EcoRV GATATC 1 cut(s) 1409
EcoT14I CCWWGG 5 cut(s) 381, 612, 653, 685, 1311
EcoT22I ATGCAT 1 cut(s) 488
EcoT38I GRGCYC 2 cut(s) 105, 195
ErhI CCWWGG 5 cut(s) 381, 612, 653, 685, 1311
FalI AAGNNNNNCTT 4 cut(s) 1064, 1096, 1317, 1349
FaqI GGGAC 1 cut(s) 170
FauNDI CATATG 1 cut(s) 715
FbaI TGATCA 1 cut(s) 313
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 1035, 1122, 1231, 1238
FokI GGATG 7 cut(s) 26, 398, 636, 749, 937, 996, 1508
FriOI GRGCYC 2 cut(s) 105, 195
Fsp4HI GCNGC 4 cut(s) 1035, 1122, 1231, 1238
FspBI CTAG 2 cut(s) 407, 1352
GluI GCNGC 4 cut(s) 1035, 1122, 1231, 1238
HaeIII GGCC 2 cut(s) 147, 1034
HapII CCGG 5 cut(s) 122, 144, 154, 958, 1002
HincII GTYRAC 2 cut(s) 6, 327
HindII GTYRAC 2 cut(s) 6, 327
HindIII AAGCTT 2 cut(s) 691, 841
HinfI GANTC 8 cut(s) 454, 807, 836, 1216, 1302, 1415, 1559, 1566
HpaII CCGG 5 cut(s) 122, 144, 154, 958, 1002
HphI GGTGA 3 cut(s) 97, 187, 1103
Hpy166II GTNNAC 5 cut(s) 6, 231, 289, 327, 1366
Hpy188I TCNGA 4 cut(s) 77, 552, 917, 1160
Hpy188III TCNNGA 8 cut(s) 407, 958, 995, 1286, 1295, 1358, 1412, 1563
Hpy8I GTNNAC 5 cut(s) 6, 231, 289, 327, 1366
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 7 cut(s) 208, 461, 586, 883, 1282, 1370, 1401
HpyCH4IV ACGT 2 cut(s) 110, 285
HpyCH4V TGCA 9 cut(s) 84, 486, 558, 704, 1016, 1051, 1121, 1132, 1240
HpyF10VI GCNNNNNNNGC 6 cut(s) 690, 840, 1040, 1192, 1246, 1553
HpyF3I CTNAG 6 cut(s) 399, 510, 566, 737, 1187, 1320
HpySE526I ACGT 2 cut(s) 110, 285
Kpn2I TCCGGA 1 cut(s) 957
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 8 cut(s) 313, 531, 538, 547, 759, 859, 960, 1288
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 3 cut(s) 78, 190, 831
Lsp1109I GCAGC 2 cut(s) 1133, 1224
LweI GCATC 5 cut(s) 445, 523, 1030, 1108, 1236
MaeI CTAG 2 cut(s) 407, 1352
MaeII ACGT 2 cut(s) 110, 285
MaeIII GTNAC 5 cut(s) 338, 441, 776, 847, 1329
MalI GATC 8 cut(s) 315, 533, 540, 549, 761, 861, 962, 1290
MboI GATC 8 cut(s) 313, 531, 538, 547, 759, 859, 960, 1288
MfeI CAATTG 1 cut(s) 1430
MflI RGATCY 2 cut(s) 538, 859
MhlI GDGCHC 3 cut(s) 105, 195, 727
MluCI AATT 5 cut(s) 375, 869, 1254, 1266, 1430
MlyI GAGTC 1 cut(s) 816
MmeI TCCRAC 3 cut(s) 164, 374, 1155
MnlI CCTC 6 cut(s) 63, 273, 304, 414, 965, 1095
Mph1103I ATGCAT 1 cut(s) 488
MroI TCCGGA 1 cut(s) 957
MseI TTAA 4 cut(s) 489, 498, 801, 1257
MslI CAYNNNNRTG 4 cut(s) 96, 167, 462, 519
MspCI CTTAAG 1 cut(s) 800
MspI CCGG 5 cut(s) 122, 144, 154, 958, 1002
MspR9I CCNGG 6 cut(s) 64, 123, 155, 574, 1002, 1251
MunI CAATTG 1 cut(s) 1430
MvaI CCWGG 3 cut(s) 64, 574, 1251
MwoI GCNNNNNNNGC 6 cut(s) 690, 840, 1040, 1192, 1246, 1553
NciI CCSGG 3 cut(s) 123, 155, 1002
NcoI CCATGG 2 cut(s) 612, 685
NdeI CATATG 1 cut(s) 715
