Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005616

Physical Location & Seq

Genomic Coordinates Reverse (-)

12259898 .. 12263843

Gene Structure 3946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATGGGAGGGAAGCAATGGGATTGTCTGGTGGGTCAGCTTCATACTACATCCATAGGGGAGGAGGGGTTGGTGGGTCTATGCCTGGATCACAGGCTACTGGCGGTGGCGGCGGACTTCATCATGCTCCACCTGGGTTCAGGCCCATCTCAAACACACTCATGCAACCTCAGTCCAATGTGAGGGTCAGCTCTGCGGGATCAACATTCTCAGTAGAGCCTTCAAGACCCAATTTTCAACATCGTGGCAGTACCATGAATGTCGCTCCCGGAGTGCCTTCAGCTCAGCCTGTAAAGAAGAAAAGAGGGAGGCCCCGGAAGTATGGCCCCGATGGGCCGGTTTCTCTGGGGTTGTCTCCCATGTCTGCAACACCTACTCCTACACCGGGTTCAACCAGTCCGACCCCGAAACGTAGTAGAGGGAGGCCACCTGGGAGTGGTAGGAAGCAACAGTTGGCTACTCTTGGGGATTGGATGAACACTTCAGCCGGATTAGCTTTTGCACCCCATGTTATCACCATTGGAGCTGGAGAGGACATTGCAGCAAAATTATTGTTGTTTGCACAACAGAGACCAAGGGCGCTATGCATCTTGTCAGGAAATGGTGCAGTGTCTTCAGTAACTCTACGTGAGCCTGCATCTACTGGTGTCAGTGTCACATATGAGGGTCGGTTCCAGATATTATGCTTGTCAGGTTCTTACTTAGTTGCAGAGGATGGTGGACCTCGCAATCGAACGGGGGGAATAAGCGTTTCCCTTTCTAATCCTAATGGTCATGTCATTGGTGGTGCTGTGGCAGTGCTGATTGCAGCGACTCCAGTGCAGGTTGTGCTTTGCAGTTTCGTATATGGTGGCTCCAAGACCAAGAACAAGCAACTGGCTGATCCCAATAGCGATGAGAATTCCGAGCCACAGCATAGCGAGAAATTGGGTCTACCAAGCAGTGCCCCACCAACTCAAAATTATAATCCCTCCGGAGCAGGCATATGGCCTGGCTCGCGGCAAGTTGATTTGAGAAATGCCCACACCGGTATTGACTTGACTCGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0043621

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

351

Amino Acids

35.93

Weight (kDa)

