Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005861

Physical Location & Seq

Genomic Coordinates Reverse (-)

27749411 .. 27751815

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G308100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACAAGACTCAAGAGCATGTTGTTCGATGGCCAACTTTGTTCAACGAGGCCCGTCCACATCTTCAACTTTGGCGACTCCAACTCGGACACGGGTGGACTCGCCGCCGGACTAGGCTACTCCGTCAATCCCCCCAACGGCCGTACATTCTTCGGCAGCTCCACCGGTCGCCTCTCCGATGGACGCCTCGTCATCGACCTCCTCTGCCAGAGTCTGAATTTGAGTCTATTGAGCCCATACCTAGACTCTTTGGTAGGCTCCAACTTCTCAAATGGGGCAAACTTTGCCGTTGTCGGGTCCTCTACCATCCCGAAGCGTGTCCCTTTTTCTTTGAATATTCAAGTCATGCAGTTCATCCACTTCAAGGCTATTGCAGCTGCAGGTTCGAAACATTGGATAAATGATGAAGATTTCCGGAAAGCACTTTACATGATCGATATCGGACAAAATGACCTTTCTGATTCTTTCACTAATGACCTTTCATACGTTCAAGTAACAGAGAGAATTCCTTCAGTTATTGAAGAAATCAAGAGTGCGGTTAAGGCTTTATACGATCAAGGTGGAAGGAACTTTTGGATACACAACACCGGGCCGTTGGGTTGTCTCCCTCAAAAACTTTCATTAGTGGAGAAGAAGGATTTGGATCCATATGGATGTCTTTCGAGTTACAATGCGGCTGCAAGATCGTTCAATGAAGCATTGCTCCATTTGTGCAACGGGATGAGATCTGAATTGAAGGATGCTGTGATAGTTTATGTGGATATATATGCCATCAAGTATGATCTCATTGCCAACTCCACCAAATACGGTTTCTCTACGCCGCTAATGGCATGCTGTGGCAACGGAGGTCCTCCGTACAATTTCAATGTCAGGGGGCTCTGCGGTCAACCTGGCTCTCATGTTTGCGACGAAGGAACCCGATTTGTGAGCTGGGATGGAATTCATTACACCGAAGCCGCAAACACCATCGTGGCCTCAAAGATACTTTCCACGAATTATTCCACACCACGCATTCCATTTGATTTCTTTTGTGGCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

347

Amino Acids

37.79

Weight (kDa)

