Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016104.1

Orthogroup ID

OG0005616

Physical Location & Seq

Genomic Coordinates Reverse (-)

15148 .. 19418

Gene Structure 4271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016104.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggccatctctggtgctcaagcttcatactacatccataggggaggccatggtgggtcttcgcctggatcacagattgctgggctgcatgcaccccctgggttcaggcccaacaacactgcctttcaacaagctcagtctaatgtgagggcctcctcagcattctcagtagagccttcttcgagacccaattaccctcatggcattagcatcaatgtttctcccggaggagctccttcttctggtgagcctgtaaagaagaaacgagggaggccccggaagtatgggcctggccctgctcctggccctggttcggctcctgatgccccggtttctctggcattgtctccaatgtcttcaactcctaatcctactccaggatcaacctcaccgactccgaaacgaaacagaggaaggccacctgggactggcaggaaacaacaattggctaatcttggggaatggatgaacagttcggctggacaggcttttgcaccccatgttatcaccattgaagctggagaggacattgcagcaaaattattgttattttcacaacagaggccaagggcactatgcatcttgtcaggaaatggaacagtatcttcagtagcactgcgtcagcctgcatcaactggtgtcagtgtcacatatgagggtcgtttccagatattatgcttgtcaggttcttacctggttgctgaggatggtggcccccgcgatcgaacaggggggataagcgtttccctttctagttctgatggtcatgtcattggtggtgctgtggctatgcttattgcagcaactccagtgcagattgtgctttgcagttttgtatatggtagctccaacaagatcaagagcaagccagtggctgaccccaataatgggcagagttctgagcctcagcacagtgagaaattaccttcaccggctacagctccatctactcaaaattatgctccatccacagcaggcatttggcctggggggcggctagttgatgcgagaaatgctcacaccggtattgacttgactcgcggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0043621

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

348

Amino Acids

35.62

Weight (kDa)

