Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005616

Physical Location & Seq

Genomic Coordinates Reverse (-)

10701796 .. 10707244

Gene Structure 5449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G098800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGATGGGAGAGAAGCCATGGGATTGTCTGGTGGGTCAGCTCAATACTACATCCATAGGGGAGGGGTTGGTGGGTCTATGCCTGGATCACAGGCTGGTGGTGGACTGCATACTCCACCTGGGTTCAGGCACATGTCAAACACTGTCCTTCAACCTCAGTCTAATGTGAGGGTCAGCTCTGTAGGATCAACATTCTCAGTAGAGCCTTCAAGACCCAATTTTCCTCATCATGGCATTAGCATGAATGTCACTCCTGGAGTGCCTTCAGGTGAGCCTGTAAAGAAGAAAAGAGGGAGGCCCAGGAAGTATGGTCCTGATGGGCCGGTTTCTCTGGGATTGTCTCCCATGTCTGCAACACCTAATCCTAGACCAGGTTCAACCAGCCCCACTCCAAAACGTAGTAGAGGGCGGCCACCTGGGAGTGGTAGGAAACAACAGTTAGCTACTCTTGGGGACTGGATGAATACTTCAGCTGGACTGGCTTTTGCACCCCATGTTATCACCATTGGAGCTGGAGAGGACATTGCAGCAAAATTATTGTTGTTTTCACAACAGAGACCAAGGGCGCTATGCATTTTGTCAGGAAGTGGTACAGCATCTTCAGTAACTCTACGTCAGCCTGCATCTACTGGTGTCAGTGTCACGTTTGAGGGTCGTTTCCAGATATTATGCTTGTCAGGGTCGTACTTGGTTGCTGAGGATGGTGGACCACGCAATCGAACAGGGGGTATAAGTGTTTCCCTTTCTAGTCCTGATGGTCATGTCATTGGTGGTGCTGTGGCAATGCTTATTGCCGCAACTCCAGTGCAGGTTGTGCTGTGTAGTTTTGTCTATGGTGGCTCCAAGACCAAGAACAAGCAAGTGGCTGGTCCCAATAGCGACGAGAATTCTGAGCCTCAGCATAATGAGAAATTGGCTCTACCATCTAACACCCCGCCTACTCAAAATTATAATCCTTCCGGAGCAGGCATTTGGCCAGGTTCGCGGCAAGTTGATTTGAGAAATCCGCACACCGGCATTGACTTGACTCGCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0043621

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

346

Amino Acids

35.72

Weight (kDa)

