AT1G63480

DNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005616
Physical Location & Seq
Reverse (-)
23539557 .. 23542233
2677 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63480.2

Sequence Viewer

Length: 1086 bp
ATGGACGGAAGAGAAGCAATGGCATTTCCAGGCTCGCATTCTCAGTACTATCTTCAAAGAGGAGCCTTTACTAATCTCGCACCTTCCCAAGTCGCGAGTGGGCTTCACGCGCCGCCGCCACATACGGGATTGAGGCCAATGTCTAACCCTAACATTCATCACCCTCAGGCTAACAATCCAGGACCTCCTTTCTCGGATTTTGGACACACCATTCACATGGGAGTGGTCTCCTCTGCTTCTGATGCTGATGTGCAACCGCCACCGCCACCGCCACCACCAGAGGAACCGATGGTTAAGAGGAAACGTGGACGGCCAAGAAAGTATGGAGAACCGATGGTTAGTAATAAGTCTAGGGACTCTTCTCCAATGTCTGATCCTAATGAACCTAAACGGGCCAGAGGTCGACCTCCTGGAACTGGAAGGAAGCAACGCTTGGCTAATCTTGGTGAGTGGATGAATACTTCAGCTGGACTTGCTTTTGCACCTCATGTGATCAGCATTGGAGCAGGAGAAGACATTGCTGCGAAAGTTTTGTCATTTTCACAACAAAGACCTCGGGCTCTTTGTATAATGTCAGGCACTGGAACCATTTCTTCAGTCACTCTGTGCAAACCCGGTTCAACCGATCGTCACTTAACATACGAGGGACCTTTTGAGATTATAAGTTTTGGTGGATCTTATTTGGTGAATGAAGAAGGTGGATCCAGAAGTCGAACAGGCGGATTGAGTGTCTCTCTTTCTCGTCCCGATGGTAGTATTATTGCCGGTGGAGTTGACATGCTTATCGCAGCCAACCTTGTTCAGGTGGTGGCATGTAGTTTTGTATACGGAGCAAGGGCAAAGACTCATAATAACAATAACAAGACCATCAGACAAGAAAAGGAACCAAATGAAGAGGACAACAATAGTGAAATGGAGACCACACCGGGTAGTGCAGCTGAACCAGCAGCATCTGCGGGTCAGCAGACGCCACAGAACTTCTCTTCTCAGGGAATAAGGGGGTGGCCCGGTTCAGGCTCAGGCTCTGGCAGATCACTTGACATTTGCAGAAACCCACTCACTGATTTTGATTTGACTCGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0043621
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

361

Amino Acids

38.31

Weight (kDa)

