Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005861

Physical Location & Seq

Genomic Coordinates Reverse (-)

42660656 .. 42664587

Gene Structure 3932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAAAGCCACAGAGGAAGAAGAAGACTATGATCCTTTGTTGTTAGAGAATGGAAATCTTGAAAAGAAAGATAGGGAGGGTTTAGGAAATCCAACAGCGCCTTCTCTTAATCATCAAGCATTGCATTTGCCAAAACATAATATAGCCTTTCATGAACAAATCCCAACTGAAGAAAATGAAAATTACCGTGTCACATCTCAACAGAAGAAGCAGCAGCAGCAGCAGCAGCATTGCTTCGCCGTGTCCATGGCTTTCTCTTTCTCCATCTCCGCCATATTGCTTCTCGTTCTCCTCTCATTCTCCGTCACCGGCCAGCAACCCAGCTATAAAGGCCCCATCATCTTCAACTTCGGAGACTCCAACTCCGACACGGGCGGACTTGTCGCTGGACTCGGCTACACCATCAACCCCCCTTACGGCCGCACCTACTTCCGGCGATCCACAGGCCGGATGTCCGACGGACGCCTCATCATCGACTTCCTCTGCCAAAGTTTGAATACAAGCCTATTGGCTCCATATCTAGACTCTCTGTCAGGGTCTAAGTTCACAAATGGGGCGAATTTTGCAATAGTCGGGTCGTCTATCTTCCCTAAGCGCATCCCTTTCTCTTTGAGCATCCAAGTCATGCAGTTCCTTCATTTCAAAGCTACTGCAGTCCAGCAGAGGGACATGGATGCATATGGATGCCTCTCGACCTACAATGCGGCTGCAAAATTGTTCAATGTAGGATTGCGTCATACATGCGATGAGATGAGATTTGAATTGAAGGATGTTAAAGTAGTATATGTAGATTTATATGCCATCAAGTATGACCTCATTGCTAACTACACCAAATACGGTTTCACTAGTCCTCTAATGACATGCTGTGGAAACGGAGGTCCTCCATACAACTACAACATGAGGCTGACATGCAGCTATCCCGGTTCTCAGGTTTGCGAAGATGGATCCCAACTCATAAGTTGGGATGGGATTCACTACACTGAAGCTGCAAATACCATTGTAGCTTCAAAAATACTTTCCACGGATTATTCTATACCGCCAATTCCATTTGATTTCTTTGTTCATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

356

Amino Acids

39.71

Weight (kDa)

