Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341275.1

Orthogroup ID

OG0005616

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1009

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

cctgggttcaggcccaacaacactgcctttcaacaagctcagtctaatgtgagggcctcctcagcattctcagtagagccttcttcgagacccaattaccctcatggcattagcatcaatgtttctcccggaggagctccttcttctggtgagcctgtaaagaagaaacgagggaggccccggaagtatgggcctggccctgctcctggccctggttcggctcctgatgccccggtttctctggcattgtctccaatgtcttcaactcctaatcctactccaggatcaacctcaccgactccgaaacgaaacagaggaaggccacctgggactggcaggaaacaacaattggctaatcttggggaatggatgaacagttcggctggacaggcttttgcaccccatgttatcaccattgaagctggagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0043621

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

143

Amino Acids

14.7

Weight (kDa)

11.23

Isoelectric Point (pI)

62.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63470 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480
fragaria_vesca	FvH4_5g02200
malus_domestica	MD06G1081700.v1.1
prunus_persica	Prupe.5G098800_v2.0.a1
pyrus_communis	pycom06g07860 pycom14g09940
rosa_chinensis	RchiOBHm_Chr7g0197931
rosa_laevigata	RLG00000003902
rosa_multiflora	Rmu_co8232119.1_g000001 Rmu_co8341275.1_g000001 Rmu_sc0001082.1_g000013 Rmu_sc0016104.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258100
rosa_rugosa	Rorug07G0044500 Rorug07G0044500 Rorug07G0044600
rosa_samantha	Rh7AG168200 Rh7BG171000 Rh7CG177600 Rh7DG170200
rosa_wichuraiana	Rw7G014670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	292
AfiI	CCNNNNNNNGG	6 cut(s)	146, 206, 212, 217, 281, 332
AgsI	TTSAA	3 cut(s)	32, 264, 419
AjnI	CCWGG	5 cut(s)	193, 205, 211, 280, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AloI	GAACNNNNNNTCC	2 cut(s)	361, 393
AluBI	AGCT	3 cut(s)	38, 137, 422
AluI	AGCT	3 cut(s)	38, 137, 422
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	82, 255
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	7 cut(s)	11, 54, 176, 191, 196, 208, 320
AspS9I	GGNCC	6 cut(s)	12, 54, 177, 191, 197, 209
AsuC2I	CCSGG	3 cut(s)	129, 181, 233
AsuHPI	GGTGA	3 cut(s)	161, 285, 403
BanII	GRGCYC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	139
BbvCI	CCTCAGC	1 cut(s)	61
BciT130I	CCWGG	6 cut(s)	3, 195, 207, 213, 282, 327
BcnI	CCSGG	3 cut(s)	129, 181, 233
BcoDI	GTCTC	2 cut(s)	82, 255
Bme1390I	CCNGG	9 cut(s)	3, 129, 181, 195, 207, 213, 233, 282, 327
BmgT120I	GGNCC	6 cut(s)	12, 54, 177, 191, 197, 209
BmiI	GGNNCC	2 cut(s)	179, 222
BmrFI	CCNGG	9 cut(s)	3, 129, 181, 195, 207, 213, 233, 282, 327
BmsI	GCATC	2 cut(s)	123, 217
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	61
BpuMI	CCSGG	3 cut(s)	129, 181, 233
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	5 cut(s)	2, 179, 211, 231, 326
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 206, 212, 217, 281, 332
Bse1I	ACTGG	1 cut(s)	337
BseBI	CCWGG	6 cut(s)	3, 195, 207, 213, 282, 327
BseDI	CCNNGG	5 cut(s)	2, 179, 211, 231, 326
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	6 cut(s)	146, 206, 212, 217, 281, 332
BseMII	CTCAG	3 cut(s)	53, 75, 84
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	2 cut(s)	49, 147
BshFI	GGCC	7 cut(s)	13, 56, 178, 193, 198, 210, 322
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	3 cut(s)	129, 181, 233
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	6 cut(s)	146, 206, 212, 217, 281, 332
BsmAI	GTCTC	2 cut(s)	82, 255
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	7 cut(s)	13, 56, 178, 193, 198, 210, 322
