Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005616

Physical Location & Seq

Genomic Coordinates Reverse (-)

12821916 .. 12826500

Gene Structure 4585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07860.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGATGGGAGGGAAGCAATGGGATTGTCTGGTGGGTCAGCTTCATACTACATCAATAGGGGAGGAGGGGTTGGTGGGTCTATTCCTGGATCACAGGCTGGCGGCGGTGGCGGACTTCACCATGCTGCACTTGGGTTCAGGCCCATCTCAAACACCCTCATCCAACCTCAGTCCAATGTGAGGGTCAGCTCTGTGGGATCAACATTCTCAGTGGAGCCTTCAAGACCCAATTTTGAACATCATGGCAGTACCATGAATGTCACTCCCGGAGCGCCTTCAGCTCAGCCTGTAAAGAAGAAAAGAGGGAGGCCCCGGAAGTATGGCCCCGATGGGCCAGTTTCTCTGGGGTTGTCTCCCATGTCTGCAACACCTACTCCTACACCGGGTTCAACCAATCCGACCGCGAAACGTAGTAGAGGGAGGCCACCTGGGAGTGGTAGGAAGCAACAGTTGGCTGCTCTTGGAGATTGGATGAACACTTCGGCAGGATTAGCTTTTGCACCCCATGTTATCACCATTGGAGTTGGAGAGGACATTGCAGCAAAATTATTGTTATTCGCACAACAGAGACCAAGGGCGCTATGCATATTGTCTGGAAATGGTGCAGTGTCTTCTGTAACTCTACGCGAGCCTGCATCTACTGGTGTCAGTGTCACATATGAGGGTCGGTTCCAGATATTATGCTTGTCAGGTTCGTACTTAGTTGCCGAGGATGGTGGACCTCGCAATCGAACAGGGGGAATAAGTGTTTCCCTTTCTAATCCTAATGGTCATGTCATTGGTGGTGCTGTCGCAGTGCTTATTGCAGCAACTCCAGTGCAGGTTGTGCTTTGCAGTTTTGTATATGGTAGCTCGAAGACCAAGAACAAGCAATTGGCTGGTCCCAATAGCGACGAGAATTCCGAGCCACAGCATAGCGAGAAATTGGCTCTACCAAGCAGTGCCCCACCTACTCAAAATTATAATCCCTCCGGTGCAGGCATTTGGCCTGGCTCGCGGCAAGTTGATTTGAGAAATGGCCACACTGGTATTGACTTGACTCGCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0043621

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

350

Amino Acids

35.74

Weight (kDa)