8.9

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 162 - 274 1.9e-20 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 662
AccI GTMKAC 2 cut(s) 403, 825
AccII CGCG 2 cut(s) 95, 110
AciI CCGC 7 cut(s) 113, 116, 257, 263, 269, 720, 956
AclWI GGATC 4 cut(s) 368, 682, 696, 709
AcoI YGGCCR 1 cut(s) 311
AcuI CTGAAG 2 cut(s) 447, 579
AcyI GRCGYC 1 cut(s) 968
AdeI CACNNNGTG 1 cut(s) 606
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 4 cut(s) 125, 416, 802, 1013
AgsI TTSAA 2 cut(s) 56, 621
AjnI CCWGG 3 cut(s) 28, 178, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 2 cut(s) 467, 938
AluI AGCT 2 cut(s) 467, 938
Alw26I GTCTC 3 cut(s) 232, 736, 911
AlwI GGATC 4 cut(s) 368, 682, 696, 709
AlwNI CAGNNNCTG 3 cut(s) 581, 953, 1025
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 4 cut(s) 134, 311, 393, 1004
ApeKI GCWGC 4 cut(s) 521, 788, 935, 947
ArsI GACNNNNNNTTYG 2 cut(s) 518, 550
Asp700I GAANNNNTTC 1 cut(s) 589
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 4 cut(s) 182, 393, 647, 1005
AsuC2I CCSGG 3 cut(s) 615, 927, 1008
AsuHPI GGTGA 3 cut(s) 152, 458, 697
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 2 cut(s) 182, 647
AxyI CCTNAGG 1 cut(s) 165
BamHI GGATCC 1 cut(s) 701
BanII GRGCYC 1 cut(s) 562
BauI CACGAG 1 cut(s) 1077
BbsI GAAGAC 1 cut(s) 519
BbvI GCAGC 4 cut(s) 508, 800, 947, 959
BccI CCATC 4 cut(s) 283, 328, 743, 875
BceAI ACGGC 1 cut(s) 326
BciT130I CCWGG 3 cut(s) 30, 180, 411
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 3 cut(s) 615, 927, 1008
BcoDI GTCTC 3 cut(s) 232, 736, 911
BfaI CTAG 1 cut(s) 351
BisI GCNGC 6 cut(s) 113, 116, 522, 789, 936, 948
BlsI GCNGC 6 cut(s) 114, 117, 523, 790, 937, 949
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 6 cut(s) 30, 180, 411, 615, 927, 1008
Bme18I GGWCC 2 cut(s) 182, 647
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 4 cut(s) 182, 393, 647, 1005
BmiI GGNNCC 6 cut(s) 64, 285, 586, 648, 703, 885
BmrFI CCNGG 6 cut(s) 30, 180, 411, 615, 927, 1008
BmsI GCATC 2 cut(s) 232, 959
BpiI GAAGAC 1 cut(s) 519
BplI GAGNNNNNCTC 2 cut(s) 718, 750
Bpu10I CCTNAGC 1 cut(s) 1018
BpuMI CCSGG 3 cut(s) 615, 927, 1008
BsaHI GRCGYC 1 cut(s) 968
BsaI GGTCTC 2 cut(s) 232, 911
BsaJI CCNNGG 1 cut(s) 554
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 416, 802, 1013
Bse118I RCCGGY 1 cut(s) 764
Bse1I ACTGG 2 cut(s) 421, 586
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 2 cut(s) 24, 516
BseBI CCWGG 3 cut(s) 30, 180, 411
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 1 cut(s) 459
BseLI CCNNNNNNNGG 4 cut(s) 125, 416, 802, 1013
BseMI GCAATG 2 cut(s) 24, 516
BseMII CTCAG 4 cut(s) 56, 179, 1001, 1032
BseNI ACTGG 2 cut(s) 421, 586
BseRI GAGGAG 2 cut(s) 75, 220
BseXI GCAGC 4 cut(s) 508, 800, 947, 959
BsgI GTGCAG 1 cut(s) 954
Bsh1236I CGCG 2 cut(s) 95, 110
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 4 cut(s) 136, 313, 395, 1006
BsiEI CGRYCG 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 4 cut(s) 615, 765, 926, 1008
BslFI GGGAC 3 cut(s) 368, 660, 729
BslI CCNNNNNNNGG 4 cut(s) 125, 416, 802, 1013
BsmAI GTCTC 3 cut(s) 232, 736, 911
BsmFI GGGAC 3 cut(s) 368, 660, 729
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 4 cut(s) 136, 313, 395, 1006
Bso31I GGTCTC 2 cut(s) 232, 911
BsoBI CYCGRG 1 cut(s) 555
Bsp1286I GDGCHC 1 cut(s) 562
Bsp143I GATC 6 cut(s) 373, 492, 625, 674, 701, 1031
Bsp68I TCGCGA 1 cut(s) 95
BspACI CCGC 7 cut(s) 113, 116, 257, 263, 269, 720, 956
BspANI GGCC 4 cut(s) 136, 313, 395, 1006
BspCNI CTCAG 4 cut(s) 55, 178, 1000, 1031
BspFNI CGCG 2 cut(s) 95, 110
