negative regulation of Rho guanyl-nucleotide exchange factor activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 2 - 146 | 2.9e-50 | TIR domain |
| TIR_2 | PF13676 | 2 - 67 | 3.3e-07 | TIR domain |
| AAA_16 | PF13191 | 146 - 262 | 4.6e-06 | AAA ATPase domain |
| NB-ARC | PF00931 | 148 - 322 | 1.6e-16 | NB-ARC domain |
| ATPase_2 | PF01637 | 153 - 265 | 9.8e-09 | ATPase domain predominantly from Archaea |
| WHD_ROQ1 | PF23282 | 392 - 462 | 1e-11 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_EndoS | PF23952 | 564 - 648 | 6.3e-06 | Endo-beta-N-acetylglucosaminidase EndoS LRR domain |
| LRR_3 | PF07725 | 565 - 584 | 4e-08 | Leucine Rich Repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1007 |
| Acc16I | TGCGCA | 1 cut(s) | 215 |
| Acc36I | ACCTGC | 3 cut(s) | 515, 2417, 2473 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 977 |
| AccI | GTMKAC | 3 cut(s) | 565, 708, 1653 |
| AciI | CCGC | 3 cut(s) | 1373, 2468, 2663 |
| AclWI | GGATC | 3 cut(s) | 83, 194, 1188 |
| AcsI | RAATTY | 5 cut(s) | 1924, 2015, 2690, 2741, 2943 |
| AcuI | CTGAAG | 1 cut(s) | 803 |
| AfaI | GTAC | 2 cut(s) | 1146, 1602 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 343, 977, 2532, 2925, 2930 |
| AjiI | CACGTC | 1 cut(s) | 1577 |
| AjnI | CCWGG | 6 cut(s) | 450, 826, 1657, 2020, 2281, 2449 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2248, 2280, 2565, 2597 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2027, 2059 |
| Alw21I | GWGCWC | 4 cut(s) | 93, 968, 2280, 2481 |
| Alw26I | GTCTC | 7 cut(s) | 437, 1562, 1671, 1834, 2105, 2863, 2887 |
| Alw44I | GTGCAC | 1 cut(s) | 2477 |
| AlwI | GGATC | 3 cut(s) | 83, 194, 1188 |
| Ama87I | CYCGRG | 2 cut(s) | 1292, 2924 |
| AoxI | GGCC | 3 cut(s) | 28, 517, 1685 |
| ApaLI | GTGCAC | 1 cut(s) | 2477 |
| ApeKI | GCWGC | 2 cut(s) | 652, 1017 |
| ApoI | RAATTY | 5 cut(s) | 1924, 2015, 2690, 2741, 2943 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 242, 669, 1374 |
| AspLEI | GCGC | 2 cut(s) | 216, 1520 |
| AspS9I | GGNCC | 3 cut(s) | 518, 824, 1788 |
| AsuC2I | CCSGG | 2 cut(s) | 2925, 2926 |
| AsuHPI | GGTGA | 1 cut(s) | 2405 |
| AsuII | TTCGAA | 2 cut(s) | 984, 2385 |
| AvaI | CYCGRG | 2 cut(s) | 1292, 2924 |
| AvaII | GGWCC | 2 cut(s) | 824, 1788 |
| BaeGI | GKGCMC | 2 cut(s) | 2183, 2481 |
| BanII | GRGCYC | 1 cut(s) | 2280 |
| BauI | CACGAG | 1 cut(s) | 54 |
| BbsI | GAAGAC | 4 cut(s) | 178, 432, 2302, 2709 |
| Bbv12I | GWGCWC | 4 cut(s) | 93, 968, 2280, 2481 |
| BbvI | GCAGC | 2 cut(s) | 639, 1029 |
| BccI | CCATC | 8 cut(s) | 211, 282, 358, 971, 1462, 2513, 2703, 2867 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 70, 104, 1489, 1523 |