5.99

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	114 - 218	1.2e-11	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL	PF00657	229 - 338	1.6e-13	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09390 AT1G56670 AT1G56670
fragaria_vesca	FvH4_6g08070 FvH4_6g08070
malus_domestica	MD12G1202600.v1.1
prunus_persica	Prupe.6G307900_v2.0.a1 Prupe.6G308000_v2.0.a1 Prupe.6G308000_v2.0.a1 Prupe.6G308100_v2.0.a1 Prupe.6G308400_v2.0.a1 Prupe.6G308400_v2.0.a1
pyrus_communis	pycom12g18910
rosa_chinensis	RchiOBHm_Chr3g0457751
rosa_laevigata	RLG00000025189
rosa_multiflora	Rmu_sc0012092.1_g000001 Rmu_ssc0000446.1_g000033
rosa_roxburghii	Rroxscaffold_6G00421520
rosa_rugosa	Rorug03G0023200 Rorug03G0023300 Rorug03G0023400 Rorug03G0023400
rosa_samantha	Rh3AG083800 Rh3BG086300 Rh3CG086600 Rh3DG087200
rosa_wichuraiana	Rw0G012220 Rw3G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	270, 375, 421, 704, 1037
AclWI	GGATC	4 cut(s)	26, 432, 939, 952
AcoI	YGGCCR	2 cut(s)	310, 418
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	2 cut(s)	189, 1002
AcyI	GRCGYC	1 cut(s)	463
AfiI	CCNNNNNNNGG	4 cut(s)	416, 432, 447, 664
AgsI	TTSAA	8 cut(s)	62, 346, 496, 643, 721, 761, 766, 1008
AhdI	GACNNNNNGTC	1 cut(s)	529
AhlI	ACTAGT	1 cut(s)	845
AjuI	GAANNNNNNNTTGG	4 cut(s)	85, 117, 824, 856
AluBI	AGCT	5 cut(s)	324, 647, 915, 986, 1004
AluI	AGCT	5 cut(s)	324, 647, 915, 986, 1004
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	4 cut(s)	26, 432, 939, 952
AoxI	GGCC	4 cut(s)	310, 331, 418, 445
ApeKI	GCWGC	9 cut(s)	211, 214, 217, 220, 223, 226, 707, 912, 986
ApoI	RAATTY	1 cut(s)	559
AspLEI	GCGC	2 cut(s)	100, 597
AspS9I	GGNCC	2 cut(s)	332, 878
AsuC2I	CCSGG	1 cut(s)	921
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	878
BamHI	GGATCC	1 cut(s)	944
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	9 cut(s)	223, 226, 229, 232, 235, 238, 694, 924, 973
BccI	CCATC	6 cut(s)	272, 344, 410, 809, 935, 959
BceAI	ACGGC	2 cut(s)	224, 433
BcnI	CCSGG	1 cut(s)	921
BcoDI	GTCTC	1 cut(s)	348
BcuI	ACTAGT	1 cut(s)	845
BfaI	CTAG	2 cut(s)	521, 846
BfmI	CTRYAG	1 cut(s)	651
BfoI	RGCGCY	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	921
Bme18I	GGWCC	1 cut(s)	878
BmeRI	GACNNNNNGTC	1 cut(s)	529
BmgT120I	GGNCC	2 cut(s)	332, 878
BmiI	GGNNCC	3 cut(s)	334, 513, 946
BmrFI	CCNGG	1 cut(s)	921
BmsI	GCATC	4 cut(s)	606, 624, 664, 674
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	921
BsaHI	GRCGYC	1 cut(s)	463
BsaJI	CCNNGG	2 cut(s)	246, 1020
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	4 cut(s)	416, 432, 447, 664
Bse118I	RCCGGY	1 cut(s)	308
Bse3DI	GCAATG	3 cut(s)	119, 229, 816
BseDI	CCNNGG	2 cut(s)	246, 1020
BseGI	GGATG	7 cut(s)	456, 597, 615, 679, 689, 775, 970
BseLI	CCNNNNNNNGG	4 cut(s)	416, 432, 447, 664
BseMI	GCAATG	3 cut(s)	119, 229, 816
BseMII	CTCAG	1 cut(s)	941
BseRI	GAGGAG	1 cut(s)	281
BseX3I	CGGCCG	1 cut(s)	418
BseXI	GCAGC	9 cut(s)	223, 226, 229, 232, 235, 238, 694, 924, 973
BseYI	CCCAGC	1 cut(s)	320
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	4 cut(s)	312, 333, 420, 447
BsiEI	CGRYCG	1 cut(s)	421
BsiSI	CCGG	4 cut(s)	309, 433, 448, 921
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	4 cut(s)	416, 432, 447, 664