10.24

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63470 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480
fragaria_vesca	FvH4_5g02200
malus_domestica	MD06G1081700.v1.1
prunus_persica	Prupe.5G098800_v2.0.a1
pyrus_communis	pycom06g07860 pycom14g09940
rosa_chinensis	RchiOBHm_Chr7g0197931
rosa_laevigata	RLG00000003902
rosa_multiflora	Rmu_co8232119.1_g000001 Rmu_co8341275.1_g000001 Rmu_sc0001082.1_g000013 Rmu_sc0016104.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258100
rosa_rugosa	Rorug07G0044500 Rorug07G0044500 Rorug07G0044600
rosa_samantha	Rh7AG168200 Rh7BG171000 Rh7CG177600 Rh7DG170200
rosa_wichuraiana	Rw7G014670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
Acc36I	ACCTGC	1 cut(s)	799
AccII	CGCG	2 cut(s)	985, 1032
AccIII	TCCGGA	1 cut(s)	959
AciI	CCGC	6 cut(s)	409, 795, 935, 985, 1007, 1032
AclWI	GGATC	2 cut(s)	94, 193
AcoI	YGGCCR	2 cut(s)	410, 974
AcsI	RAATTY	1 cut(s)	886
AcuI	CTGAAG	3 cut(s)	249, 453, 585
AfaI	GTAC	2 cut(s)	592, 686
AfiI	CCNNNNNNNGG	4 cut(s)	230, 371, 422, 1013
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	152, 210, 378
AjnI	CCWGG	7 cut(s)	82, 118, 253, 299, 370, 415, 976
AluBI	AGCT	5 cut(s)	41, 177, 443, 473, 512
AluI	AGCT	5 cut(s)	41, 177, 443, 473, 512
Alw26I	GTCTC	2 cut(s)	345, 550
AlwI	GGATC	2 cut(s)	94, 193
Aor13HI	TCCGGA	1 cut(s)	959
AoxI	GGCC	4 cut(s)	296, 320, 410, 974
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	1 cut(s)	886
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	5 cut(s)	297, 311, 320, 707, 869
AsuHPI	GGTGA	2 cut(s)	281, 493
AvaII	GGWCC	3 cut(s)	311, 707, 869
BalI	TGGCCA	1 cut(s)	976
BarI	GAAGNNNNNNTAC	2 cut(s)	583, 615
BbvCI	CCTCAGC	2 cut(s)	696, 897
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	4 cut(s)	311, 695, 749, 931
BciT130I	CCWGG	7 cut(s)	84, 120, 255, 301, 372, 417, 978
BcoDI	GTCTC	2 cut(s)	345, 550
BfaI	CTAG	2 cut(s)	366, 747
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	799
BisI	GCNGC	4 cut(s)	410, 528, 795, 986
BlsI	GCNGC	4 cut(s)	411, 529, 796, 987
Bme1390I	CCNGG	7 cut(s)	84, 120, 255, 301, 372, 417, 978
Bme18I	GGWCC	3 cut(s)	311, 707, 869
BmgT120I	GGNCC	5 cut(s)	297, 311, 320, 707, 869
BmiI	GGNNCC	2 cut(s)	841, 871
BmrFI	CCNGG	7 cut(s)	84, 120, 255, 301, 372, 417, 978
BmsI	GCATC	2 cut(s)	605, 632
BpmI	CTGGAG	3 cut(s)	276, 534, 786
Bpu10I	CCTNAGC	2 cut(s)	696, 897
BsaI	GGTCTC	1 cut(s)	550
BsaJI	CCNNGG	5 cut(s)	18, 119, 299, 416, 560
BsaWI	WCCGGW	1 cut(s)	959
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 371, 422, 1013
Bse118I	RCCGGY	2 cut(s)	322, 1013
Bse1I	ACTGG	4 cut(s)	461, 483, 634, 803
Bse3DI	GCAATG	2 cut(s)	522, 789
BseAI	TCCGGA	1 cut(s)	959
BseBI	CCWGG	7 cut(s)	84, 120, 255, 301, 372, 417, 978
BseDI	CCNNGG	5 cut(s)	18, 119, 299, 416, 560
BseGI	GGATG	4 cut(s)	10, 51, 465, 706
BseLI	CCNNNNNNNGG	4 cut(s)	230, 371, 422, 1013
BseMI	GCAATG	2 cut(s)	522, 789
BseMII	CTCAG	5 cut(s)	170, 210, 687, 882, 911
BseNI	ACTGG	4 cut(s)	461, 483, 634, 803
BseXI	GCAGC	1 cut(s)	539
BsgI	GTGCAG	1 cut(s)	827
Bsh1236I	CGCG	2 cut(s)	985, 1032
BshFI	GGCC	4 cut(s)	298, 322, 412, 976
BsiSI	CCGG	3 cut(s)	323, 960, 1014
BslFI	GGGAC	2 cut(s)	467, 855
BslI	CCNNNNNNNGG	4 cut(s)	230, 371, 422, 1013
BsmAI	GTCTC	2 cut(s)	345, 550
BsmFI	GGGAC	2 cut(s)	467, 855
BsnI	GGCC	4 cut(s)	298, 322, 412, 976
Bso31I	GGTCTC	1 cut(s)	550
Bsp13I	TCCGGA	1 cut(s)	959