6.37

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09390 AT1G56670 AT1G56670
fragaria_vesca	FvH4_6g08070 FvH4_6g08070
malus_domestica	MD12G1202600.v1.1
prunus_persica	Prupe.6G307900_v2.0.a1 Prupe.6G308000_v2.0.a1 Prupe.6G308000_v2.0.a1 Prupe.6G308100_v2.0.a1 Prupe.6G308400_v2.0.a1 Prupe.6G308400_v2.0.a1
pyrus_communis	pycom12g18910
rosa_chinensis	RchiOBHm_Chr3g0457751
rosa_laevigata	RLG00000025189
rosa_multiflora	Rmu_sc0012092.1_g000001 Rmu_ssc0000446.1_g000033
rosa_roxburghii	Rroxscaffold_6G00421520
rosa_rugosa	Rorug03G0023200 Rorug03G0023300 Rorug03G0023400 Rorug03G0023400
rosa_samantha	Rh3AG083800 Rh3BG086300 Rh3CG086600 Rh3DG087200
rosa_wichuraiana	Rw0G012220 Rw3G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	371
AccIII	TCCGGA	1 cut(s)	414
AciI	CCGC	6 cut(s)	105, 536, 674, 821, 882, 957
AclWI	GGATC	2 cut(s)	638, 651
AcoI	YGGCCR	2 cut(s)	31, 139
AcsI	RAATTY	3 cut(s)	217, 504, 939
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	2 cut(s)	145, 857
AfiI	CCNNNNNNNGG	3 cut(s)	137, 294, 364
AgeI	ACCGGT	1 cut(s)	164
AhdI	GACNNNNNGTC	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	889
AjuI	GAANNNNNNNTTGG	6 cut(s)	556, 588, 623, 655, 794, 826
AleI	CACNNNNGTG	1 cut(s)	968
AluBI	AGCT	3 cut(s)	159, 377, 930
AluI	AGCT	3 cut(s)	159, 377, 930
Alw26I	GTCTC	1 cut(s)	608
AlwI	GGATC	2 cut(s)	638, 651
AlwNI	CAGNNNCTG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	414
AoxI	GGCC	5 cut(s)	31, 50, 139, 590, 972
ApeKI	GCWGC	4 cut(s)	156, 374, 377, 677
ApoI	RAATTY	3 cut(s)	217, 504, 939
AsiGI	ACCGGT	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	508
AspS9I	GGNCC	4 cut(s)	51, 297, 590, 848
AsuC2I	CCSGG	1 cut(s)	589
AsuII	TTCGAA	1 cut(s)	386
AvaII	GGWCC	2 cut(s)	297, 848
BalI	TGGCCA	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	643
BanII	GRGCYC	2 cut(s)	236, 879
BbvI	GCAGC	4 cut(s)	168, 364, 386, 664
BccI	CCATC	6 cut(s)	23, 173, 314, 779, 929, 974
BceAI	ACGGC	4 cut(s)	126, 154, 272, 577
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	891
BciVI	GTATCC	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	608
BfaI	CTAG	3 cut(s)	113, 242, 1039
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	570
BglII	AGATCT	1 cut(s)	725
BisI	GCNGC	8 cut(s)	105, 157, 375, 378, 675, 678, 821, 957
BlsI	GCNGC	8 cut(s)	106, 158, 376, 379, 676, 679, 822, 958
Bme1390I	CCNGG	2 cut(s)	589, 891
Bme18I	GGWCC	2 cut(s)	297, 848
BmeRI	GACNNNNNGTC	1 cut(s)	188
BmgT120I	GGNCC	4 cut(s)	51, 297, 590, 848
BmiI	GGNNCC	4 cut(s)	259, 298, 645, 916
BmrFI	CCNGG	2 cut(s)	589, 891
BmsI	GCATC	1 cut(s)	730
Bpu14I	TTCGAA	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	589
Bsa29I	ATCGAT	1 cut(s)	435
BsaBI	GATNNNNATC	2 cut(s)	437, 642
BsaHI	GRCGYC	1 cut(s)	184
BsaWI	WCCGGW	2 cut(s)	164, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 294, 364
Bse118I	RCCGGY	1 cut(s)	164
Bse3DI	GCAATG	2 cut(s)	698, 786
Bse8I	GATNNNNATC	2 cut(s)	437, 642
BseAI	TCCGGA	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	891
BseCI	ATCGAT	1 cut(s)	435
BseGI	GGATG	6 cut(s)	306, 354, 659, 726, 745, 940
BseJI	GATNNNNATC	2 cut(s)	437, 642
BseLI	CCNNNNNNNGG	3 cut(s)	137, 294, 364
BseMI	GCAATG	2 cut(s)	698, 786
BseRI	GAGGAG	1 cut(s)	191
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	4 cut(s)	168, 364, 386, 664
BseYI	CCCAGC	1 cut(s)	930
Bsh1285I	CGRYCG	2 cut(s)	142, 169
BshFI	GGCC	5 cut(s)	33, 52, 141, 592, 974
BshTI	ACCGGT	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	435
BsiEI	CGRYCG	2 cut(s)	142, 169
BsiSI	CCGG	4 cut(s)	108, 165, 415, 588
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	137, 294, 364