Bso31I	GGTCTC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	284
BspANI	GGCC	7 cut(s)	13, 56, 178, 193, 198, 210, 322
BspCNI	CTCAG	3 cut(s)	52, 74, 83
BspLI	GGNNCC	2 cut(s)	179, 222
BspPI	GGATC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	5 cut(s)	2, 179, 211, 231, 326
BssMI	GATC	1 cut(s)	284
Bst2UI	CCWGG	6 cut(s)	3, 195, 207, 213, 282, 327
Bst4CI	ACNGT	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	39, 61, 70
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	375
BstKTI	GATC	1 cut(s)	287
BstMAI	GTCTC	2 cut(s)	82, 255
BstMBI	GATC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 227, 389
BstNI	CCWGG	6 cut(s)	3, 195, 207, 213, 282, 327
BstSCI	CCNGG	8 cut(s)	127, 179, 193, 205, 211, 231, 280, 325
BstV2I	GAAGAC	1 cut(s)	252
BsuRI	GGCC	7 cut(s)	13, 56, 178, 193, 198, 210, 322
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cfr13I	GGNCC	6 cut(s)	12, 54, 177, 191, 197, 209
CviAII	CATG	2 cut(s)	104, 404
DdeI	CTNAG	3 cut(s)	39, 61, 70
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	2 cut(s)	54, 177
EcoRII	CCWGG	5 cut(s)	193, 205, 211, 280, 325
EcoT38I	GRGCYC	1 cut(s)	139
FaeI	CATG	2 cut(s)	107, 407
FaiI	YATR	3 cut(s)	105, 189, 405
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	2 cut(s)	103, 403
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	7 cut(s)	13, 56, 178, 193, 198, 210, 322
HapII	CCGG	3 cut(s)	129, 181, 233
Hin1II	CATG	2 cut(s)	107, 407
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	3 cut(s)	129, 181, 233
HphI	GGTGA	3 cut(s)	161, 285, 403
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	2 cut(s)	87, 224
HpyAV	CCTTC	3 cut(s)	90, 150, 312
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 227, 389
HpyF3I	CTNAG	3 cut(s)	39, 61, 70
Hsp92II	CATG	2 cut(s)	107, 407
Kzo9I	GATC	1 cut(s)	284
LmnI	GCTCC	4 cut(s)	134, 142, 208, 226
LweI	GCATC	2 cut(s)	123, 217
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	4 cut(s)	75, 135, 175, 252
MfeI	CAATTG	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	2 cut(s)	94, 347
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	9 cut(s)	45, 67, 70, 111, 125, 164, 168, 301, 308
MspI	CCGG	3 cut(s)	129, 181, 233
MspR9I	CCNGG	9 cut(s)	3, 129, 181, 195, 207, 213, 233, 282, 327
MunI	CAATTG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	6 cut(s)	3, 195, 207, 213, 282, 327
MwoI	GCNNNNNNNGC	3 cut(s)	62, 227, 389
NciI	CCSGG	3 cut(s)	129, 181, 233
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	107, 407
NlaIV	GGNNCC	2 cut(s)	179, 222
PctI	GAATGC	1 cut(s)	65
PfoI	TCCNGGA	2 cut(s)	127, 280
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	139
Psp6I	CCWGG	5 cut(s)	193, 205, 211, 280, 325
PspGI	CCWGG	5 cut(s)	193, 205, 211, 280, 325
PspN4I	GGNNCC	2 cut(s)	179, 222
PspPI	GGNCC	6 cut(s)	12, 54, 177, 191, 197, 209
SacI	GAGCTC	1 cut(s)	139
Sau3AI	GATC	1 cut(s)	284
Sau96I	GGNCC	6 cut(s)	12, 54, 177, 191, 197, 209
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	9 cut(s)	3, 129, 181, 195, 207, 213, 233, 282, 327
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	5 cut(s)	40, 139, 293, 328, 424
SfaNI	GCATC	2 cut(s)	123, 217
Sse9I	AATT	2 cut(s)	94, 347
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	8 cut(s)	127, 179, 193, 205, 211, 231, 280, 325
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	1 cut(s)	86
TasI	AATT	2 cut(s)	94, 347
TscAI	CASTG	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.