Rh7BG171000

DNA-binding protein ESCAROLA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005616
Physical Location & Seq
Forward (+)
13328262 .. 13333091
4830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG171000.1

Sequence Viewer

Length: 1053 bp
ATGGATGGGAGAGAAGCCATGGCCATCTCTGGTGCTCAAGCTTCATACTACATCCATAGGGGAGGCCATGGTGGGTCTTCACCTGGATCACAGATTGCTGGGCTGCATGCACCACCTGGGTTCAGGCCCAACAACACTGCCTTTCAACAAGCTCAGTCTAATGTGAGGGCCACCTCAGCATTCTCAGTAGAGCCTTCTTCAAGACCCAATTACCCTCATGGCATTAGCATCAATGTTTCTCCCGGAGGAGCTCCTTCTTCCGGTGAGCCTGTCAAGAAGAAACGAGGGAGGCCCCGGAAGTATGGGCCTGGTCCTGGTTCGGCTCCTGATGCCCCGGTTTCTCTGGCATTGTCTCCAATGTCTTCAACTCCTAATCCTAATCCAGGATCAACCTCACCGACTCCGAAAAGAAACAGAGGAAGGCCACCTGGGACTGGCAGGAAACAACAATTGGCTAATCTTGGGGAATGGATGAACAGTTCGGCTGGACAGGCTTTTGCACCCCATGTTATCACCATTGAAGCTGGAGAGGACATTGCAGCAAAGTTATTGTTATTTTCACAACAGAGGCCAAGGGCACTATGCATCTTGTCAGGAAATGGAACAGTATCTTCAGTAGCACTGCGTCAGCCTGCATCAACTGGTGTCAGTGTCACATATGAGGGTCGTTTCCAGATATTATGCTTGTCAGGTTCTTACCTGGTTGCCGAGGATGGTGGCCCCCGCGATCGAACAGGGGGGATAAGCGTTTCCCTTTCTAGTTCTGATGGTCATGTCATTGGTGGTGCTGTGGCTATGCTTATTGCAGCAACTCCAGTGCAGATCGTGCTTTGCAGTTTTGTATATGGTAGCTCCAACAAGATCAAGAGCAAGCCAGTGGCTGACCCCAATAATGGGCAGAGTTCTGAGCCTCAGCACAGTGAGAAATTACCTTCACCGGCTACAGCTCCATCTACTCAAAATTATGCTCCATCCACAGCAGGCATTTGGCCTGGGGGGCGGCTAGTTGATGCGAGAAATGCTCACACCGGTATTGACTTGACTCGCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0043621
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

350

Amino Acids

35.98

Weight (kDa)