NdeII GATC 8 cut(s) 313, 531, 538, 547, 759, 859, 960, 1288
NlaIV GGNNCC 3 cut(s) 74, 261, 1317
NmuCI GTSAC 1 cut(s) 776
NsiI ATGCAT 1 cut(s) 488
NspI RCATGY 2 cut(s) 1055, 1244
PaeI GCATGC 1 cut(s) 1244
PagI TCATGA 1 cut(s) 1285
PciSI GCTCTTC 1 cut(s) 789
PfeI GAWTC 7 cut(s) 454, 836, 1216, 1302, 1415, 1559, 1566
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 4 cut(s) 1036, 1123, 1232, 1239
PleI GAGTC 1 cut(s) 815
PpsI GAGTC 1 cut(s) 815
PshBI ATTAAT 1 cut(s) 489
Psp124BI GAGCTC 2 cut(s) 105, 195
Psp6I CCWGG 3 cut(s) 62, 572, 1249
PspGI CCWGG 3 cut(s) 62, 572, 1249
PspN4I GGNNCC 3 cut(s) 74, 261, 1317
PspPI GGNCC 3 cut(s) 16, 146, 609
PsrI GAACNNNNNNTAC 2 cut(s) 1445, 1477
PsuI RGATCY 2 cut(s) 538, 859
RsaI GTAC 5 cut(s) 365, 1388, 1398, 1428, 1463
RsaNI GTAC 5 cut(s) 364, 1387, 1397, 1427, 1462
RseI CAYNNNNRTG 4 cut(s) 96, 167, 462, 519
SacI GAGCTC 2 cut(s) 105, 195
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 4 cut(s) 489, 498, 801, 1257
SatI GCNGC 4 cut(s) 1035, 1122, 1231, 1238
Sau3AI GATC 8 cut(s) 313, 531, 538, 547, 759, 859, 960, 1288
Sau96I GGNCC 3 cut(s) 16, 146, 609
ScaI AGTACT 1 cut(s) 1463
SchI GAGTC 1 cut(s) 816
ScrFI CCNGG 6 cut(s) 64, 123, 155, 574, 1002, 1251
SduI GDGCHC 3 cut(s) 105, 195, 727
SfaNI GCATC 5 cut(s) 445, 523, 1030, 1108, 1236
SinI GGWCC 2 cut(s) 16, 609
SmiMI CAYNNNNRTG 4 cut(s) 96, 167, 462, 519
SmlI CTYRAG 2 cut(s) 800, 1440
SmoI CTYRAG 2 cut(s) 800, 1440
SphI GCATGC 1 cut(s) 1244
Sse9I AATT 5 cut(s) 375, 869, 1254, 1266, 1430
SsiI CCGC 5 cut(s) 188, 607, 929, 1035, 1231
SspMI CTAG 2 cut(s) 407, 1352
SstI GAGCTC 2 cut(s) 105, 195
StyD4I CCNGG 6 cut(s) 62, 121, 153, 572, 1000, 1249
StyI CCWWGG 5 cut(s) 381, 612, 653, 685, 1311
TaaI ACNGT 7 cut(s) 208, 461, 586, 883, 1282, 1370, 1401
TaiI ACGT 2 cut(s) 113, 288
TaqI TCGA 5 cut(s) 5, 353, 622, 1296, 1480
TasI AATT 5 cut(s) 375, 869, 1254, 1266, 1430
TatI WGTACW 3 cut(s) 1386, 1396, 1461
TauI GCSGC 2 cut(s) 1037, 1233
TfiI GAWTC 7 cut(s) 454, 836, 1216, 1302, 1415, 1559, 1566
Tru1I TTAA 4 cut(s) 489, 498, 801, 1257
Tru9I TTAA 4 cut(s) 489, 498, 801, 1257
TscAI CASTG 5 cut(s) 323, 464, 886, 1375, 1514
TseFI GTSAC 1 cut(s) 776
TseI GCWGC 2 cut(s) 1121, 1237
Tsp45I GTSAC 1 cut(s) 776
TspDTI ATGAA 7 cut(s) 157, 620, 732, 803, 939, 1083, 1274
TspRI CASTG 5 cut(s) 323, 464, 886, 1375, 1514
Vha464I CTTAAG 1 cut(s) 800
VpaK11BI GGWCC 2 cut(s) 16, 609
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 1 cut(s) 869
XbaI TCTAGA 1 cut(s) 406
XceI RCATGY 2 cut(s) 1055, 1244
XcmI CCANNNNNNNNNTGG 1 cut(s) 692
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 407, 1352
ZrmI AGTACT 1 cut(s) 1463
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.