10.18

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63470 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480
fragaria_vesca	FvH4_5g02200
malus_domestica	MD06G1081700.v1.1
prunus_persica	Prupe.5G098800_v2.0.a1
pyrus_communis	pycom06g07860 pycom14g09940
rosa_chinensis	RchiOBHm_Chr7g0197931
rosa_laevigata	RLG00000003902
rosa_multiflora	Rmu_co8232119.1_g000001 Rmu_co8341275.1_g000001 Rmu_sc0001082.1_g000013 Rmu_sc0016104.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258100
rosa_rugosa	Rorug07G0044500 Rorug07G0044500 Rorug07G0044600
rosa_samantha	Rh7AG168200 Rh7BG171000 Rh7CG177600 Rh7DG170200
rosa_wichuraiana	Rw7G014670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	966
Acc36I	ACCTGC	1 cut(s)	814
AccI	GTMKAC	1 cut(s)	934
AccII	CGCG	1 cut(s)	1000
AccIII	TCCGGA	1 cut(s)	974
AciI	CCGC	5 cut(s)	105, 111, 114, 197, 1000
AclWI	GGATC	3 cut(s)	97, 208, 878
AcsI	RAATTY	1 cut(s)	901
AcuI	CTGAAG	3 cut(s)	264, 468, 600
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	183, 386, 437
AgeI	ACCGGT	1 cut(s)	1028
AgsI	TTSAA	3 cut(s)	225, 239, 393
AjnI	CCWGG	4 cut(s)	85, 133, 430, 991
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	5 cut(s)	41, 192, 284, 497, 527
AluI	AGCT	5 cut(s)	41, 192, 284, 497, 527
Alw26I	GTCTC	2 cut(s)	360, 565
AlwI	GGATC	3 cut(s)	97, 208, 878
Ama87I	CYCGRG	1 cut(s)	1044
Aor13HI	TCCGGA	1 cut(s)	974
AoxI	GGCC	6 cut(s)	143, 311, 325, 335, 425, 989
ApeKI	GCWGC	2 cut(s)	542, 809
ApoI	RAATTY	1 cut(s)	901
AsiGI	ACCGGT	1 cut(s)	1028
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	5 cut(s)	144, 312, 326, 335, 722
AsuC2I	CCSGG	3 cut(s)	270, 316, 387
AsuHPI	GGTGA	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	1044
AvaII	GGWCC	1 cut(s)	722
BaeGI	GKGCMC	1 cut(s)	949
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	554, 821
BccI	CCATC	3 cut(s)	155, 326, 710
BcgI	CGANNNNNNTGC	2 cut(s)	802, 836
BciT130I	CCWGG	4 cut(s)	87, 135, 432, 993
BcnI	CCSGG	3 cut(s)	270, 316, 387
BcoDI	GTCTC	2 cut(s)	360, 565
BfoI	RGCGCY	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	814
BisI	GCNGC	4 cut(s)	112, 543, 810, 1001
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	4 cut(s)	113, 544, 811, 1002
Bme1390I	CCNGG	7 cut(s)	87, 135, 270, 316, 387, 432, 993
Bme18I	GGWCC	1 cut(s)	722
BmeT110I	CYCGRG	1 cut(s)	1044
BmgT120I	GGNCC	5 cut(s)	144, 312, 326, 335, 722
BmiI	GGNNCC	4 cut(s)	314, 328, 674, 856
BmrFI	CCNGG	7 cut(s)	87, 135, 270, 316, 387, 432, 993
BmsI	GCATC	2 cut(s)	597, 647
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	2 cut(s)	549, 801
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuMI	CCSGG	3 cut(s)	270, 316, 387
BsaAI	YACGTR	1 cut(s)	629
BsaI	GGTCTC	1 cut(s)	565
BsaJI	CCNNGG	4 cut(s)	134, 314, 431, 575
BsaWI	WCCGGW	2 cut(s)	974, 1028
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 361, 391
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 386, 437
Bse118I	RCCGGY	2 cut(s)	337, 1028
Bse1I	ACTGG	5 cut(s)	106, 396, 649, 818, 882
Bse3DI	GCAATG	2 cut(s)	24, 537
BseAI	TCCGGA	1 cut(s)	974
BseBI	CCWGG	4 cut(s)	87, 135, 432, 993
BseDI	CCNNGG	4 cut(s)	134, 314, 431, 575
BseGI	GGATG	4 cut(s)	10, 51, 480, 721
BseLI	CCNNNNNNNGG	3 cut(s)	183, 386, 437
BseMI	GCAATG	2 cut(s)	24, 537
BseMII	CTCAG	3 cut(s)	185, 225, 299
BseNI	ACTGG	5 cut(s)	106, 396, 649, 818, 882
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	949
BseXI	GCAGC	2 cut(s)	554, 821