9.96

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 168 - 280 2.2e-22 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 726, 1047
AciI CCGC 3 cut(s) 724, 1000, 1047
AclWI GGATC 2 cut(s) 94, 394
AcoI YGGCCR 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 597
AfiI CCNNNNNNNGG 6 cut(s) 260, 314, 383, 434, 893, 894
AgeI ACCGGT 1 cut(s) 1028
AgsI TTSAA 4 cut(s) 146, 201, 366, 521
AjnI CCWGG 8 cut(s) 82, 115, 307, 313, 382, 427, 699, 991
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AloI GAACNNNNNNTCC 2 cut(s) 463, 495
AluBI AGCT 6 cut(s) 41, 152, 251, 524, 852, 947
AluI AGCT 6 cut(s) 41, 152, 251, 524, 852, 947
Alw21I GWGCWC 2 cut(s) 37, 253
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 2 cut(s) 94, 394
AlwNI CAGNNNCTG 1 cut(s) 881
ApeKI GCWGC 3 cut(s) 103, 539, 806
AsiGI ACCGGT 1 cut(s) 1028
AspS9I GGNCC 6 cut(s) 126, 168, 291, 305, 311, 719
AsuC2I CCSGG 3 cut(s) 243, 295, 335
AsuHPI GGTGA 5 cut(s) 72, 275, 387, 505, 927
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 580
BalI TGGCCA 1 cut(s) 23
BanII GRGCYC 1 cut(s) 253
BbsI GAAGAC 2 cut(s) 69, 354
Bbv12I GWGCWC 2 cut(s) 37, 253
BbvCI CCTCAGC 2 cut(s) 175, 912
BbvI GCAGC 3 cut(s) 90, 551, 818
BccI CCATC 5 cut(s) 32, 707, 761, 958, 979
BciT130I CCWGG 8 cut(s) 84, 117, 309, 315, 384, 429, 701, 993
BcnI CCSGG 3 cut(s) 243, 295, 335
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 2 cut(s) 759, 1004
BfmI CTRYAG 1 cut(s) 942
BglI GCCNNNNNGGC 1 cut(s) 997
BisI GCNGC 4 cut(s) 104, 540, 807, 1001
BlsI GCNGC 4 cut(s) 105, 541, 808, 1002
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 6 cut(s) 126, 168, 291, 305, 311, 719
BmiI GGNNCC 3 cut(s) 293, 324, 721
BmsI GCATC 5 cut(s) 237, 319, 594, 644, 1000
BpiI GAAGAC 2 cut(s) 69, 354
BplI GAGNNNNNCTC 2 cut(s) 1006, 1038
BpmI CTGGAG 2 cut(s) 546, 798
Bpu10I CCTNAGC 2 cut(s) 175, 912
BpuEI CTTGAG 1 cut(s) 21
BpuMI CCSGG 3 cut(s) 243, 295, 335
BsaJI CCNNGG 9 cut(s) 18, 67, 116, 293, 333, 428, 572, 708, 992
BsaWI WCCGGW 2 cut(s) 260, 1028
Bsc4I CCNNNNNNNGG 6 cut(s) 260, 314, 383, 434, 893, 894
Bse118I RCCGGY 2 cut(s) 937, 1028
Bse1I ACTGG 4 cut(s) 439, 646, 815, 875
Bse3DI GCAATG 1 cut(s) 534
BseBI CCWGG 8 cut(s) 84, 117, 309, 315, 384, 429, 701, 993
BseDI CCNNGG 9 cut(s) 18, 67, 116, 293, 333, 428, 572, 708, 992
BseGI GGATG 5 cut(s) 10, 51, 477, 718, 971
BseLI CCNNNNNNNGG 6 cut(s) 260, 314, 383, 434, 893, 894
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 5 cut(s) 167, 189, 198, 897, 926
BseNI ACTGG 4 cut(s) 439, 646, 815, 875
BseRI GAGGAG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 3 cut(s) 90, 551, 818
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 839
Bsh1236I CGCG 2 cut(s) 726, 1047
Bsh1285I CGRYCG 1 cut(s) 730
BshTI ACCGGT 1 cut(s) 1028
BsiEI CGRYCG 1 cut(s) 730
BsiHKAI GWGCWC 2 cut(s) 37, 253
BsiSI CCGG 6 cut(s) 243, 261, 295, 335, 938, 1029
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 6 cut(s) 260, 314, 383, 434, 893, 894
BsmAI GTCTC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 37, 253, 580
Bsp143I GATC 5 cut(s) 86, 386, 727, 822, 861
Bsp19I CCATGG 2 cut(s) 18, 67
BspACI CCGC 3 cut(s) 724, 1000, 1047
BspCNI CTCAG 5 cut(s) 166, 188, 197, 898, 925