BspLI GGNNCC 6 cut(s) 64, 285, 586, 648, 703, 885
BspPI GGATC 4 cut(s) 368, 682, 696, 709
BspTNI GGTCTC 2 cut(s) 232, 911
BsrDI GCAATG 2 cut(s) 24, 516
BsrFI RCCGGY 1 cut(s) 764
BsrI ACTGG 2 cut(s) 421, 586
BssAI RCCGGY 1 cut(s) 764
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 6 cut(s) 373, 492, 625, 674, 701, 1031
BssNAI GTATAC 1 cut(s) 826
BssNI GRCGYC 1 cut(s) 968
BssSI CACGAG 1 cut(s) 1077
Bst1107I GTATAC 1 cut(s) 826
Bst2BI CACGAG 1 cut(s) 1077
Bst2UI CCWGG 3 cut(s) 30, 180, 411
Bst6I CTCTTC 4 cut(s) 4, 364, 888, 988
BstACI GRCGYC 1 cut(s) 968
BstAPI GCANNNNNTGC 1 cut(s) 953
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 4 cut(s) 42, 165, 987, 1018
BstENI CCTNNNNNAGG 1 cut(s) 800
BstF5I GGATG 1 cut(s) 459
BstFNI CGCG 2 cut(s) 95, 110
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 6 cut(s) 376, 495, 628, 677, 704, 1034
BstMAI GTCTC 3 cut(s) 232, 736, 911
BstMBI GATC 6 cut(s) 373, 492, 625, 674, 701, 1031
BstMCI CGRYCG 1 cut(s) 628
BstMWI GCNNNNNNNGC 5 cut(s) 109, 242, 473, 944, 953
BstNI CCWGG 3 cut(s) 30, 180, 411
BstNSI RCATGY 2 cut(s) 781, 816
BstSCI CCNGG 6 cut(s) 28, 178, 409, 613, 925, 1006
BstUI CGCG 2 cut(s) 95, 110
BstV1I GCAGC 4 cut(s) 508, 800, 947, 959
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 2 cut(s) 674, 701
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 2 cut(s) 674, 701
BstZ17I GTATAC 1 cut(s) 826
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 4 cut(s) 136, 313, 395, 1006
BtsCI GGATG 1 cut(s) 459
BtsIMutI CAGTG 2 cut(s) 579, 1059
BtuMI TCGCGA 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 35
CaiI CAGNNNCTG 3 cut(s) 581, 953, 1025
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 764
Cfr13I GGNCC 4 cut(s) 182, 393, 647, 1005
CseI GACGC 1 cut(s) 976
Csp6I GTAC 1 cut(s) 46
CviAII CATG 4 cut(s) 217, 488, 778, 813
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 4 cut(s) 42, 165, 987, 1018
DpnI GATC 6 cut(s) 375, 494, 627, 676, 703, 1033
DpnII GATC 6 cut(s) 373, 492, 625, 674, 701, 1031
DraIII CACNNNGTG 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 311
Eam1104I CTCTTC 4 cut(s) 4, 364, 888, 988
EarI CTCTTC 4 cut(s) 4, 364, 888, 988
EciI GGCGGA 1 cut(s) 735
Eco24I GRGCYC 1 cut(s) 562
Eco31I GGTCTC 2 cut(s) 232, 911
Eco47I GGWCC 2 cut(s) 182, 647
Eco57I CTGAAG 2 cut(s) 447, 579
Eco81I CCTNAGG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 555
EcoNI CCTNNNNNAGG 1 cut(s) 800
EcoO109I RGGNCCY 2 cut(s) 182, 647
EcoRII CCWGG 3 cut(s) 28, 178, 409
EcoT38I GRGCYC 1 cut(s) 562
FaeI CATG 4 cut(s) 220, 491, 781, 816
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FaqI GGGAC 3 cut(s) 368, 660, 729
FatI CATG 4 cut(s) 216, 487, 777, 812
FauI CCCGC 1 cut(s) 949
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 2 cut(s) 403, 825
Fnu4HI GCNGC 6 cut(s) 113, 116, 522, 789, 936, 948
FokI GGATG 1 cut(s) 466
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 6 cut(s) 113, 116, 522, 789, 936, 948
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 111
GluI GCNGC 6 cut(s) 113, 116, 522, 789, 936, 948
HaeIII GGCC 4 cut(s) 136, 313, 395, 1006
HapII CCGG 4 cut(s) 615, 765, 926, 1008
HgaI GACGC 1 cut(s) 976
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 968
Hin1II CATG 4 cut(s) 220, 491, 781, 816
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 2 cut(s) 404, 775
HindII GTYRAC 2 cut(s) 404, 775
HinfI GANTC 3 cut(s) 356, 844, 1075
HpaII CCGG 4 cut(s) 615, 765, 926, 1008
HphI GGTGA 3 cut(s) 152, 458, 697
Hpy166II GTNNAC 4 cut(s) 308, 404, 775, 826
Hpy188I TCNGA 4 cut(s) 196, 241, 373, 872
Hpy188III TCNNGA 3 cut(s) 94, 705, 746