| BciT130I | CCWGG | 6 cut(s) | 452, 828, 1659, 2022, 2283, 2451 |
| BciVI | GTATCC | 1 cut(s) | 2795 |
| BclI | TGATCA | 2 cut(s) | 10, 1231 |
| BcnI | CCSGG | 2 cut(s) | 2925, 2926 |
| BcoDI | GTCTC | 7 cut(s) | 437, 1562, 1671, 1834, 2105, 2863, 2887 |
| BfaI | CTAG | 8 cut(s) | 414, 791, 1031, 1103, 1727, 1844, 1907, 2765 |
| BfmI | CTRYAG | 2 cut(s) | 522, 2487 |
| BfuAI | ACCTGC | 3 cut(s) | 515, 2417, 2473 |
| BfuI | GTATCC | 1 cut(s) | 2795 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2622 |
| BglII | AGATCT | 4 cut(s) | 936, 1813, 1846, 2215 |
| BisI | GCNGC | 2 cut(s) | 653, 1018 |
| BlsI | GCNGC | 2 cut(s) | 654, 1019 |
| BmcAI | AGTACT | 1 cut(s) | 1146 |
| Bme1390I | CCNGG | 8 cut(s) | 452, 828, 1659, 2022, 2283, 2451, 2925, 2926 |
| Bme18I | GGWCC | 2 cut(s) | 824, 1788 |
| BmeT110I | CYCGRG | 2 cut(s) | 1292, 2924 |
| BmgBI | CACGTC | 1 cut(s) | 1577 |
| BmgT120I | GGNCC | 3 cut(s) | 518, 824, 1788 |
| BmiI | GGNNCC | 3 cut(s) | 293, 1747, 1789 |
| BmrFI | CCNGG | 8 cut(s) | 452, 828, 1659, 2022, 2283, 2451, 2925, 2926 |
| BmrI | ACTGGG | 2 cut(s) | 352, 1090 |
| BmsI | GCATC | 7 cut(s) | 1329, 1405, 1569, 1979, 1988, 2050, 2217 |
| BmuI | ACTGGG | 2 cut(s) | 352, 1090 |
| BpiI | GAAGAC | 4 cut(s) | 178, 432, 2302, 2709 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2843, 2875 |
| BpmI | CTGGAG | 2 cut(s) | 473, 1344 |
| Bpu14I | TTCGAA | 2 cut(s) | 984, 2385 |
| BpuEI | CTTGAG | 6 cut(s) | 1813, 1820, 2129, 2309, 2717, 2918 |
| BpuMI | CCSGG | 2 cut(s) | 2925, 2926 |
| BsaBI | GATNNNNATC | 2 cut(s) | 80, 2877 |
| BsaJI | CCNNGG | 6 cut(s) | 827, 1391, 1657, 2281, 2757, 2924 |
| BsaWI | WCCGGW | 1 cut(s) | 224 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 343, 977, 2532, 2925, 2930 |
| Bse1I | ACTGG | 4 cut(s) | 347, 700, 1085, 1858 |
| Bse3DI | GCAATG | 5 cut(s) | 318, 543, 1200, 1251, 2070 |
| Bse8I | GATNNNNATC | 2 cut(s) | 80, 2877 |
| BseBI | CCWGG | 6 cut(s) | 452, 828, 1659, 2022, 2283, 2451 |
| BseDI | CCNNGG | 6 cut(s) | 827, 1391, 1657, 2281, 2757, 2924 |
| BseGI | GGATG | 7 cut(s) | 133, 1995, 2003, 2042, 2505, 2714, 2753 |
| BseJI | GATNNNNATC | 2 cut(s) | 80, 2877 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 343, 977, 2532, 2925, 2930 |
| BseMI | GCAATG | 5 cut(s) | 318, 543, 1200, 1251, 2070 |
| BseMII | CTCAG | 3 cut(s) | 932, 1999, 2305 |
| BseNI | ACTGG | 4 cut(s) | 347, 700, 1085, 1858 |
| BseRI | GAGGAG | 2 cut(s) | 287, 1187 |
| BseSI | GKGCMC | 2 cut(s) | 2183, 2481 |
| BseXI | GCAGC | 2 cut(s) | 639, 1029 |
| BseYI | CCCAGC | 2 cut(s) | 1749, 2001 |
