Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005616

Physical Location & Seq

Genomic Coordinates Reverse (-)

3253195 .. 3254760

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0044500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGACCTAGAGGCAAGGAGTCTGCAGCCGAGTGTGAAGACGACGCTTCTTCCCAAGGTGAGAGAATACAAAACTGATTTGAACAACTTGAAGAGCCAAGTTAAGAGAATAACAACACCAGAGATCAGTCATTTAGCCCGCGAGGAGTTGTTGGGGTCTGGAGAAACAGATACCTTGACGGCCTCAAATGATCAAAGAGGAAGGTTGTTGATGACAACAGAAAGAATAAACCAGTCAAGTGACAGAATCAAGGCGAGTAGAAGAACAGTGCTGGAAACAGAGGAGCTTGGTGTTACGATTCTCCAAGACTTGCATCAACAACGCCAGTCTCTTCTACATTCCAGTAACAATTTGCATGCGGTGGATGAAACTATTACCAACAGTAAGAAGGTTCTGGTAGCCATGACAAGAAGGATGAGCAGAAACAAATGGATCATGGGTTCCATAGTAGGAGTTCTGGTCCTTGCAATCCTGCTTATTCTTTACTTGAAGATATCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0043621

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

167

Amino Acids

18.92

Weight (kDa)

9.84

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 37	3.4e-08	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	74 - 139	1.9e-17	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63470 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480
fragaria_vesca	FvH4_5g02200
malus_domestica	MD06G1081700.v1.1
prunus_persica	Prupe.5G098800_v2.0.a1
pyrus_communis	pycom06g07860 pycom14g09940
rosa_chinensis	RchiOBHm_Chr7g0197931
rosa_laevigata	RLG00000003902
rosa_multiflora	Rmu_co8232119.1_g000001 Rmu_co8341275.1_g000001 Rmu_sc0001082.1_g000013 Rmu_sc0016104.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258100
rosa_rugosa	Rorug07G0044500 Rorug07G0044500 Rorug07G0044600
rosa_samantha	Rh7AG168200 Rh7BG171000 Rh7CG177600 Rh7DG170200
rosa_wichuraiana	Rw7G014670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	141
AciI	CCGC	2 cut(s)	139, 359
AclWI	GGATC	1 cut(s)	440
AgsI	TTSAA	3 cut(s)	82, 91, 490
AloI	GAACNNNNNNTCC	2 cut(s)	424, 456
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	440
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	4, 460
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	4, 460
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	195
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	2 cut(s)	8, 502
BfmI	CTRYAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme18I	GGWCC	2 cut(s)	4, 460
BmgT120I	GGNCC	2 cut(s)	4, 460
BmiI	GGNNCC	1 cut(s)	442
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bse1I	ACTGG	3 cut(s)	232, 325, 342
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	2 cut(s)	370, 420
BseNI	ACTGG	3 cut(s)	232, 325, 342
BseRI	GAGGAG	2 cut(s)	158, 296
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	123, 190, 432
BspACI	CCGC	2 cut(s)	139, 359
BspANI	GGCC	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	1 cut(s)	440
BspQI	GCTCTTC	1 cut(s)	86
BsrI	ACTGG	3 cut(s)	232, 325, 342
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	123, 190, 432
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	268, 383
Bst6I	CTCTTC	2 cut(s)	86, 336
BstC8I	GCNNGC	2 cut(s)	139, 357
BstF5I	GGATG	2 cut(s)	370, 420
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	3 cut(s)	126, 193, 435
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	3 cut(s)	123, 190, 432
BstNSI	RCATGY	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	370, 420
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	139, 357
Cfr13I	GGNCC	2 cut(s)	4, 460
CseI	GACGC	1 cut(s)	52
CviAII	CATG	3 cut(s)	356, 403, 436
CviJI	RGCY	6 cut(s)	28, 96, 137, 182, 286, 401
CviKI_1	RGCY	6 cut(s)	28, 96, 137, 182, 286, 401
DpnI	GATC	3 cut(s)	125, 192, 434
DpnII	GATC	3 cut(s)	123, 190, 432
Eam1104I	CTCTTC	2 cut(s)	86, 336
EarI	CTCTTC	2 cut(s)	86, 336
Eco130I	CCWWGG	1 cut(s)	54
Eco32I	GATATC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	4, 460
EcoRV	GATATC	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	3 cut(s)	359, 406, 439
FaiI	YATR	4 cut(s)	357, 404, 437, 446
FatI	CATG	3 cut(s)	355, 402, 435
FauI	CCCGC	1 cut(s)	146
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	2 cut(s)	377, 427
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	2 cut(s)	8, 502
GluI	GCNGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	182
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	359, 406, 439
HinfI	GANTC	3 cut(s)	19, 246, 298
HphI	GGTGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	195, 382, 405
HpyCH4III	ACNGT	2 cut(s)	268, 383
HpyCH4V	TGCA	4 cut(s)	25, 313, 355, 467
Hsp92II	CATG	3 cut(s)	359, 406, 439
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	123, 190, 432
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	9 cut(s)	132, 144, 245, 257, 338, 355, 380, 443, 485
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	2 cut(s)	8, 502
MaeIII	GTNAC	3 cut(s)	239, 292, 344
MalI	GATC	3 cut(s)	125, 192, 434
MboI	GATC	3 cut(s)	123, 190, 432
MboII	GAAGA	6 cut(s)	41, 49, 103, 273, 323, 502
MluCI	AATT	1 cut(s)	349
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	5 cut(s)	4, 136, 191, 193, 274
MseI	TTAA	1 cut(s)	102
MvnI	CGCG	1 cut(s)	141
NdeII	GATC	3 cut(s)	123, 190, 432
NlaIII	CATG	3 cut(s)	359, 406, 439
NlaIV	GGNNCC	1 cut(s)	442
NmeAIII	GCCGAG	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	359
PaeI	GCATGC	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	246, 298
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	2 cut(s)	4, 460
PstI	CTGCAG	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	3 cut(s)	123, 190, 432
Sau96I	GGNCC	2 cut(s)	4, 460
SchI	GAGTC	1 cut(s)	28
SetI	ASST	6 cut(s)	9, 60, 176, 206, 288, 393
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	23
SinI	GGWCC	2 cut(s)	4, 460
SphI	GCATGC	1 cut(s)	359
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	139, 359
SspMI	CTAG	2 cut(s)	8, 502
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	268, 383
TasI	AATT	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	246, 298
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	381
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	2 cut(s)	4, 460
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	2 cut(s)	8, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.