10.05

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63470 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480
fragaria_vesca	FvH4_5g02200
malus_domestica	MD06G1081700.v1.1
prunus_persica	Prupe.5G098800_v2.0.a1
pyrus_communis	pycom06g07860 pycom14g09940
rosa_chinensis	RchiOBHm_Chr7g0197931
rosa_laevigata	RLG00000003902
rosa_multiflora	Rmu_co8232119.1_g000001 Rmu_co8341275.1_g000001 Rmu_sc0001082.1_g000013 Rmu_sc0016104.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258100
rosa_rugosa	Rorug07G0044500 Rorug07G0044500 Rorug07G0044600
rosa_samantha	Rh7AG168200 Rh7BG171000 Rh7CG177600 Rh7DG170200
rosa_wichuraiana	Rw7G014670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	720, 1041
AciI	CCGC	3 cut(s)	718, 994, 1041
AclWI	GGATC	2 cut(s)	76, 388
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	591
AfiI	CCNNNNNNNGG	8 cut(s)	242, 302, 308, 313, 377, 428, 887, 888
AgeI	ACCGGT	1 cut(s)	1022
AgsI	TTSAA	3 cut(s)	128, 360, 515
AjnI	CCWGG	9 cut(s)	64, 97, 289, 301, 307, 376, 421, 693, 985
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AloI	GAACNNNNNNTCC	2 cut(s)	457, 489
AluBI	AGCT	6 cut(s)	23, 134, 233, 518, 846, 941
AluI	AGCT	6 cut(s)	23, 134, 233, 518, 846, 941
Alw21I	GWGCWC	2 cut(s)	19, 235
Alw26I	GTCTC	2 cut(s)	178, 351
AlwI	GGATC	2 cut(s)	76, 388
AlwNI	CAGNNNCTG	1 cut(s)	875
ApeKI	GCWGC	3 cut(s)	85, 533, 800
AsiGI	ACCGGT	1 cut(s)	1022
AspS9I	GGNCC	7 cut(s)	108, 150, 273, 287, 293, 305, 713
AsuC2I	CCSGG	3 cut(s)	225, 277, 329
AsuHPI	GGTGA	4 cut(s)	257, 381, 499, 921
BaeGI	GKGCMC	1 cut(s)	574
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	235
BbsI	GAAGAC	2 cut(s)	51, 348
Bbv12I	GWGCWC	2 cut(s)	19, 235
BbvCI	CCTCAGC	3 cut(s)	157, 702, 906
BbvI	GCAGC	3 cut(s)	72, 545, 812
BccI	CCATC	5 cut(s)	14, 701, 755, 952, 973
BciT130I	CCWGG	9 cut(s)	66, 99, 291, 303, 309, 378, 423, 695, 987
BcnI	CCSGG	3 cut(s)	225, 277, 329
BcoDI	GTCTC	2 cut(s)	178, 351
BfaI	CTAG	2 cut(s)	753, 998
BfmI	CTRYAG	1 cut(s)	936
BglI	GCCNNNNNGGC	1 cut(s)	991
BisI	GCNGC	4 cut(s)	86, 534, 801, 995
BlsI	GCNGC	4 cut(s)	87, 535, 802, 996
BmgT120I	GGNCC	7 cut(s)	108, 150, 273, 287, 293, 305, 713
BmiI	GGNNCC	3 cut(s)	275, 318, 715
BmsI	GCATC	5 cut(s)	219, 313, 588, 638, 994
BpiI	GAAGAC	2 cut(s)	51, 348
BplI	GAGNNNNNCTC	2 cut(s)	1000, 1032
BpmI	CTGGAG	3 cut(s)	360, 540, 792
Bpu10I	CCTNAGC	3 cut(s)	157, 702, 906
BpuMI	CCSGG	3 cut(s)	225, 277, 329
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	9 cut(s)	49, 97, 98, 275, 307, 327, 422, 566, 986
BsaWI	WCCGGW	1 cut(s)	1022
Bsc4I	CCNNNNNNNGG	8 cut(s)	242, 302, 308, 313, 377, 428, 887, 888
Bse118I	RCCGGY	2 cut(s)	931, 1022
Bse1I	ACTGG	4 cut(s)	433, 640, 809, 869
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	9 cut(s)	66, 99, 291, 303, 309, 378, 423, 695, 987
BseDI	CCNNGG	9 cut(s)	49, 97, 98, 275, 307, 327, 422, 566, 986
BseGI	GGATG	4 cut(s)	33, 471, 712, 965
BseLI	CCNNNNNNNGG	8 cut(s)	242, 302, 308, 313, 377, 428, 887, 888
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	6 cut(s)	149, 171, 180, 693, 891, 920
BseNI	ACTGG	4 cut(s)	433, 640, 809, 869
BseRI	GAGGAG	2 cut(s)	145, 243
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	3 cut(s)	72, 545, 812
BseYI	CCCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	833
Bsh1236I	CGCG	2 cut(s)	720, 1041
Bsh1285I	CGRYCG	1 cut(s)	724
BshTI	ACCGGT	1 cut(s)	1022
BsiEI	CGRYCG	1 cut(s)	724