| Bsh1285I | CGRYCG | 1 cut(s) | 84 |
| BshFI | GGCC | 3 cut(s) | 30, 519, 1687 |
| BsiEI | CGRYCG | 1 cut(s) | 84 |
| BsiHKAI | GWGCWC | 4 cut(s) | 93, 968, 2280, 2481 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1292, 2924 |
| BsiSI | CCGG | 3 cut(s) | 225, 324, 2925 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 343, 977, 2532, 2925, 2930 |
| BsmAI | GTCTC | 7 cut(s) | 437, 1562, 1671, 1834, 2105, 2863, 2887 |
| BsmI | GAATGC | 2 cut(s) | 738, 1205 |
| BsnI | GGCC | 3 cut(s) | 30, 519, 1687 |
| BsoBI | CYCGRG | 2 cut(s) | 1292, 2924 |
| Bsp119I | TTCGAA | 2 cut(s) | 984, 2385 |
| Bsp1286I | GDGCHC | 5 cut(s) | 93, 968, 2183, 2280, 2481 |
| BspACI | CCGC | 3 cut(s) | 1373, 2468, 2663 |
| BspANI | GGCC | 3 cut(s) | 30, 519, 1687 |
| BspCNI | CTCAG | 3 cut(s) | 931, 1998, 2304 |
| BspHI | TCATGA | 1 cut(s) | 1420 |
| BspLI | GGNNCC | 3 cut(s) | 293, 1747, 1789 |
| BspMAI | CTGCAG | 1 cut(s) | 526 |
| BspMI | ACCTGC | 3 cut(s) | 515, 2417, 2473 |
| BspPI | GGATC | 3 cut(s) | 83, 194, 1188 |
| BspT104I | TTCGAA | 2 cut(s) | 984, 2385 |
| BsrDI | GCAATG | 5 cut(s) | 318, 543, 1200, 1251, 2070 |
| BsrI | ACTGG | 4 cut(s) | 347, 700, 1085, 1858 |
| BssECI | CCNNGG | 6 cut(s) | 827, 1391, 1657, 2281, 2757, 2924 |
| BssNAI | GTATAC | 2 cut(s) | 709, 1654 |
| BssSI | CACGAG | 1 cut(s) | 54 |
| BssT1I | CCWWGG | 1 cut(s) | 1391 |
| Bst1107I | GTATAC | 2 cut(s) | 709, 1654 |
| Bst2BI | CACGAG | 1 cut(s) | 54 |
| Bst2UI | CCWGG | 6 cut(s) | 452, 828, 1659, 2022, 2283, 2451 |
| Bst4CI | ACNGT | 7 cut(s) | 184, 465, 563, 1166, 2305, 2332, 2612 |
| Bst6I | CTCTTC | 3 cut(s) | 272, 1674, 1905 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1250 |
| BstBI | TTCGAA | 2 cut(s) | 984, 2385 |
| BstC8I | GCNNGC | 2 cut(s) | 1251, 1508 |
| BstF5I | GGATG | 7 cut(s) | 133, 1995, 2003, 2042, 2505, 2714, 2753 |
| BstHHI | GCGC | 2 cut(s) | 216, 1520 |
| BstMAI | GTCTC | 7 cut(s) | 437, 1562, 1671, 1834, 2105, 2863, 2887 |
| BstMCI | CGRYCG | 1 cut(s) | 84 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 871, 1250, 1732, 2622 |
| BstNI | CCWGG | 6 cut(s) | 452, 828, 1659, 2022, 2283, 2451 |
| BstSCI | CCNGG | 8 cut(s) | 450, 826, 1657, 2020, 2281, 2449, 2923, 2924 |
| BstSFI | CTRYAG | 2 cut(s) | 522, 2487 |
| BstSLI | GKGCMC | 2 cut(s) | 2183, 2481 |
| BstV1I | GCAGC | 2 cut(s) | 639, 1029 |
| BstV2I | GAAGAC | 4 cut(s) | 178, 432, 2302, 2709 |
| BstX2I | RGATCY | 6 cut(s) | 75, 199, 936, 1813, 1846, 2215 |
| BstYI | RGATCY | 6 cut(s) | 75, 199, 936, 1813, 1846, 2215 |
| BstZ17I | GTATAC | 2 cut(s) | 709, 1654 |
| BsuI | GTATCC | 1 cut(s) | 2795 |