BspFNI CGCG 2 cut(s) 726, 1047
BspLI GGNNCC 3 cut(s) 293, 324, 721
BspPI GGATC 2 cut(s) 94, 394
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 2 cut(s) 937, 1028
BsrI ACTGG 4 cut(s) 439, 646, 815, 875
BssAI RCCGGY 2 cut(s) 937, 1028
BssECI CCNNGG 9 cut(s) 18, 67, 116, 293, 333, 428, 572, 708, 992
BssMI GATC 5 cut(s) 86, 386, 727, 822, 861
BssT1I CCWWGG 3 cut(s) 18, 67, 572
Bst2UI CCWGG 8 cut(s) 84, 117, 309, 315, 384, 429, 701, 993
Bst4CI ACNGT 3 cut(s) 479, 607, 920
BstAPI GCANNNNNTGC 1 cut(s) 826
BstC8I GCNNGC 4 cut(s) 108, 633, 872, 982
BstDEI CTNAG 5 cut(s) 153, 175, 184, 906, 912
BstDSI CCRYGG 2 cut(s) 18, 67
BstENI CCTNNNNNAGG 1 cut(s) 381
BstF5I GGATG 5 cut(s) 10, 51, 477, 718, 971
BstFNI CGCG 2 cut(s) 726, 1047
BstKTI GATC 5 cut(s) 89, 389, 730, 825, 864
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 5 cut(s) 86, 386, 727, 822, 861
BstMCI CGRYCG 1 cut(s) 730
BstMWI GCNNNNNNNGC 6 cut(s) 176, 329, 491, 826, 997, 1019
BstNI CCWGG 8 cut(s) 84, 117, 309, 315, 384, 429, 701, 993
BstNSI RCATGY 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 942
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 2 cut(s) 726, 1047
BstV1I GCAGC 3 cut(s) 90, 551, 818
BstV2I GAAGAC 2 cut(s) 69, 354
BtgI CCRYGG 2 cut(s) 18, 67
BtsCI GGATG 5 cut(s) 10, 51, 477, 718, 971
BtsI GCAGTG 2 cut(s) 135, 620
BtsIMutI CAGTG 6 cut(s) 135, 620, 655, 822, 882, 925
Cac8I GCNNGC 4 cut(s) 108, 633, 872, 982
CaiI CAGNNNCTG 1 cut(s) 881
Cfr10I RCCGGY 2 cut(s) 937, 1028
Cfr13I GGNCC 6 cut(s) 126, 168, 291, 305, 311, 719
CseI GACGC 1 cut(s) 614
CsiI ACCWGGT 1 cut(s) 699
CspAI ACCGGT 1 cut(s) 1028
CviAII CATG 6 cut(s) 19, 68, 107, 218, 506, 773
DdeI CTNAG 5 cut(s) 153, 175, 184, 906, 912
DpnI GATC 5 cut(s) 88, 388, 729, 824, 863
DpnII GATC 5 cut(s) 86, 386, 727, 822, 861
EaeI YGGCCR 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 3 cut(s) 18, 67, 572
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 597
EcoICRI GAGCTC 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 291
EcoRII CCWGG 8 cut(s) 82, 115, 307, 313, 382, 427, 699, 991
EcoT14I CCWWGG 3 cut(s) 18, 67, 572
EcoT22I ATGCAT 1 cut(s) 587
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 3 cut(s) 18, 67, 572
FaeI CATG 6 cut(s) 22, 71, 110, 221, 509, 776
FaqI GGGAC 1 cut(s) 445
FatI CATG 6 cut(s) 18, 67, 106, 217, 505, 772
FauI CCCGC 1 cut(s) 731
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 4 cut(s) 104, 540, 807, 1001
FokI GGATG 5 cut(s) 17, 38, 484, 725, 958
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 4 cut(s) 104, 540, 807, 1001
FspBI CTAG 2 cut(s) 759, 1004
GluI GCNGC 4 cut(s) 104, 540, 807, 1001
GsaI CCCAGC 1 cut(s) 102
GsuI CTGGAG 2 cut(s) 546, 798
HapII CCGG 6 cut(s) 243, 261, 295, 335, 938, 1029
HgaI GACGC 1 cut(s) 614
Hin1II CATG 6 cut(s) 22, 71, 110, 221, 509, 776
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 2 cut(s) 400, 1042
HpaII CCGG 6 cut(s) 243, 261, 295, 335, 938, 1029
HphI GGTGA 5 cut(s) 72, 275, 387, 505, 927
Hpy188I TCNGA 3 cut(s) 405, 766, 907
Hpy188III TCNNGA 6 cut(s) 201, 274, 326, 594, 673, 865
HpyAV CCTTC 4 cut(s) 204, 264, 414, 942
HpyCH4III ACNGT 3 cut(s) 479, 607, 920
HpyCH4V TGCA 9 cut(s) 106, 110, 500, 539, 585, 635, 806, 820, 834