BsgI	GTGCAG	2 cut(s)	627, 842
Bsh1236I	CGCG	1 cut(s)	1000
BshFI	GGCC	6 cut(s)	145, 313, 327, 337, 427, 991
BshTI	ACCGGT	1 cut(s)	1028
BsiHKCI	CYCGRG	1 cut(s)	1044
BsiSI	CCGG	7 cut(s)	270, 316, 338, 386, 489, 975, 1029
BslI	CCNNNNNNNGG	3 cut(s)	183, 386, 437
BsmAI	GTCTC	2 cut(s)	360, 565
BsnI	GGCC	6 cut(s)	145, 313, 327, 337, 427, 991
Bso31I	GGTCTC	1 cut(s)	565
BsoBI	CYCGRG	1 cut(s)	1044
Bsp1286I	GDGCHC	1 cut(s)	949
Bsp13I	TCCGGA	1 cut(s)	974
Bsp143I	GATC	3 cut(s)	89, 200, 883
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	5 cut(s)	105, 111, 114, 197, 1000
BspANI	GGCC	6 cut(s)	145, 313, 327, 337, 427, 991
BspCNI	CTCAG	3 cut(s)	184, 224, 298
BspEI	TCCGGA	1 cut(s)	974
BspFNI	CGCG	1 cut(s)	1000
BspLI	GGNNCC	4 cut(s)	314, 328, 674, 856
BspMI	ACCTGC	1 cut(s)	814
BspPI	GGATC	3 cut(s)	97, 208, 878
BspTNI	GGTCTC	1 cut(s)	565
BsrDI	GCAATG	2 cut(s)	24, 537
BsrFI	RCCGGY	2 cut(s)	337, 1028
BsrI	ACTGG	5 cut(s)	106, 396, 649, 818, 882
BssAI	RCCGGY	2 cut(s)	337, 1028
BssECI	CCNNGG	4 cut(s)	134, 314, 431, 575
BssMI	GATC	3 cut(s)	89, 200, 883
BssT1I	CCWWGG	1 cut(s)	575
Bst2UI	CCWGG	4 cut(s)	87, 135, 432, 993
Bst4CI	ACNGT	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	829
BstBAI	YACGTR	1 cut(s)	629
BstC8I	GCNNGC	3 cut(s)	636, 982, 998
BstDEI	CTNAG	4 cut(s)	171, 211, 285, 703
BstF5I	GGATG	4 cut(s)	10, 51, 480, 721
BstFNI	CGCG	1 cut(s)	1000
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	3 cut(s)	92, 203, 886
BstMAI	GTCTC	2 cut(s)	360, 565
BstMBI	GATC	3 cut(s)	89, 200, 883
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 494, 829, 997
BstNI	CCWGG	4 cut(s)	87, 135, 432, 993
BstSCI	CCNGG	7 cut(s)	85, 133, 268, 314, 385, 430, 991
BstSLI	GKGCMC	1 cut(s)	949
BstUI	CGCG	1 cut(s)	1000
BstV1I	GCAGC	2 cut(s)	554, 821
BstV2I	GAAGAC	1 cut(s)	606
BsuRI	GGCC	6 cut(s)	145, 313, 327, 337, 427, 991
BtgZI	GCGATG	1 cut(s)	909
BtsCI	GGATG	4 cut(s)	10, 51, 480, 721
BtsI	GCAGTG	3 cut(s)	615, 804, 949
BtsIMutI	CAGTG	5 cut(s)	615, 658, 804, 825, 949
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	3 cut(s)	636, 982, 998
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	2 cut(s)	337, 1028
Cfr13I	GGNCC	5 cut(s)	144, 312, 326, 335, 722
Csp6I	GTAC	1 cut(s)	252
CspAI	ACCGGT	1 cut(s)	1028
CviAII	CATG	6 cut(s)	125, 163, 256, 361, 509, 776
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	4 cut(s)	171, 211, 285, 703
DpnI	GATC	3 cut(s)	91, 202, 885
DpnII	GATC	3 cut(s)	89, 200, 883
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	575
Eco31I	GGTCTC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	722
Eco57I	CTGAAG	3 cut(s)	264, 468, 600
Eco88I	CYCGRG	1 cut(s)	1044
EcoO109I	RGGNCCY	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	901
EcoRII	CCWGG	4 cut(s)	85, 133, 430, 991
EcoT14I	CCWWGG	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	6 cut(s)	128, 166, 259, 364, 512, 779
FatI	CATG	6 cut(s)	124, 162, 255, 360, 508, 775
FauI	CCCGC	1 cut(s)	190
FauNDI	CATATG	2 cut(s)	661, 986
FblI	GTMKAC	1 cut(s)	934
Fnu4HI	GCNGC	4 cut(s)	112, 543, 810, 1001
FokI	GGATG	4 cut(s)	17, 38, 487, 728
Fsp4HI	GCNGC	4 cut(s)	112, 543, 810, 1001
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	4 cut(s)	112, 543, 810, 1001
GsuI	CTGGAG	2 cut(s)	549, 801
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	6 cut(s)	145, 313, 327, 337, 427, 991
HapII	CCGG	7 cut(s)	270, 316, 338, 386, 489, 975, 1029