| BsuRI | GGCC | 3 cut(s) | 30, 519, 1687 |
| BtrI | CACGTC | 1 cut(s) | 1577 |
| BtsCI | GGATG | 7 cut(s) | 133, 1995, 2003, 2042, 2505, 2714, 2753 |
| BtsI | GCAGTG | 2 cut(s) | 2137, 2267 |
| BtsIMutI | CAGTG | 2 cut(s) | 2137, 2267 |
| BveI | ACCTGC | 3 cut(s) | 515, 2417, 2473 |
| Cac8I | GCNNGC | 2 cut(s) | 1251, 1508 |
| CciI | TCATGA | 1 cut(s) | 1420 |
| CfoI | GCGC | 2 cut(s) | 216, 1520 |
| Cfr13I | GGNCC | 3 cut(s) | 518, 824, 1788 |
| Cfr9I | CCCGGG | 1 cut(s) | 2924 |
| Csp6I | GTAC | 2 cut(s) | 1145, 1601 |
| CviAII | CATG | 8 cut(s) | 430, 878, 1045, 1172, 1235, 1421, 1612, 2951 |
| CviQI | GTAC | 2 cut(s) | 1145, 1601 |
| DraI | TTTAAA | 2 cut(s) | 687, 958 |
| Eam1104I | CTCTTC | 3 cut(s) | 272, 1674, 1905 |
| EarI | CTCTTC | 3 cut(s) | 272, 1674, 1905 |
| Ecl136II | GAGCTC | 1 cut(s) | 2278 |
| Eco130I | CCWWGG | 1 cut(s) | 1391 |
| Eco24I | GRGCYC | 1 cut(s) | 2280 |
| Eco32I | GATATC | 2 cut(s) | 232, 2879 |
| Eco47I | GGWCC | 2 cut(s) | 824, 1788 |
| Eco53kI | GAGCTC | 1 cut(s) | 2278 |
| Eco57I | CTGAAG | 1 cut(s) | 803 |
| Eco88I | CYCGRG | 2 cut(s) | 1292, 2924 |
| EcoICRI | GAGCTC | 1 cut(s) | 2278 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1788 |
| EcoRI | GAATTC | 1 cut(s) | 2690 |
| EcoRII | CCWGG | 6 cut(s) | 450, 826, 1657, 2020, 2281, 2449 |
| EcoRV | GATATC | 2 cut(s) | 232, 2879 |
| EcoT14I | CCWWGG | 1 cut(s) | 1391 |
| EcoT38I | GRGCYC | 1 cut(s) | 2280 |
| ErhI | CCWWGG | 1 cut(s) | 1391 |
| FaeI | CATG | 8 cut(s) | 433, 881, 1048, 1175, 1238, 1424, 1615, 2954 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 654, 686, 1233, 1265, 2064, 2096 |
| FatI | CATG | 8 cut(s) | 429, 877, 1044, 1171, 1234, 1420, 1611, 2950 |
| FbaI | TGATCA | 2 cut(s) | 10, 1231 |
| FblI | GTMKAC | 3 cut(s) | 565, 708, 1653 |
| Fnu4HI | GCNGC | 2 cut(s) | 653, 1018 |
| FokI | GGATG | 7 cut(s) | 140, 2002, 2010, 2029, 2492, 2721, 2740 |
| FriOI | GRGCYC | 1 cut(s) | 2280 |
| Fsp4HI | GCNGC | 2 cut(s) | 653, 1018 |
| FspBI | CTAG | 8 cut(s) | 414, 791, 1031, 1103, 1727, 1844, 1907, 2765 |
| FspI | TGCGCA | 1 cut(s) | 215 |
| GlaI | GCGC | 2 cut(s) | 215, 1519 |
| GluI | GCNGC | 2 cut(s) | 653, 1018 |
| GsaI | CCCAGC | 2 cut(s) | 1753, 2005 |
| GsuI | CTGGAG | 2 cut(s) | 473, 1344 |
| HaeIII | GGCC | 3 cut(s) | 30, 519, 1687 |
| HapII | CCGG | 3 cut(s) | 225, 324, 2925 |
| HhaI | GCGC | 2 cut(s) | 216, 1520 |
| Hin1II | CATG | 8 cut(s) | 433, 881, 1048, 1175, 1238, 1424, 1615, 2954 |
| Hin6I | GCGC | 2 cut(s) | 214, 1518 |
| HinP1I | GCGC | 2 cut(s) | 214, 1518 |
| HincII | GTYRAC | 1 cut(s) | 2502 |
| HindII | GTYRAC | 1 cut(s) | 2502 |