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	4 cut(s)	312, 333, 420, 447
Bsp143I	GATC	3 cut(s)	31, 437, 944
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	5 cut(s)	270, 375, 421, 704, 1037
BspANI	GGCC	4 cut(s)	312, 333, 420, 447
BspCNI	CTCAG	1 cut(s)	940
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	3 cut(s)	334, 513, 946
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	4 cut(s)	26, 432, 939, 952
BsrDI	GCAATG	3 cut(s)	119, 229, 816
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	246, 1020
BssMI	GATC	3 cut(s)	31, 437, 944
BssNI	GRCGYC	1 cut(s)	463
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	188, 839
BstACI	GRCGYC	1 cut(s)	463
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	3 cut(s)	540, 591, 927
BstDSI	CCRYGG	2 cut(s)	246, 1020
BstF5I	GGATG	7 cut(s)	456, 597, 615, 679, 689, 775, 970
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	100, 597
BstKTI	GATC	3 cut(s)	34, 440, 947
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	3 cut(s)	31, 437, 944
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	6 cut(s)	217, 220, 223, 226, 330, 563
BstNSI	RCATGY	3 cut(s)	744, 864, 912
BstSCI	CCNGG	1 cut(s)	919
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	9 cut(s)	223, 226, 229, 232, 235, 238, 694, 924, 973
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	944
BstYI	RGATCY	1 cut(s)	944
BstZI	CGGCCG	1 cut(s)	418
BsuRI	GGCC	4 cut(s)	312, 333, 420, 447
BtgI	CCRYGG	2 cut(s)	246, 1020
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	7 cut(s)	456, 597, 615, 679, 689, 775, 970
BtsIMutI	CAGTG	1 cut(s)	978
Cac8I	GCNNGC	1 cut(s)	314
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	2 cut(s)	100, 597
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	332, 878
CseI	GACGC	2 cut(s)	471, 722
CviAII	CATG	8 cut(s)	152, 247, 625, 670, 741, 861, 898, 909
DdeI	CTNAG	3 cut(s)	540, 591, 927
DpnI	GATC	3 cut(s)	33, 439, 946
DpnII	GATC	3 cut(s)	31, 437, 944
DriI	GACNNNNNGTC	1 cut(s)	529
EaeI	YGGCCR	2 cut(s)	310, 418
EagI	CGGCCG	1 cut(s)	418
Eam1105I	GACNNNNNGTC	1 cut(s)	529
EciI	GGCGGA	2 cut(s)	259, 390
EclXI	CGGCCG	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	878
Eco52I	CGGCCG	1 cut(s)	418
Eco57I	CTGAAG	2 cut(s)	189, 1002
EcoO109I	RGGNCCY	2 cut(s)	332, 878
EcoT14I	CCWWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	8 cut(s)	155, 250, 628, 673, 744, 864, 901, 912
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	8 cut(s)	151, 246, 624, 669, 740, 860, 897, 908
FauNDI	CATATG	1 cut(s)	679
FokI	GGATG	7 cut(s)	463, 584, 602, 686, 696, 782, 977
FspBI	CTAG	2 cut(s)	521, 846
GlaI	GCGC	2 cut(s)	99, 596
GsaI	CCCAGC	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	4 cut(s)	312, 333, 420, 447
HapII	CCGG	4 cut(s)	309, 433, 448, 921
HgaI	GACGC	2 cut(s)	471, 722
HhaI	GCGC	2 cut(s)	100, 597
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	8 cut(s)	155, 250, 628, 673, 744, 864, 901, 912
Hin6I	GCGC	2 cut(s)	98, 595
HinP1I	GCGC	2 cut(s)	98, 595
HinfI	GANTC	4 cut(s)	356, 390, 524, 970
HpaII	CCGG	4 cut(s)	309, 433, 448, 921
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	3 cut(s)	353, 367, 457