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 329, 491, 826, 997, 1019
HpyF3I CTNAG 5 cut(s) 153, 175, 184, 906, 912
Hsp92II CATG 6 cut(s) 22, 71, 110, 221, 509, 776
Kzo9I GATC 5 cut(s) 86, 386, 727, 822, 861
LmnI GCTCC 6 cut(s) 248, 256, 328, 857, 952, 973
Lsp1109I GCAGC 3 cut(s) 90, 551, 818
LweI GCATC 5 cut(s) 237, 319, 594, 644, 1000
MabI ACCWGGT 1 cut(s) 699
MaeI CTAG 2 cut(s) 759, 1004
MaeIII GTNAC 1 cut(s) 652
MalI GATC 5 cut(s) 88, 388, 729, 824, 863
MboI GATC 5 cut(s) 86, 386, 727, 822, 861
MboII GAAGA 6 cut(s) 69, 189, 249, 289, 354, 603
MfeI CAATTG 1 cut(s) 449
MhlI GDGCHC 3 cut(s) 37, 253, 580
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 4 cut(s) 208, 449, 926, 961
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 2 cut(s) 394, 1036
MmeI TCCRAC 1 cut(s) 879
Mox20I TGGCCA 1 cut(s) 23
Mph1103I ATGCAT 1 cut(s) 587
MscI TGGCCA 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 6 cut(s) 243, 261, 295, 335, 938, 1029
MunI CAATTG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 8 cut(s) 84, 117, 309, 315, 384, 429, 701, 993
MvnI CGCG 2 cut(s) 726, 1047
MwoI GCNNNNNNNGC 6 cut(s) 176, 329, 491, 826, 997, 1019
NciI CCSGG 3 cut(s) 243, 295, 335
NcoI CCATGG 2 cut(s) 18, 67
NdeI CATATG 1 cut(s) 658
NdeII GATC 5 cut(s) 86, 386, 727, 822, 861
NlaIII CATG 6 cut(s) 22, 71, 110, 221, 509, 776
NlaIV GGNNCC 3 cut(s) 293, 324, 721
NmeAIII GCCGAG 1 cut(s) 733
NmuCI GTSAC 1 cut(s) 652
NsiI ATGCAT 1 cut(s) 587
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PctI GAATGC 1 cut(s) 179
PfoI TCCNGGA 2 cut(s) 241, 382
PinAI ACCGGT 1 cut(s) 1028
PkrI GCNGC 4 cut(s) 105, 541, 808, 1002
Ple19I CGATCG 1 cut(s) 730
PleI GAGTC 2 cut(s) 394, 1036
PpsI GAGTC 2 cut(s) 394, 1036
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 8 cut(s) 82, 115, 307, 313, 382, 427, 699, 991
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 8 cut(s) 82, 115, 307, 313, 382, 427, 699, 991
PspN4I GGNNCC 3 cut(s) 293, 324, 721
PspPI GGNCC 6 cut(s) 126, 168, 291, 305, 311, 719
PstNI CAGNNNCTG 1 cut(s) 881
PvuI CGATCG 1 cut(s) 730
SacI GAGCTC 1 cut(s) 253
SatI GCNGC 4 cut(s) 104, 540, 807, 1001
Sau3AI GATC 5 cut(s) 86, 386, 727, 822, 861
Sau96I GGNCC 6 cut(s) 126, 168, 291, 305, 311, 719
SchI GAGTC 2 cut(s) 394, 1036
SduI GDGCHC 3 cut(s) 37, 253, 580
SexAI ACCWGGT 1 cut(s) 699
SfaNI GCATC 5 cut(s) 237, 319, 594, 644, 1000
SfcI CTRYAG 1 cut(s) 942
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
SphI GCATGC 1 cut(s) 110
Sse9I AATT 4 cut(s) 208, 449, 926, 961
SsiI CCGC 3 cut(s) 724, 1000, 1047
SspMI CTAG 2 cut(s) 759, 1004
SstI GAGCTC 1 cut(s) 253
StyI CCWWGG 3 cut(s) 18, 67, 572
TaaI ACNGT 3 cut(s) 479, 607, 920
TaqI TCGA 1 cut(s) 730
TasI AATT 4 cut(s) 208, 449, 926, 961
TauI GCSGC 1 cut(s) 1003
TscAI CASTG 6 cut(s) 142, 627, 655, 822, 882, 925
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 3 cut(s) 103, 539, 806
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 2 cut(s) 33, 488
TspRI CASTG 6 cut(s) 142, 627, 655, 822, 882, 925
VpaK11BI GGWCC 1 cut(s) 311
XagI CCTNNNNNAGG 1 cut(s) 381
XceI RCATGY 1 cut(s) 110
XspI CTAG 2 cut(s) 759, 1004
Zsp2I ATGCAT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.