| HindIII | AAGCTT | 5 cut(s) | 297, 795, 1010, 1524, 1733 |
| HpaII | CCGG | 3 cut(s) | 225, 324, 2925 |
| HphI | GGTGA | 1 cut(s) | 2405 |
| HpyAV | CCTTC | 6 cut(s) | 1171, 1683, 1736, 1795, 1890, 2448 |
| HpyCH4III | ACNGT | 7 cut(s) | 184, 465, 563, 1166, 2305, 2332, 2612 |
| HpyCH4IV | ACGT | 1 cut(s) | 1576 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 871, 1250, 1732, 2622 |
| HpySE526I | ACGT | 1 cut(s) | 1576 |
| Hsp92II | CATG | 8 cut(s) | 433, 881, 1048, 1175, 1238, 1424, 1615, 2954 |
| HspAI | GCGC | 2 cut(s) | 214, 1518 |
| Ksp22I | TGATCA | 2 cut(s) | 10, 1231 |
| LmnI | GCTCC | 4 cut(s) | 291, 2283, 2528, 2652 |
| Lsp1109I | GCAGC | 2 cut(s) | 639, 1029 |
| LweI | GCATC | 7 cut(s) | 1329, 1405, 1569, 1979, 1988, 2050, 2217 |
| MaeI | CTAG | 8 cut(s) | 414, 791, 1031, 1103, 1727, 1844, 1907, 2765 |
| MaeII | ACGT | 1 cut(s) | 1576 |
| MaeIII | GTNAC | 4 cut(s) | 471, 844, 1347, 2158 |
| MfeI | CAATTG | 2 cut(s) | 1184, 2355 |
| MflI | RGATCY | 6 cut(s) | 75, 199, 936, 1813, 1846, 2215 |
| MhlI | GDGCHC | 5 cut(s) | 93, 968, 2183, 2280, 2481 |
| MlyI | GAGTC | 4 cut(s) | 1161, 1269, 1948, 2107 |
| MmeI | TCCRAC | 8 cut(s) | 117, 487, 1135, 1755, 1841, 1870, 1896, 1976 |
| MroXI | GAANNNNTTC | 3 cut(s) | 242, 669, 1374 |
| MspI | CCGG | 3 cut(s) | 225, 324, 2925 |
| MspR9I | CCNGG | 8 cut(s) | 452, 828, 1659, 2022, 2283, 2451, 2925, 2926 |
| MunI | CAATTG | 2 cut(s) | 1184, 2355 |
| Mva1269I | GAATGC | 2 cut(s) | 738, 1205 |
| MvaI | CCWGG | 6 cut(s) | 452, 828, 1659, 2022, 2283, 2451 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 871, 1250, 1732, 2622 |
| NciI | CCSGG | 2 cut(s) | 2925, 2926 |
| NlaIII | CATG | 8 cut(s) | 433, 881, 1048, 1175, 1238, 1424, 1615, 2954 |
| NlaIV | GGNNCC | 3 cut(s) | 293, 1747, 1789 |
| NmuCI | GTSAC | 1 cut(s) | 844 |
| NsbI | TGCGCA | 1 cut(s) | 215 |
| NspV | TTCGAA | 2 cut(s) | 984, 2385 |
| PaeR7I | CTCGAG | 1 cut(s) | 1292 |
| PagI | TCATGA | 1 cut(s) | 1420 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 77 |
| PctI | GAATGC | 2 cut(s) | 738, 1205 |
| PdmI | GAANNNNTTC | 3 cut(s) | 242, 669, 1374 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 977 |
| PkrI | GCNGC | 2 cut(s) | 654, 1019 |
| Ple19I | CGATCG | 1 cut(s) | 84 |
| PleI | GAGTC | 4 cut(s) | 1160, 1269, 1948, 2107 |
| PpsI | GAGTC | 4 cut(s) | 1160, 1269, 1948, 2107 |
| PpuMI | RGGWCCY | 1 cut(s) | 1788 |
| PsiI | TTATAA | 1 cut(s) | 1007 |
| Psp124BI | GAGCTC | 1 cut(s) | 2280 |
| Psp5II | RGGWCCY | 1 cut(s) | 1788 |
| Psp6I | CCWGG | 6 cut(s) | 450, 826, 1657, 2020, 2281, 2449 |
| PspFI | CCCAGC | 2 cut(s) | 1749, 2001 |