Hpy188III	TCNNGA	4 cut(s)	59, 152, 521, 691
Hpy8I	GTNNAC	1 cut(s)	546
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	3 cut(s)	111, 644, 760
HpyCH4III	ACNGT	2 cut(s)	188, 839
HpyCH4V	TGCA	8 cut(s)	124, 566, 628, 653, 677, 710, 912, 989
HpyF10VI	GCNNNNNNNGC	6 cut(s)	217, 220, 223, 226, 330, 563
HpyF3I	CTNAG	3 cut(s)	540, 591, 927
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	8 cut(s)	155, 250, 628, 673, 744, 864, 901, 912
HspAI	GCGC	2 cut(s)	98, 595
Kzo9I	GATC	3 cut(s)	31, 437, 944
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	9 cut(s)	223, 226, 229, 232, 235, 238, 694, 924, 973
LweI	GCATC	4 cut(s)	606, 624, 664, 674
MaeI	CTAG	2 cut(s)	521, 846
MaeIII	GTNAC	2 cut(s)	190, 304
MalI	GATC	3 cut(s)	33, 439, 946
MboI	GATC	3 cut(s)	31, 437, 944
MboII	GAAGA	8 cut(s)	29, 32, 35, 182, 217, 334, 577, 950
MflI	RGATCY	1 cut(s)	944
MluCI	AATT	5 cut(s)	181, 559, 713, 761, 1041
MlyI	GAGTC	3 cut(s)	350, 384, 518
MmeI	TCCRAC	4 cut(s)	116, 384, 390, 480
Mph1103I	ATGCAT	1 cut(s)	679
MseI	TTAA	2 cut(s)	108, 774
MslI	CAYNNNNRTG	1 cut(s)	682
MspI	CCGG	4 cut(s)	309, 433, 448, 921
MspR9I	CCNGG	1 cut(s)	921
MwoI	GCNNNNNNNGC	6 cut(s)	217, 220, 223, 226, 330, 563
NciI	CCSGG	1 cut(s)	921
NcoI	CCATGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	3 cut(s)	31, 437, 944
NlaIII	CATG	8 cut(s)	155, 250, 628, 673, 744, 864, 901, 912
NlaIV	GGNNCC	3 cut(s)	334, 513, 946
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	190, 304
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	3 cut(s)	744, 864, 912
PagI	TCATGA	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	970
PleI	GAGTC	3 cut(s)	350, 384, 518
PpsI	GAGTC	3 cut(s)	350, 384, 518
PpuMI	RGGWCCY	1 cut(s)	878
Psp5II	RGGWCCY	1 cut(s)	878
PspFI	CCCAGC	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	334, 513, 946
PspPI	GGNCC	2 cut(s)	332, 878
PspPPI	RGGWCCY	1 cut(s)	878
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	1 cut(s)	944
RseI	CAYNNNNRTG	1 cut(s)	682
SaqAI	TTAA	2 cut(s)	108, 774
Sau3AI	GATC	3 cut(s)	31, 437, 944
Sau96I	GGNCC	2 cut(s)	332, 878
SchI	GAGTC	3 cut(s)	350, 384, 518
ScrFI	CCNGG	1 cut(s)	921
SfaNI	GCATC	4 cut(s)	606, 624, 664, 674
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	878
SmiMI	CAYNNNNRTG	1 cut(s)	682
SpeI	ACTAGT	1 cut(s)	845
Sse9I	AATT	5 cut(s)	181, 559, 713, 761, 1041
SsiI	CCGC	5 cut(s)	270, 375, 421, 704, 1037
SspMI	CTAG	2 cut(s)	521, 846
StyD4I	CCNGG	1 cut(s)	919
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	188, 839
TaqI	TCGA	2 cut(s)	474, 692
TasI	AATT	5 cut(s)	181, 559, 713, 761, 1041
TauI	GCSGC	2 cut(s)	423, 707
TfiI	GAWTC	1 cut(s)	970
Tru1I	TTAA	2 cut(s)	108, 774
Tru9I	TTAA	2 cut(s)	108, 774
TscAI	CASTG	1 cut(s)	985
TseFI	GTSAC	2 cut(s)	190, 304
TseI	GCWGC	9 cut(s)	211, 214, 217, 220, 223, 226, 707, 912, 986
Tsp45I	GTSAC	2 cut(s)	190, 304
TspDTI	ATGAA	6 cut(s)	17, 140, 168, 192, 626, 1052
TspGWI	ACGGA	4 cut(s)	292, 474, 888, 1037
TspRI	CASTG	1 cut(s)	985
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	1 cut(s)	559
XbaI	TCTAGA	1 cut(s)	520
XceI	RCATGY	3 cut(s)	744, 864, 912
XspI	CTAG	2 cut(s)	521, 846
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.