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	1011
BsnI	GGCC	5 cut(s)	33, 52, 141, 592, 974
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	236, 879
Bsp13I	TCCGGA	1 cut(s)	414
Bsp143I	GATC	6 cut(s)	432, 553, 643, 683, 725, 781
BspACI	CCGC	6 cut(s)	105, 536, 674, 821, 882, 957
BspANI	GGCC	5 cut(s)	33, 52, 141, 592, 974
BspDI	ATCGAT	1 cut(s)	435
BspEI	TCCGGA	1 cut(s)	414
BspLI	GGNNCC	4 cut(s)	259, 298, 645, 916
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	638, 651
BspT104I	TTCGAA	1 cut(s)	386
BsrDI	GCAATG	2 cut(s)	698, 786
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssMI	GATC	6 cut(s)	432, 553, 643, 683, 725, 781
BssNI	GRCGYC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	1 cut(s)	809
BstACI	GRCGYC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	832
BstF5I	GGATG	6 cut(s)	306, 354, 659, 726, 745, 940
BstKTI	GATC	6 cut(s)	435, 556, 646, 686, 728, 784
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	6 cut(s)	432, 553, 643, 683, 725, 781
BstMCI	CGRYCG	2 cut(s)	142, 169
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 374, 542
BstNI	CCWGG	1 cut(s)	891
BstNSI	RCATGY	2 cut(s)	22, 834
BstSCI	CCNGG	2 cut(s)	587, 889
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	4 cut(s)	168, 364, 386, 664
BstX2I	RGATCY	2 cut(s)	643, 725
BstYI	RGATCY	2 cut(s)	643, 725
BstZI	CGGCCG	1 cut(s)	139
Bsu15I	ATCGAT	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	5 cut(s)	33, 52, 141, 592, 974
BsuTUI	ATCGAT	1 cut(s)	435
BtsCI	GGATG	6 cut(s)	306, 354, 659, 726, 745, 940
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	832
CaiI	CAGNNNCTG	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	4 cut(s)	51, 297, 590, 848
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	144, 856
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	5 cut(s)	19, 346, 430, 831, 899
CviQI	GTAC	2 cut(s)	144, 856
DpnI	GATC	6 cut(s)	434, 555, 645, 685, 727, 783
DpnII	GATC	6 cut(s)	432, 553, 643, 683, 725, 781
DriI	GACNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	2 cut(s)	31, 139
EagI	CGGCCG	1 cut(s)	139
Eam1105I	GACNNNNNGTC	1 cut(s)	188
EclXI	CGGCCG	1 cut(s)	139
Eco24I	GRGCYC	2 cut(s)	236, 879
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	297, 848
Eco52I	CGGCCG	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	495
EcoO109I	RGGNCCY	2 cut(s)	297, 848
EcoRI	GAATTC	2 cut(s)	504, 939
EcoRII	CCWGG	1 cut(s)	889
EcoRV	GATATC	1 cut(s)	439
EcoT38I	GRGCYC	2 cut(s)	236, 879
FaeI	CATG	5 cut(s)	22, 349, 433, 834, 902
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	5 cut(s)	18, 345, 429, 830, 898
FauNDI	CATATG	1 cut(s)	649
Fnu4HI	GCNGC	8 cut(s)	105, 157, 375, 378, 675, 678, 821, 957
FokI	GGATG	6 cut(s)	293, 341, 666, 733, 752, 947
FriOI	GRGCYC	2 cut(s)	236, 879
Fsp4HI	GCNGC	8 cut(s)	105, 157, 375, 378, 675, 678, 821, 957
FspBI	CTAG	3 cut(s)	113, 242, 1039
GluI	GCNGC	8 cut(s)	105, 157, 375, 378, 675, 678, 821, 957
GsaI	CCCAGC	1 cut(s)	934
HaeIII	GGCC	5 cut(s)	33, 52, 141, 592, 974
HapII	CCGG	4 cut(s)	108, 165, 415, 588
HgaI	GACGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	5 cut(s)	22, 349, 433, 834, 902
HincII	GTYRAC	1 cut(s)	887
HindII	GTYRAC	1 cut(s)	887
HinfI	GANTC	7 cut(s)	9, 77, 99, 211, 223, 245, 461
HpaII	CCGG	4 cut(s)	108, 165, 415, 588
Hpy166II	GTNNAC	3 cut(s)	58, 98, 887
Hpy188I	TCNGA	6 cut(s)	88, 178, 216, 443, 460, 730
Hpy188III	TCNNGA	4 cut(s)	13, 310, 415, 529
Hpy8I	GTNNAC	3 cut(s)	58, 98, 887
Hpy99I	CGWCG	1 cut(s)	911
HpyAV	CCTTC	5 cut(s)	519, 558, 628, 730, 905
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	5 cut(s)	349, 374, 380, 680, 714