BsiHKAI	GWGCWC	2 cut(s)	19, 235
BsiSI	CCGG	5 cut(s)	225, 277, 329, 932, 1023
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	8 cut(s)	242, 302, 308, 313, 377, 428, 887, 888
BsmAI	GTCTC	2 cut(s)	178, 351
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	3 cut(s)	19, 235, 574
Bsp143I	GATC	4 cut(s)	68, 380, 721, 855
Bsp19I	CCATGG	1 cut(s)	49
BspACI	CCGC	3 cut(s)	718, 994, 1041
BspCNI	CTCAG	6 cut(s)	148, 170, 179, 694, 892, 919
BspFNI	CGCG	2 cut(s)	720, 1041
BspLI	GGNNCC	3 cut(s)	275, 318, 715
BspPI	GGATC	2 cut(s)	76, 388
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	2 cut(s)	931, 1022
BsrI	ACTGG	4 cut(s)	433, 640, 809, 869
BssAI	RCCGGY	2 cut(s)	931, 1022
BssECI	CCNNGG	9 cut(s)	49, 97, 98, 275, 307, 327, 422, 566, 986
BssMI	GATC	4 cut(s)	68, 380, 721, 855
BssT1I	CCWWGG	2 cut(s)	49, 566
Bst2UI	CCWGG	9 cut(s)	66, 99, 291, 303, 309, 378, 423, 695, 987
Bst4CI	ACNGT	3 cut(s)	473, 601, 914
BstAPI	GCANNNNNTGC	1 cut(s)	820
BstC8I	GCNNGC	4 cut(s)	90, 627, 866, 976
BstDEI	CTNAG	6 cut(s)	135, 157, 166, 702, 900, 906
BstDSI	CCRYGG	1 cut(s)	49
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	4 cut(s)	33, 471, 712, 965
BstFNI	CGCG	2 cut(s)	720, 1041
BstKTI	GATC	4 cut(s)	71, 383, 724, 858
BstMAI	GTCTC	2 cut(s)	178, 351
BstMBI	GATC	4 cut(s)	68, 380, 721, 855
BstMCI	CGRYCG	1 cut(s)	724
BstMWI	GCNNNNNNNGC	6 cut(s)	158, 323, 485, 820, 991, 1013
BstNI	CCWGG	9 cut(s)	66, 99, 291, 303, 309, 378, 423, 695, 987
BstNSI	RCATGY	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	936
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	2 cut(s)	720, 1041
BstV1I	GCAGC	3 cut(s)	72, 545, 812
BstV2I	GAAGAC	2 cut(s)	51, 348
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	4 cut(s)	33, 471, 712, 965
BtsI	GCAGTG	2 cut(s)	117, 614
BtsIMutI	CAGTG	6 cut(s)	117, 614, 649, 816, 876, 919
Cac8I	GCNNGC	4 cut(s)	90, 627, 866, 976
CaiI	CAGNNNCTG	1 cut(s)	875
Cfr10I	RCCGGY	2 cut(s)	931, 1022
Cfr13I	GGNCC	7 cut(s)	108, 150, 273, 287, 293, 305, 713
CseI	GACGC	1 cut(s)	608
CsiI	ACCWGGT	1 cut(s)	693
CspAI	ACCGGT	1 cut(s)	1022
CviAII	CATG	5 cut(s)	50, 89, 200, 500, 767
DdeI	CTNAG	6 cut(s)	135, 157, 166, 702, 900, 906
DpnI	GATC	4 cut(s)	70, 382, 723, 857
DpnII	GATC	4 cut(s)	68, 380, 721, 855
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	233
Eco130I	CCWWGG	2 cut(s)	49, 566
Eco24I	GRGCYC	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	591
EcoICRI	GAGCTC	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	2 cut(s)	150, 273
EcoRII	CCWGG	9 cut(s)	64, 97, 289, 301, 307, 376, 421, 693, 985
EcoT14I	CCWWGG	2 cut(s)	49, 566
EcoT22I	ATGCAT	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	2 cut(s)	49, 566
FaeI	CATG	5 cut(s)	53, 92, 203, 503, 770
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	5 cut(s)	49, 88, 199, 499, 766
FauI	CCCGC	1 cut(s)	725
FauNDI	CATATG	1 cut(s)	652
Fnu4HI	GCNGC	4 cut(s)	86, 534, 801, 995
FokI	GGATG	4 cut(s)	20, 478, 719, 952
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	4 cut(s)	86, 534, 801, 995
FspBI	CTAG	2 cut(s)	753, 998
GluI	GCNGC	4 cut(s)	86, 534, 801, 995
GsaI	CCCAGC	1 cut(s)	84
GsuI	CTGGAG	3 cut(s)	360, 540, 792
HapII	CCGG	5 cut(s)	225, 277, 329, 932, 1023
HgaI	GACGC	1 cut(s)	608
Hin1II	CATG	5 cut(s)	53, 92, 203, 503, 770
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	2 cut(s)	394, 1036
HpaII	CCGG	5 cut(s)	225, 277, 329, 932, 1023