10.09

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63470 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480 AT1G63480
fragaria_vesca	FvH4_5g02200
malus_domestica	MD06G1081700.v1.1
prunus_persica	Prupe.5G098800_v2.0.a1
pyrus_communis	pycom06g07860 pycom14g09940
rosa_chinensis	RchiOBHm_Chr7g0197931
rosa_laevigata	RLG00000003902
rosa_multiflora	Rmu_co8232119.1_g000001 Rmu_co8341275.1_g000001 Rmu_sc0001082.1_g000013 Rmu_sc0016104.1_g000006
rosa_roxburghii	Rroxscaffold_3G00258100
rosa_rugosa	Rorug07G0044500 Rorug07G0044500 Rorug07G0044600
rosa_samantha	Rh7AG168200 Rh7BG171000 Rh7CG177600 Rh7DG170200
rosa_wichuraiana	Rw7G014670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	963
Acc36I	ACCTGC	1 cut(s)	811
AccII	CGCG	4 cut(s)	404, 627, 997, 1044
AciI	CCGC	6 cut(s)	102, 105, 111, 402, 997, 1044
AclWI	GGATC	2 cut(s)	97, 205
AcoI	YGGCCR	1 cut(s)	1018
AcsI	RAATTY	1 cut(s)	898
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	2 cut(s)	250, 698
AfiI	CCNNNNNNNGG	3 cut(s)	180, 383, 434
AgsI	TTSAA	3 cut(s)	222, 236, 390
AjnI	CCWGG	3 cut(s)	85, 427, 988
AjuI	GAANNNNNNNTTGG	4 cut(s)	434, 466, 857, 889
AluBI	AGCT	5 cut(s)	41, 189, 281, 494, 852
AluI	AGCT	5 cut(s)	41, 189, 281, 494, 852
Alw26I	GTCTC	2 cut(s)	357, 562
AlwI	GGATC	2 cut(s)	97, 205
AoxI	GGCC	7 cut(s)	140, 308, 322, 332, 422, 986, 1018
ApeKI	GCWGC	4 cut(s)	125, 455, 539, 806
ApoI	RAATTY	1 cut(s)	898
AspLEI	GCGC	2 cut(s)	274, 580
AspS9I	GGNCC	6 cut(s)	141, 309, 323, 332, 719, 881
AsuC2I	CCSGG	3 cut(s)	267, 313, 384
AsuHPI	GGTGA	2 cut(s)	110, 505
AvaII	GGWCC	2 cut(s)	719, 881
BaeGI	GKGCMC	1 cut(s)	946
BalI	TGGCCA	1 cut(s)	1020
BbsI	GAAGAC	2 cut(s)	603, 863
BbvI	GCAGC	4 cut(s)	112, 442, 551, 818
BccI	CCATC	3 cut(s)	152, 323, 707
BciT130I	CCWGG	3 cut(s)	87, 429, 990
BcnI	CCSGG	3 cut(s)	267, 313, 384
BcoDI	GTCTC	2 cut(s)	357, 562
BfoI	RGCGCY	2 cut(s)	275, 581
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	6 cut(s)	103, 126, 456, 540, 807, 998
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	6 cut(s)	104, 127, 457, 541, 808, 999
Bme1390I	CCNGG	6 cut(s)	87, 267, 313, 384, 429, 990
Bme18I	GGWCC	2 cut(s)	719, 881
BmgT120I	GGNCC	6 cut(s)	141, 309, 323, 332, 719, 881
BmiI	GGNNCC	5 cut(s)	216, 311, 325, 671, 883
BmrFI	CCNGG	6 cut(s)	87, 267, 313, 384, 429, 990
BmsI	GCATC	1 cut(s)	644
BpiI	GAAGAC	2 cut(s)	603, 863
BpmI	CTGGAG	1 cut(s)	798
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuMI	CCSGG	3 cut(s)	267, 313, 384
BsaI	GGTCTC	1 cut(s)	562
BsaJI	CCNNGG	4 cut(s)	311, 428, 572, 708
BsaWI	WCCGGW	1 cut(s)	971
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 358, 388
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 383, 434
Bse1I	ACTGG	4 cut(s)	335, 646, 815, 1030
Bse3DI	GCAATG	2 cut(s)	24, 534
BseBI	CCWGG	3 cut(s)	87, 429, 990
BseDI	CCNNGG	4 cut(s)	311, 428, 572, 708
BseGI	GGATG	4 cut(s)	10, 159, 477, 718
BseLI	CCNNNNNNNGG	3 cut(s)	180, 383, 434
BseMI	GCAATG	2 cut(s)	24, 534
BseMII	CTCAG	3 cut(s)	182, 222, 296
BseNI	ACTGG	4 cut(s)	335, 646, 815, 1030
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	4 cut(s)	112, 442, 551, 818
BsgI	GTGCAG	4 cut(s)	111, 624, 839, 996
Bsh1236I	CGCG	4 cut(s)	404, 627, 997, 1044