| PspGI | CCWGG | 6 cut(s) | 450, 826, 1657, 2020, 2281, 2449 |
| PspN4I | GGNNCC | 3 cut(s) | 293, 1747, 1789 |
| PspPI | GGNCC | 3 cut(s) | 518, 824, 1788 |
| PspPPI | RGGWCCY | 1 cut(s) | 1788 |
| PstI | CTGCAG | 1 cut(s) | 526 |
| PsuI | RGATCY | 6 cut(s) | 75, 199, 936, 1813, 1846, 2215 |
| PvuI | CGATCG | 1 cut(s) | 84 |
| RsaI | GTAC | 2 cut(s) | 1146, 1602 |
| RsaNI | GTAC | 2 cut(s) | 1145, 1601 |
| SacI | GAGCTC | 1 cut(s) | 2280 |
| SatI | GCNGC | 2 cut(s) | 653, 1018 |
| Sau96I | GGNCC | 3 cut(s) | 518, 824, 1788 |
| SbfI | CCTGCAGG | 1 cut(s) | 526 |
| ScaI | AGTACT | 1 cut(s) | 1146 |
| SchI | GAGTC | 4 cut(s) | 1161, 1269, 1948, 2107 |
| ScrFI | CCNGG | 8 cut(s) | 452, 828, 1659, 2022, 2283, 2451, 2925, 2926 |
| SdaI | CCTGCAGG | 1 cut(s) | 526 |
| SduI | GDGCHC | 5 cut(s) | 93, 968, 2183, 2280, 2481 |
| SfaNI | GCATC | 7 cut(s) | 1329, 1405, 1569, 1979, 1988, 2050, 2217 |
| SfcI | CTRYAG | 2 cut(s) | 522, 2487 |
| Sfr274I | CTCGAG | 1 cut(s) | 1292 |
| SfuI | TTCGAA | 2 cut(s) | 984, 2385 |
| SinI | GGWCC | 2 cut(s) | 824, 1788 |
| SlaI | CTCGAG | 1 cut(s) | 1292 |
| SmaI | CCCGGG | 1 cut(s) | 2926 |
| SmlI | CTYRAG | 8 cut(s) | 1292, 1792, 1835, 2108, 2324, 2696, 2897, 2959 |
| SmoI | CTYRAG | 8 cut(s) | 1292, 1792, 1835, 2108, 2324, 2696, 2897, 2959 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 526 |
| SsiI | CCGC | 3 cut(s) | 1373, 2468, 2663 |
| SspMI | CTAG | 8 cut(s) | 414, 791, 1031, 1103, 1727, 1844, 1907, 2765 |
| SstI | GAGCTC | 1 cut(s) | 2280 |
| StyD4I | CCNGG | 8 cut(s) | 450, 826, 1657, 2020, 2281, 2449, 2923, 2924 |
| StyI | CCWWGG | 1 cut(s) | 1391 |
| TaaI | ACNGT | 7 cut(s) | 184, 465, 563, 1166, 2305, 2332, 2612 |
| TaiI | ACGT | 1 cut(s) | 1579 |
| TatI | WGTACW | 1 cut(s) | 1144 |
| TscAI | CASTG | 2 cut(s) | 2137, 2274 |
| TseFI | GTSAC | 1 cut(s) | 844 |
| TseI | GCWGC | 2 cut(s) | 652, 1017 |
| Tsp45I | GTSAC | 1 cut(s) | 844 |
| TspDTI | ATGAA | 9 cut(s) | 99, 366, 507, 822, 1937, 2502, 2582, 2853, 2939 |
| TspGWI | ACGGA | 6 cut(s) | 207, 284, 2419, 2498, 2639, 2721 |
| TspMI | CCCGGG | 1 cut(s) | 2924 |
| TspRI | CASTG | 2 cut(s) | 2137, 2274 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 977 |
| VneI | GTGCAC | 1 cut(s) | 2477 |
| VpaK11BI | GGWCC | 2 cut(s) | 824, 1788 |
| XapI | RAATTY | 5 cut(s) | 1924, 2015, 2690, 2741, 2943 |
| XhoI | CTCGAG | 1 cut(s) | 1292 |
| XmaI | CCCGGG | 1 cut(s) | 2924 |
| XmiI | GTMKAC | 3 cut(s) | 565, 708, 1653 |
| XmnI | GAANNNNTTC | 3 cut(s) | 242, 669, 1374 |
| XspI | CTAG | 8 cut(s) | 414, 791, 1031, 1103, 1727, 1844, 1907, 2765 |
| ZrmI | AGTACT | 1 cut(s) | 1146 |