HphI	GGTGA	4 cut(s)	257, 381, 499, 921
Hpy188I	TCNGA	3 cut(s)	399, 760, 901
Hpy188III	TCNNGA	5 cut(s)	183, 320, 588, 667, 859
HpyAV	CCTTC	4 cut(s)	186, 246, 408, 936
HpyCH4III	ACNGT	3 cut(s)	473, 601, 914
HpyCH4V	TGCA	9 cut(s)	88, 92, 494, 533, 579, 629, 800, 814, 828
HpyF10VI	GCNNNNNNNGC	6 cut(s)	158, 323, 485, 820, 991, 1013
HpyF3I	CTNAG	6 cut(s)	135, 157, 166, 702, 900, 906
Hsp92II	CATG	5 cut(s)	53, 92, 203, 503, 770
Kzo9I	GATC	4 cut(s)	68, 380, 721, 855
LmnI	GCTCC	7 cut(s)	230, 238, 304, 322, 851, 946, 967
Lsp1109I	GCAGC	3 cut(s)	72, 545, 812
LweI	GCATC	5 cut(s)	219, 313, 588, 638, 994
MabI	ACCWGGT	1 cut(s)	693
MaeI	CTAG	2 cut(s)	753, 998
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	4 cut(s)	70, 382, 723, 857
MboI	GATC	4 cut(s)	68, 380, 721, 855
MboII	GAAGA	6 cut(s)	51, 171, 231, 271, 348, 597
MfeI	CAATTG	1 cut(s)	443
MhlI	GDGCHC	3 cut(s)	19, 235, 574
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	190, 443, 539, 920, 955
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	388, 1030
MmeI	TCCRAC	1 cut(s)	873
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	225, 277, 329, 932, 1023
MunI	CAATTG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	161
MvaI	CCWGG	9 cut(s)	66, 99, 291, 303, 309, 378, 423, 695, 987
MvnI	CGCG	2 cut(s)	720, 1041
MwoI	GCNNNNNNNGC	6 cut(s)	158, 323, 485, 820, 991, 1013
NciI	CCSGG	3 cut(s)	225, 277, 329
NcoI	CCATGG	1 cut(s)	49
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	4 cut(s)	68, 380, 721, 855
NlaIII	CATG	5 cut(s)	53, 92, 203, 503, 770
NlaIV	GGNNCC	3 cut(s)	275, 318, 715
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	581
NspI	RCATGY	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	92
PasI	CCCWGGG	1 cut(s)	98
PctI	GAATGC	1 cut(s)	161
PfoI	TCCNGGA	2 cut(s)	223, 376
PinAI	ACCGGT	1 cut(s)	1022
PkrI	GCNGC	4 cut(s)	87, 535, 802, 996
Ple19I	CGATCG	1 cut(s)	724
PleI	GAGTC	2 cut(s)	388, 1030
PpsI	GAGTC	2 cut(s)	388, 1030
Psp124BI	GAGCTC	1 cut(s)	235
Psp6I	CCWGG	9 cut(s)	64, 97, 289, 301, 307, 376, 421, 693, 985
PspFI	CCCAGC	1 cut(s)	80
PspGI	CCWGG	9 cut(s)	64, 97, 289, 301, 307, 376, 421, 693, 985
PspN4I	GGNNCC	3 cut(s)	275, 318, 715
PspPI	GGNCC	7 cut(s)	108, 150, 273, 287, 293, 305, 713
PstNI	CAGNNNCTG	1 cut(s)	875
PvuI	CGATCG	1 cut(s)	724
SacI	GAGCTC	1 cut(s)	235
SatI	GCNGC	4 cut(s)	86, 534, 801, 995
Sau3AI	GATC	4 cut(s)	68, 380, 721, 855
Sau96I	GGNCC	7 cut(s)	108, 150, 273, 287, 293, 305, 713
SchI	GAGTC	2 cut(s)	388, 1030
SduI	GDGCHC	3 cut(s)	19, 235, 574
SexAI	ACCWGGT	1 cut(s)	693
SfaNI	GCATC	5 cut(s)	219, 313, 588, 638, 994
SfcI	CTRYAG	1 cut(s)	936
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	5 cut(s)	190, 443, 539, 920, 955
SsiI	CCGC	3 cut(s)	718, 994, 1041
SspMI	CTAG	2 cut(s)	753, 998
SstI	GAGCTC	1 cut(s)	235
StyI	CCWWGG	2 cut(s)	49, 566
TaaI	ACNGT	3 cut(s)	473, 601, 914
TaqI	TCGA	2 cut(s)	182, 724
TasI	AATT	5 cut(s)	190, 443, 539, 920, 955
TauI	GCSGC	1 cut(s)	997
TscAI	CASTG	6 cut(s)	124, 621, 649, 816, 876, 919
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	3 cut(s)	85, 533, 800
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	2 cut(s)	15, 482
TspRI	CASTG	6 cut(s)	124, 621, 649, 816, 876, 919
XagI	CCTNNNNNAGG	1 cut(s)	375
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	2 cut(s)	753, 998
Zsp2I	ATGCAT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.