Bsh1285I	CGRYCG	1 cut(s)	402
BshFI	GGCC	7 cut(s)	142, 310, 324, 334, 424, 988, 1020
BsiEI	CGRYCG	1 cut(s)	402
BsiSI	CCGG	4 cut(s)	267, 313, 383, 972
BslFI	GGGAC	1 cut(s)	867
BslI	CCNNNNNNNGG	3 cut(s)	180, 383, 434
BsmAI	GTCTC	2 cut(s)	357, 562
BsmFI	GGGAC	1 cut(s)	867
BsnI	GGCC	7 cut(s)	142, 310, 324, 334, 424, 988, 1020
Bso31I	GGTCTC	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	946
Bsp143I	GATC	2 cut(s)	89, 197
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	6 cut(s)	102, 105, 111, 402, 997, 1044
BspANI	GGCC	7 cut(s)	142, 310, 324, 334, 424, 988, 1020
BspCNI	CTCAG	3 cut(s)	181, 221, 295
BspFNI	CGCG	4 cut(s)	404, 627, 997, 1044
BspLI	GGNNCC	5 cut(s)	216, 311, 325, 671, 883
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	2 cut(s)	97, 205
BspTNI	GGTCTC	1 cut(s)	562
BsrDI	GCAATG	2 cut(s)	24, 534
BsrI	ACTGG	4 cut(s)	335, 646, 815, 1030
BssECI	CCNNGG	4 cut(s)	311, 428, 572, 708
BssMI	GATC	2 cut(s)	89, 197
BssT1I	CCWWGG	1 cut(s)	572
Bst2UI	CCWGG	3 cut(s)	87, 429, 990
Bst4CI	ACNGT	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	826
BstC8I	GCNNGC	5 cut(s)	100, 629, 633, 979, 995
BstDEI	CTNAG	4 cut(s)	168, 208, 282, 700
BstF5I	GGATG	4 cut(s)	10, 159, 477, 718
BstFNI	CGCG	4 cut(s)	404, 627, 997, 1044
BstH2I	RGCGCY	2 cut(s)	275, 581
BstHHI	GCGC	2 cut(s)	274, 580
BstKTI	GATC	2 cut(s)	92, 200
BstMAI	GTCTC	2 cut(s)	357, 562
BstMBI	GATC	2 cut(s)	89, 197
BstMCI	CGRYCG	1 cut(s)	402
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 278, 491, 826, 994
BstNI	CCWGG	3 cut(s)	87, 429, 990
BstSCI	CCNGG	6 cut(s)	85, 265, 311, 382, 427, 988
BstSLI	GKGCMC	1 cut(s)	946
BstUI	CGCG	4 cut(s)	404, 627, 997, 1044
BstV1I	GCAGC	4 cut(s)	112, 442, 551, 818
BstV2I	GAAGAC	2 cut(s)	603, 863
BsuRI	GGCC	7 cut(s)	142, 310, 324, 334, 424, 988, 1020
BtsCI	GGATG	4 cut(s)	10, 159, 477, 718
BtsI	GCAGTG	3 cut(s)	612, 801, 946
BtsIMutI	CAGTG	7 cut(s)	216, 612, 655, 801, 822, 946, 1023
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	5 cut(s)	100, 629, 633, 979, 995
CfoI	GCGC	2 cut(s)	274, 580
Cfr13I	GGNCC	6 cut(s)	141, 309, 323, 332, 719, 881
Csp6I	GTAC	2 cut(s)	249, 697
CviAII	CATG	6 cut(s)	122, 242, 253, 358, 506, 773
CviQI	GTAC	2 cut(s)	249, 697
DdeI	CTNAG	4 cut(s)	168, 208, 282, 700
DpnI	GATC	2 cut(s)	91, 199
DpnII	GATC	2 cut(s)	89, 197
EaeI	YGGCCR	1 cut(s)	1018
EciI	GGCGGA	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	562
Eco47I	GGWCC	2 cut(s)	719, 881
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	898
EcoRII	CCWGG	3 cut(s)	85, 427, 988
EcoT14I	CCWWGG	1 cut(s)	572
EcoT22I	ATGCAT	1 cut(s)	587
ErhI	CCWWGG	1 cut(s)	572
FaeI	CATG	6 cut(s)	125, 245, 256, 361, 509, 776
FaqI	GGGAC	1 cut(s)	867
FatI	CATG	6 cut(s)	121, 241, 252, 357, 505, 772
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	6 cut(s)	103, 126, 456, 540, 807, 998
FokI	GGATG	4 cut(s)	17, 146, 484, 725
Fsp4HI	GCNGC	6 cut(s)	103, 126, 456, 540, 807, 998
GlaI	GCGC	2 cut(s)	273, 579
GluI	GCNGC	6 cut(s)	103, 126, 456, 540, 807, 998
GsuI	CTGGAG	1 cut(s)	798
HaeII	RGCGCY	2 cut(s)	275, 581
HaeIII	GGCC	7 cut(s)	142, 310, 324, 334, 424, 988, 1020
HapII	CCGG	4 cut(s)	267, 313, 383, 972
HhaI	GCGC	2 cut(s)	274, 580