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	6 cut(s)	128, 166, 259, 364, 512, 779
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	2 cut(s)	814, 1042
HpaII	CCGG	7 cut(s)	270, 316, 338, 386, 489, 975, 1029
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	2 cut(s)	722, 935
Hpy188I	TCNGA	2 cut(s)	402, 907
Hpy188III	TCNNGA	4 cut(s)	225, 597, 676, 975
Hpy8I	GTNNAC	2 cut(s)	722, 935
HpyAV	CCTTC	2 cut(s)	231, 288
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	2 cut(s)	412, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 494, 829, 997
HpyF3I	CTNAG	4 cut(s)	171, 211, 285, 703
HpySE526I	ACGT	2 cut(s)	412, 628
Hsp92II	CATG	6 cut(s)	128, 166, 259, 364, 512, 779
HspAI	GCGC	1 cut(s)	581
Kpn2I	TCCGGA	1 cut(s)	974
Kzo9I	GATC	3 cut(s)	89, 200, 883
LmnI	GCTCC	5 cut(s)	133, 271, 524, 860, 977
Lsp1109I	GCAGC	2 cut(s)	554, 821
LweI	GCATC	2 cut(s)	597, 647
MaeII	ACGT	2 cut(s)	412, 628
MaeIII	GTNAC	2 cut(s)	619, 655
MalI	GATC	3 cut(s)	91, 202, 885
MboI	GATC	3 cut(s)	89, 200, 883
MboII	GAAGA	2 cut(s)	310, 606
MhlI	GDGCHC	1 cut(s)	949
MluCI	AATT	5 cut(s)	232, 548, 901, 926, 961
MlyI	GAGTC	2 cut(s)	808, 1036
MmeI	TCCRAC	1 cut(s)	425
Mph1103I	ATGCAT	1 cut(s)	590
MroI	TCCGGA	1 cut(s)	974
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	7 cut(s)	270, 316, 338, 386, 489, 975, 1029
MspR9I	CCNGG	7 cut(s)	87, 135, 270, 316, 387, 432, 993
MvaI	CCWGG	4 cut(s)	87, 135, 432, 993
MvnI	CGCG	1 cut(s)	1000
MwoI	GCNNNNNNNGC	4 cut(s)	111, 494, 829, 997
NciI	CCSGG	3 cut(s)	270, 316, 387
NdeI	CATATG	2 cut(s)	661, 986
NdeII	GATC	3 cut(s)	89, 200, 883
NlaIII	CATG	6 cut(s)	128, 166, 259, 364, 512, 779
NlaIV	GGNNCC	4 cut(s)	314, 328, 674, 856
NmuCI	GTSAC	1 cut(s)	655
NsiI	ATGCAT	1 cut(s)	590
PaeR7I	CTCGAG	1 cut(s)	1044
PfoI	TCCNGGA	1 cut(s)	268
PinAI	ACCGGT	1 cut(s)	1028
PkrI	GCNGC	4 cut(s)	113, 544, 811, 1002
PleI	GAGTC	2 cut(s)	808, 1036
PpsI	GAGTC	2 cut(s)	808, 1036
Ppu21I	YACGTR	1 cut(s)	629
PsiI	TTATAA	1 cut(s)	966
Psp6I	CCWGG	4 cut(s)	85, 133, 430, 991
PspGI	CCWGG	4 cut(s)	85, 133, 430, 991
PspN4I	GGNNCC	4 cut(s)	314, 328, 674, 856
PspPI	GGNCC	5 cut(s)	144, 312, 326, 335, 722
PspXI	VCTCGAGB	1 cut(s)	1044
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	4 cut(s)	112, 543, 810, 1001
Sau3AI	GATC	3 cut(s)	89, 200, 883
Sau96I	GGNCC	5 cut(s)	144, 312, 326, 335, 722
SchI	GAGTC	2 cut(s)	808, 1036
ScrFI	CCNGG	7 cut(s)	87, 135, 270, 316, 387, 432, 993
SduI	GDGCHC	1 cut(s)	949
SfaNI	GCATC	2 cut(s)	597, 647
Sfr274I	CTCGAG	1 cut(s)	1044
SinI	GGWCC	1 cut(s)	722
SlaI	CTCGAG	1 cut(s)	1044
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	1044
SmoI	CTYRAG	1 cut(s)	1044
Sse9I	AATT	5 cut(s)	232, 548, 901, 926, 961
SsiI	CCGC	5 cut(s)	105, 111, 114, 197, 1000
StyD4I	CCNGG	7 cut(s)	85, 133, 268, 314, 385, 430, 991
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	2 cut(s)	415, 631
TaqI	TCGA	2 cut(s)	733, 1045
TasI	AATT	5 cut(s)	232, 548, 901, 926, 961
TauI	GCSGC	2 cut(s)	114, 1003
TscAI	CASTG	5 cut(s)	615, 658, 804, 825, 949
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	2 cut(s)	542, 809
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	4 cut(s)	33, 110, 272, 491
TspRI	CASTG	5 cut(s)	615, 658, 804, 825, 949
VpaK11BI	GGWCC	1 cut(s)	722
XapI	RAATTY	1 cut(s)	901
XhoI	CTCGAG	1 cut(s)	1044
XmiI	GTMKAC	1 cut(s)	934
Zsp2I	ATGCAT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.