Bsp143I	GATC	2 cut(s)	86, 185
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	6 cut(s)	409, 795, 935, 985, 1007, 1032
BspANI	GGCC	4 cut(s)	298, 322, 412, 976
BspCNI	CTCAG	5 cut(s)	169, 209, 688, 883, 910
BspEI	TCCGGA	1 cut(s)	959
BspFNI	CGCG	2 cut(s)	985, 1032
BspLI	GGNNCC	2 cut(s)	841, 871
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	2 cut(s)	94, 193
BspTNI	GGTCTC	1 cut(s)	550
BsrDI	GCAATG	2 cut(s)	522, 789
BsrFI	RCCGGY	2 cut(s)	322, 1013
BsrI	ACTGG	4 cut(s)	461, 483, 634, 803
BssAI	RCCGGY	2 cut(s)	322, 1013
BssECI	CCNNGG	5 cut(s)	18, 119, 299, 416, 560
BssMI	GATC	2 cut(s)	86, 185
BssT1I	CCWWGG	2 cut(s)	18, 560
Bst2UI	CCWGG	7 cut(s)	84, 120, 255, 301, 372, 417, 978
Bst4CI	ACNGT	2 cut(s)	145, 438
BstAPI	GCANNNNNTGC	1 cut(s)	814
BstC8I	GCNNGC	2 cut(s)	621, 967
BstDEI	CTNAG	5 cut(s)	156, 196, 696, 891, 897
BstDSI	CCRYGG	1 cut(s)	18
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	4 cut(s)	10, 51, 465, 706
BstFNI	CGCG	2 cut(s)	985, 1032
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	2 cut(s)	89, 188
BstMAI	GTCTC	2 cut(s)	345, 550
BstMBI	GATC	2 cut(s)	86, 185
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 814, 982
BstNI	CCWGG	7 cut(s)	84, 120, 255, 301, 372, 417, 978
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	7 cut(s)	82, 118, 253, 299, 370, 415, 976
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	2 cut(s)	985, 1032
BstV1I	GCAGC	1 cut(s)	539
BsuRI	GGCC	4 cut(s)	298, 322, 412, 976
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	4 cut(s)	10, 51, 465, 706
BtsIMutI	CAGTG	3 cut(s)	141, 643, 810
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	621, 967
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	2 cut(s)	322, 1013
Cfr13I	GGNCC	5 cut(s)	297, 311, 320, 707, 869
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	591, 685
CviAII	CATG	7 cut(s)	19, 133, 230, 241, 346, 494, 761
CviQI	GTAC	2 cut(s)	591, 685
DdeI	CTNAG	5 cut(s)	156, 196, 696, 891, 897
DpnI	GATC	2 cut(s)	88, 187
DpnII	GATC	2 cut(s)	86, 185
EaeI	YGGCCR	2 cut(s)	410, 974
Eco130I	CCWWGG	2 cut(s)	18, 560
Eco31I	GGTCTC	1 cut(s)	550
Eco47I	GGWCC	3 cut(s)	311, 707, 869
Eco57I	CTGAAG	3 cut(s)	249, 453, 585
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	886
EcoRII	CCWGG	7 cut(s)	82, 118, 253, 299, 370, 415, 976
EcoT14I	CCWWGG	2 cut(s)	18, 560
EcoT22I	ATGCAT	1 cut(s)	575
ErhI	CCWWGG	2 cut(s)	18, 560
FaeI	CATG	7 cut(s)	22, 136, 233, 244, 349, 497, 764
FaqI	GGGAC	2 cut(s)	467, 855
FatI	CATG	7 cut(s)	18, 132, 229, 240, 345, 493, 760
FauI	CCCGC	2 cut(s)	942, 1025
Fnu4HI	GCNGC	4 cut(s)	410, 528, 795, 986
FokI	GGATG	4 cut(s)	17, 38, 472, 713
Fsp4HI	GCNGC	4 cut(s)	410, 528, 795, 986
FspBI	CTAG	2 cut(s)	366, 747
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	4 cut(s)	410, 528, 795, 986
GsuI	CTGGAG	3 cut(s)	276, 534, 786
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	4 cut(s)	298, 322, 412, 976
HapII	CCGG	3 cut(s)	323, 960, 1014
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	7 cut(s)	22, 136, 233, 244, 349, 497, 764
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HinfI	GANTC	1 cut(s)	1027
HpaII	CCGG	3 cut(s)	323, 960, 1014
HphI	GGTGA	2 cut(s)	281, 493
Hpy166II	GTNNAC	2 cut(s)	104, 707
Hpy188I	TCNGA	1 cut(s)	892
Hpy188III	TCNNGA	6 cut(s)	210, 314, 582, 661, 752, 960
Hpy8I	GTNNAC	2 cut(s)	104, 707