Hin1II	CATG	6 cut(s)	125, 245, 256, 361, 509, 776
Hin6I	GCGC	2 cut(s)	272, 578
HinP1I	GCGC	2 cut(s)	272, 578
HinfI	GANTC	1 cut(s)	1039
HpaII	CCGG	4 cut(s)	267, 313, 383, 972
HphI	GGTGA	2 cut(s)	110, 505
Hpy166II	GTNNAC	1 cut(s)	719
Hpy188I	TCNGA	2 cut(s)	399, 904
Hpy188III	TCNNGA	3 cut(s)	222, 594, 673
Hpy8I	GTNNAC	1 cut(s)	719
Hpy99I	CGWCG	1 cut(s)	896
HpyAV	CCTTC	2 cut(s)	228, 285
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 278, 491, 826, 994
HpyF3I	CTNAG	4 cut(s)	168, 208, 282, 700
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	6 cut(s)	125, 245, 256, 361, 509, 776
HspAI	GCGC	2 cut(s)	272, 578
Kzo9I	GATC	2 cut(s)	89, 197
LmnI	GCTCC	2 cut(s)	214, 269
Lsp1109I	GCAGC	4 cut(s)	112, 442, 551, 818
LweI	GCATC	1 cut(s)	644
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	3 cut(s)	259, 616, 652
MalI	GATC	2 cut(s)	91, 199
MboI	GATC	2 cut(s)	89, 197
MboII	GAAGA	3 cut(s)	307, 603, 868
MfeI	CAATTG	1 cut(s)	872
MhlI	GDGCHC	1 cut(s)	946
MlsI	TGGCCA	1 cut(s)	1020
MluCI	AATT	6 cut(s)	229, 545, 872, 898, 923, 958
MluNI	TGGCCA	1 cut(s)	1020
MlyI	GAGTC	1 cut(s)	1033
MmeI	TCCRAC	3 cut(s)	187, 422, 505
Mox20I	TGGCCA	1 cut(s)	1020
Mph1103I	ATGCAT	1 cut(s)	587
MscI	TGGCCA	1 cut(s)	1020
Msp20I	TGGCCA	1 cut(s)	1020
MspI	CCGG	4 cut(s)	267, 313, 383, 972
MspR9I	CCNGG	6 cut(s)	87, 267, 313, 384, 429, 990
MunI	CAATTG	1 cut(s)	872
MvaI	CCWGG	3 cut(s)	87, 429, 990
MvnI	CGCG	4 cut(s)	404, 627, 997, 1044
MwoI	GCNNNNNNNGC	5 cut(s)	108, 278, 491, 826, 994
NciI	CCSGG	3 cut(s)	267, 313, 384
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	2 cut(s)	89, 197
NlaIII	CATG	6 cut(s)	125, 245, 256, 361, 509, 776
NlaIV	GGNNCC	5 cut(s)	216, 311, 325, 671, 883
NmeAIII	GCCGAG	1 cut(s)	733
NmuCI	GTSAC	2 cut(s)	259, 652
NsiI	ATGCAT	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	1 cut(s)	900
PfoI	TCCNGGA	2 cut(s)	85, 265
PkrI	GCNGC	6 cut(s)	104, 127, 457, 541, 808, 999
PleI	GAGTC	1 cut(s)	1033
PpsI	GAGTC	1 cut(s)	1033
PsiI	TTATAA	1 cut(s)	963
Psp6I	CCWGG	3 cut(s)	85, 427, 988
PspGI	CCWGG	3 cut(s)	85, 427, 988
PspN4I	GGNNCC	5 cut(s)	216, 311, 325, 671, 883
PspPI	GGNCC	6 cut(s)	141, 309, 323, 332, 719, 881
RsaI	GTAC	2 cut(s)	250, 698
RsaNI	GTAC	2 cut(s)	249, 697
SatI	GCNGC	6 cut(s)	103, 126, 456, 540, 807, 998
Sau3AI	GATC	2 cut(s)	89, 197
Sau96I	GGNCC	6 cut(s)	141, 309, 323, 332, 719, 881
SchI	GAGTC	1 cut(s)	1033
ScrFI	CCNGG	6 cut(s)	87, 267, 313, 384, 429, 990
SduI	GDGCHC	1 cut(s)	946
SfaNI	GCATC	1 cut(s)	644
SinI	GGWCC	2 cut(s)	719, 881
Sse9I	AATT	6 cut(s)	229, 545, 872, 898, 923, 958
SsiI	CCGC	6 cut(s)	102, 105, 111, 402, 997, 1044
StyD4I	CCNGG	6 cut(s)	85, 265, 311, 382, 427, 988
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	2 cut(s)	730, 854
TasI	AATT	6 cut(s)	229, 545, 872, 898, 923, 958
TauI	GCSGC	2 cut(s)	105, 1000
TscAI	CASTG	7 cut(s)	216, 612, 655, 801, 822, 946, 1030
TseFI	GTSAC	2 cut(s)	259, 652
TseI	GCWGC	4 cut(s)	125, 455, 539, 806
Tsp45I	GTSAC	2 cut(s)	259, 652
TspDTI	ATGAA	3 cut(s)	33, 269, 488
TspRI	CASTG	7 cut(s)	216, 612, 655, 801, 822, 946, 1030
VpaK11BI	GGWCC	2 cut(s)	719, 881
XapI	RAATTY	1 cut(s)	898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.