Hpy8I GTNNAC 4 cut(s) 308, 404, 775, 826
HpyAV CCTTC 3 cut(s) 93, 414, 689
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 5 cut(s) 253, 482, 609, 935, 1047
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 242, 473, 944, 953
HpyF3I CTNAG 4 cut(s) 42, 165, 987, 1018
HpySE526I ACGT 1 cut(s) 304
Hsp92I GRCGYC 1 cut(s) 968
Hsp92II CATG 4 cut(s) 220, 491, 781, 816
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 6 cut(s) 373, 492, 625, 674, 701, 1031
LmnI GCTCC 3 cut(s) 62, 503, 830
Lsp1109I GCAGC 4 cut(s) 508, 800, 947, 959
LweI GCATC 2 cut(s) 232, 959
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 2 cut(s) 598, 629
MalI GATC 6 cut(s) 375, 494, 627, 676, 703, 1033
MboI GATC 6 cut(s) 373, 492, 625, 674, 701, 1031
MboII GAAGA 8 cut(s) 21, 44, 351, 524, 585, 704, 905, 975
MflI RGATCY 2 cut(s) 674, 701
MhlI GDGCHC 1 cut(s) 562
MlyI GAGTC 3 cut(s) 350, 838, 1069
MroXI GAANNNNTTC 1 cut(s) 589
MseI TTAA 2 cut(s) 294, 635
MslI CAYNNNNRTG 2 cut(s) 215, 221
MspA1I CMGCKG 2 cut(s) 467, 938
MspI CCGG 4 cut(s) 615, 765, 926, 1008
MspR9I CCNGG 6 cut(s) 30, 180, 411, 615, 927, 1008
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 3 cut(s) 30, 180, 411
MvnI CGCG 2 cut(s) 95, 110
MwoI GCNNNNNNNGC 5 cut(s) 109, 242, 473, 944, 953
NciI CCSGG 3 cut(s) 615, 927, 1008
NdeII GATC 6 cut(s) 373, 492, 625, 674, 701, 1031
NlaIII CATG 4 cut(s) 220, 491, 781, 816
NlaIV GGNNCC 6 cut(s) 64, 285, 586, 648, 703, 885
NmuCI GTSAC 2 cut(s) 598, 629
NruI TCGCGA 1 cut(s) 95
NspI RCATGY 2 cut(s) 781, 816
PctI GAATGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 589
PfoI TCCNGGA 2 cut(s) 178, 409
PkrI GCNGC 6 cut(s) 114, 117, 523, 790, 937, 949
Ple19I CGATCG 1 cut(s) 628
PleI GAGTC 3 cut(s) 350, 838, 1069
PpsI GAGTC 3 cut(s) 350, 838, 1069
PpuMI RGGWCCY 2 cut(s) 182, 647
PsiI TTATAA 1 cut(s) 662
Psp5II RGGWCCY 2 cut(s) 182, 647
Psp6I CCWGG 3 cut(s) 28, 178, 409
PspGI CCWGG 3 cut(s) 28, 178, 409
PspN4I GGNNCC 6 cut(s) 64, 285, 586, 648, 703, 885
PspPI GGNCC 4 cut(s) 182, 393, 647, 1005
PspPPI RGGWCCY 2 cut(s) 182, 647
PstNI CAGNNNCTG 3 cut(s) 581, 953, 1025
PsuI RGATCY 2 cut(s) 674, 701
PvuI CGATCG 1 cut(s) 628
PvuII CAGCTG 2 cut(s) 467, 938
RruI TCGCGA 1 cut(s) 95
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
RseI CAYNNNNRTG 2 cut(s) 215, 221
SalI GTCGAC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 294, 635
SatI GCNGC 6 cut(s) 113, 116, 522, 789, 936, 948
Sau3AI GATC 6 cut(s) 373, 492, 625, 674, 701, 1031
Sau96I GGNCC 4 cut(s) 182, 393, 647, 1005
ScaI AGTACT 1 cut(s) 47
SchI GAGTC 3 cut(s) 350, 838, 1069
ScrFI CCNGG 6 cut(s) 30, 180, 411, 615, 927, 1008
SduI GDGCHC 1 cut(s) 562
SfaNI GCATC 2 cut(s) 232, 959
SinI GGWCC 2 cut(s) 182, 647
SmiMI CAYNNNNRTG 2 cut(s) 215, 221
SsiI CCGC 7 cut(s) 113, 116, 257, 263, 269, 720, 956
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 6 cut(s) 28, 178, 409, 613, 925, 1006
TaiI ACGT 1 cut(s) 307
TaqI TCGA 2 cut(s) 403, 712
TatI WGTACW 1 cut(s) 45
TauI GCSGC 2 cut(s) 115, 118
Tru1I TTAA 2 cut(s) 294, 635
Tru9I TTAA 2 cut(s) 294, 635
TscAI CASTG 2 cut(s) 586, 1066
TseFI GTSAC 2 cut(s) 598, 629
TseI GCWGC 4 cut(s) 521, 788, 935, 947
Tsp45I GTSAC 2 cut(s) 598, 629
TspDTI ATGAA 5 cut(s) 146, 396, 470, 705, 906
TspGWI ACGGA 2 cut(s) 21, 843
TspRI CASTG 2 cut(s) 586, 1066
VpaK11BI GGWCC 2 cut(s) 182, 647
XagI CCTNNNNNAGG 1 cut(s) 800
XceI RCATGY 2 cut(s) 781, 816
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XmiI GTMKAC 2 cut(s) 403, 825
XmnI GAANNNNTTC 1 cut(s) 589
XspI CTAG 1 cut(s) 351
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.