Hpy99I	CGWCG	1 cut(s)	884
HpyAV	CCTTC	4 cut(s)	158, 216, 273, 966
HpyCH4III	ACNGT	2 cut(s)	145, 438
HpyCH4IV	ACGT	3 cut(s)	397, 613, 644
HpyCH4V	TGCA	7 cut(s)	109, 353, 488, 527, 573, 623, 808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 814, 982
HpyF3I	CTNAG	5 cut(s)	156, 196, 696, 891, 897
HpySE526I	ACGT	3 cut(s)	397, 613, 644
Hsp92II	CATG	7 cut(s)	22, 136, 233, 244, 349, 497, 764
HspAI	GCGC	1 cut(s)	566
Kpn2I	TCCGGA	1 cut(s)	959
Kzo9I	GATC	2 cut(s)	86, 185
LmnI	GCTCC	3 cut(s)	509, 845, 962
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	2 cut(s)	605, 632
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	2 cut(s)	366, 747
MaeII	ACGT	3 cut(s)	397, 613, 644
MaeIII	GTNAC	3 cut(s)	247, 604, 640
MalI	GATC	2 cut(s)	88, 187
MboI	GATC	2 cut(s)	86, 185
MboII	GAAGA	2 cut(s)	295, 591
MlsI	TGGCCA	1 cut(s)	976
MluCI	AATT	5 cut(s)	217, 533, 886, 911, 946
MluNI	TGGCCA	1 cut(s)	976
MlyI	GAGTC	1 cut(s)	1021
Mox20I	TGGCCA	1 cut(s)	976
Mph1103I	ATGCAT	1 cut(s)	575
MroI	TCCGGA	1 cut(s)	959
MscI	TGGCCA	1 cut(s)	976
MslI	CAYNNNNRTG	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	976
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	3 cut(s)	323, 960, 1014
MspR9I	CCNGG	7 cut(s)	84, 120, 255, 301, 372, 417, 978
MvaI	CCWGG	7 cut(s)	84, 120, 255, 301, 372, 417, 978
MvnI	CGCG	2 cut(s)	985, 1032
MwoI	GCNNNNNNNGC	3 cut(s)	479, 814, 982
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	86, 185
NlaIII	CATG	7 cut(s)	22, 136, 233, 244, 349, 497, 764
NlaIV	GGNNCC	2 cut(s)	841, 871
NmuCI	GTSAC	2 cut(s)	247, 640
NsiI	ATGCAT	1 cut(s)	575
NspI	RCATGY	1 cut(s)	136
PciI	ACATGT	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	411, 529, 796, 987
PleI	GAGTC	1 cut(s)	1021
PpsI	GAGTC	1 cut(s)	1021
PscI	ACATGT	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	951
Psp6I	CCWGG	7 cut(s)	82, 118, 253, 299, 370, 415, 976
PspGI	CCWGG	7 cut(s)	82, 118, 253, 299, 370, 415, 976
PspN4I	GGNNCC	2 cut(s)	841, 871
PspPI	GGNCC	5 cut(s)	297, 311, 320, 707, 869
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	2 cut(s)	592, 686
RsaNI	GTAC	2 cut(s)	591, 685
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	4 cut(s)	410, 528, 795, 986
Sau3AI	GATC	2 cut(s)	86, 185
Sau96I	GGNCC	5 cut(s)	297, 311, 320, 707, 869
SchI	GAGTC	1 cut(s)	1021
ScrFI	CCNGG	7 cut(s)	84, 120, 255, 301, 372, 417, 978
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	2 cut(s)	605, 632
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	3 cut(s)	311, 707, 869
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	5 cut(s)	217, 533, 886, 911, 946
SsiI	CCGC	6 cut(s)	409, 795, 935, 985, 1007, 1032
SspMI	CTAG	2 cut(s)	366, 747
StyD4I	CCNGG	7 cut(s)	82, 118, 253, 299, 370, 415, 976
StyI	CCWWGG	2 cut(s)	18, 560
TaaI	ACNGT	2 cut(s)	145, 438
TaiI	ACGT	3 cut(s)	400, 616, 647
TaqI	TCGA	1 cut(s)	718
TasI	AATT	5 cut(s)	217, 533, 886, 911, 946
TauI	GCSGC	3 cut(s)	412, 797, 988
TscAI	CASTG	3 cut(s)	148, 643, 810
TseFI	GTSAC	2 cut(s)	247, 640
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	2 cut(s)	247, 640
TspDTI	ATGAA	2 cut(s)	257, 476
TspRI	CASTG	3 cut(s)	148, 643, 810
VpaK11BI	GGWCC	3 cut(s)	311, 707, 869
XagI	CCTNNNNNAGG	1 cut(s)	369
XapI	RAATTY	1 cut(s)	886
XceI	RCATGY	1 cut(s)	136
XspI	CTAG	2 cut(s)	366, 747
Zsp2I	ATGCAT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.