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 374, 542
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	5 cut(s)	22, 349, 433, 834, 902
Kpn2I	TCCGGA	1 cut(s)	414
Kzo9I	GATC	6 cut(s)	432, 553, 643, 683, 725, 781
LmnI	GCTCC	3 cut(s)	164, 263, 708
Lsp1109I	GCAGC	4 cut(s)	168, 364, 386, 664
LweI	GCATC	1 cut(s)	730
MaeI	CTAG	3 cut(s)	113, 242, 1039
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	493, 665
MalI	GATC	6 cut(s)	434, 555, 645, 685, 727, 783
MboI	GATC	6 cut(s)	432, 553, 643, 683, 725, 781
MboII	GAAGA	5 cut(s)	55, 142, 419, 533, 643
MflI	RGATCY	2 cut(s)	643, 725
MhlI	GDGCHC	2 cut(s)	236, 879
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	6 cut(s)	217, 504, 731, 859, 939, 994
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	6 cut(s)	3, 71, 93, 220, 232, 239
MmeI	TCCRAC	2 cut(s)	105, 285
Mox20I	TGGCCA	1 cut(s)	33
MroI	TCCGGA	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	652, 968
Msp20I	TGGCCA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	4 cut(s)	108, 165, 415, 588
MspR9I	CCNGG	2 cut(s)	589, 891
Mva1269I	GAATGC	1 cut(s)	1011
MvaI	CCWGG	1 cut(s)	891
MwoI	GCNNNNNNNGC	3 cut(s)	284, 374, 542
NciI	CCSGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	6 cut(s)	432, 553, 643, 683, 725, 781
NlaIII	CATG	5 cut(s)	22, 349, 433, 834, 902
NlaIV	GGNNCC	4 cut(s)	259, 298, 645, 916
NspI	RCATGY	2 cut(s)	22, 834
NspV	TTCGAA	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	968
PaeI	GCATGC	1 cut(s)	834
PctI	GAATGC	1 cut(s)	1011
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	461
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	8 cut(s)	106, 158, 376, 379, 676, 679, 822, 958
PleI	GAGTC	6 cut(s)	3, 71, 93, 219, 231, 239
PpsI	GAGTC	6 cut(s)	3, 71, 93, 219, 231, 239
PpuMI	RGGWCCY	2 cut(s)	297, 848
Psp5II	RGGWCCY	2 cut(s)	297, 848
Psp6I	CCWGG	1 cut(s)	889
PspFI	CCCAGC	1 cut(s)	930
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	4 cut(s)	259, 298, 645, 916
PspPI	GGNCC	4 cut(s)	51, 297, 590, 848
PspPPI	RGGWCCY	2 cut(s)	297, 848
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	643, 725
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	145, 857
RsaNI	GTAC	2 cut(s)	144, 856
RseI	CAYNNNNRTG	2 cut(s)	652, 968
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	8 cut(s)	105, 157, 375, 378, 675, 678, 821, 957
Sau3AI	GATC	6 cut(s)	432, 553, 643, 683, 725, 781
Sau96I	GGNCC	4 cut(s)	51, 297, 590, 848
SchI	GAGTC	6 cut(s)	3, 71, 93, 220, 232, 239
ScrFI	CCNGG	2 cut(s)	589, 891
SduI	GDGCHC	2 cut(s)	236, 879
SfaNI	GCATC	1 cut(s)	730
SfcI	CTRYAG	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	2 cut(s)	297, 848
SmiMI	CAYNNNNRTG	2 cut(s)	652, 968
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SphI	GCATGC	1 cut(s)	834
Sse9I	AATT	6 cut(s)	217, 504, 731, 859, 939, 994
SsiI	CCGC	6 cut(s)	105, 536, 674, 821, 882, 957
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	3 cut(s)	113, 242, 1039
StyD4I	CCNGG	2 cut(s)	587, 889
TaaI	ACNGT	1 cut(s)	809
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	5 cut(s)	27, 195, 386, 435, 662
TasI	AATT	6 cut(s)	217, 504, 731, 859, 939, 994
TauI	GCSGC	4 cut(s)	107, 677, 823, 959
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TseI	GCWGC	4 cut(s)	156, 374, 377, 677
TspDTI	ATGAA	6 cut(s)	343, 420, 471, 609, 708, 932
TspGWI	ACGGA	3 cut(s)	112, 843, 858
VpaK11BI	GGWCC	2 cut(s)	297, 848
XapI	RAATTY	3 cut(s)	217, 504, 939
XceI	RCATGY	2 cut(s)	22, 834
XmnI	GAANNNNTTC	1 cut(s)	508
XspI	CTAG	3 cut(s)	113, 242, 1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.