Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001561

Physical Location & Seq

Genomic Coordinates Forward (+)

16394462 .. 16400489

Gene Structure 6028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3315 bp

ATGGCTTTTTCATCACCGTCTGACTTCAAGAGATACCATGTCTTTTCGAGTTTCCATGGACCAGATGTCCGTAGTGGATTTCTCAGTCATTTACACAATCACTTCGAAAGCAAAGGGATCACTCCGTTCAAGGATCAAGAGATCGAGAGAGGCCATACGATCGGACCTGAGCTCATACAAGCGATTAGAGAATCTAGAGTCTCGATTGTGGTGCTTTCAGAGAAGTACGCTTCTTCGTGCTGGTGCTTAGATGAGTTGGTGGAAATCTTGAAGTGCAAAGAAGCTTCGGGGCAAGTTGTGATGACTATTTTTTACAAAGTTGATCCGTCCGATGTACGGAAACAGCGGGGAGACTTCGGAAGTACTTTCAAGAAAACATGTGAAGGGAAAACCTGGATAGTGAAGCAGAGATGGATCAAAGCTTTGGAATATATAGCAACCGTAGCTGGAGAACACTCTCTAAGCTGGGCTAATGAAGCAGAGTTGATCCAAAAGATTGCTACAGATGTTTCAAACAAACTTAATCTTACACCGTCGAGGGATTTTGAGGGGATGGTGGGACTTGAAGCTCATTTGACAAAACTGGACTCTTTTTTATGCCTTGAGAGTGATGATGTAAAGATGATTGGCATTTGGGGTCCTGCTGGAATTGGTAAGACTACCATTGCTAGAGCTTTATTTAACCAACTCTCTACCGGTTTTCGGCTTAGTTGTTTTATGGGGACCATTGATGTTAATGACTATGATTCGAAGTTGTGTTTGCAAAACAAGCTTCTGTCCAAAATTTTGAACCAAAAGGATATGAAGATACATCATTTAGGCGCAATTGAAGAATGGCTACATAACCAAAGAGTTCTTATAGTTCTTGATGATGTGGATGATCTAGAGCAACTAGAGGTATTGGCTAAAGAAAGTTCTTGGTTCGGTCATGGAAGTCGGATCATTGTTTCCTTAAATGATAGAAAGATTTTGAAGGCACATGGGATCAACGATATCTACGATGTGGATTTTCCATCCGAAGAAGAAGCTCTTGAGATCTTATGTCTATCTGCTTTCAAACAAAATTCTCCACAAGATGGTTTTGAAGAGGTTGCAAAAAGAGTAGTAGAGCTTTGCGGTAAGCTTCCATTGGGCCTTCGTGTTGTGGGTTCTTCTTTTTATGGGGAGAGCGAGGATGAGTGGAGAATTCAATTATATGGAATTGAAACTAATCTTGATAGGAAAATTGAGAATGTCTTGAGAGTGGGATATGACAAATTGTCGGAGCGACATCAATCTTTGTTTCTTCATATTGCATGCTTTTTCAACCATAAAAGTGTTGATTATGTGACAACCATGCTCGCTGACAGTACTTTGGATGTCGAAAATGGGTTAAAGACCTTAGCCGCTAAATCTCTTGTGTCTACTAATGGATGGATAACGATGCACTGTCTACTACAACAATTGGGTAGACAAGTTGTTGTTCAACAGGGTGACCCGGGGAAACGTCAGTTTTTAGTAGAGGCCAAAGAGATTCGCGATGTCTTGGCAAATGAAACAGGTACTGAATCCGTCATAGGTATATCGTTTGACATTTCGAAGATCGAGACGTTATCTATAAGCAAGCGAGCCTTTAATAGAATGCGTAATCTCAAATTCTTAAATTTCTATAATGGAAGTGTTAGCTTGTTAGAGGACATGGAATATCTACCTCGTCTAAGGTTACTTTATTGGGGTTCATACCCGAGAAAAAGTCTTCCTCTGACATTTAAGCCAGAATGTCTCGTCGAACTCTATATGGGATTCAGCAAGTTGGAGAAGCTATGGGGAGGAATCCAGCCCCTCACAAATCTAAAGAAAATAAATTTGGGATATTCCTCTAATTTGAAAGAAATCCCAAATCTTTCGAAAGCCACTAACCTCAAGACGTTGACGCTTACCGGTTGTGAGAGTTTGGTGGAGATTCCATCCTCTATTTGGAATCTACAGAAACTGGAAATGCTGTATGCGTCAGGATGCATTAAGCTACAAGTTATTCCCACCAACATCAACTTAGCATCTCTTGAGGAAGTCAACATGAGTAATTGCTCACGTCTGAGAAGTTTTCCAGATATATCTAGTAACATTAAGCGTCTCTATGTAGCAGGCACAATGATTAAAGAATTTCCTGCATCCATTGTTGGACACTGGTGTCGTCTTGATTTTCTTCAGATAGGCAGCAGAAGCCTCAAGAGATTAACACATGTCCCAGAGAGTGTAACACATCTAGACCTACGCAACAGTGATATAAAGATGATCCCAGATTGCGTCATAGGTCTTCCGCATCTAGTATCTCTTCTCGTCGAAAACTGCACAAAACTGGTGTCAATTCAGGGTCATTCCCCTTCGCTGGTGACCCTATTTGCAGACCACTGTATATCACTCAAGAGCGTATGCTGCTCTTTCCACGGACCAATCTCGAAATTGATGTTCTACAACTGTCTGAAACTGGATAAGGAATCAAAAAGAGGAATCATACAACAATCGGGTAACAAGTCTATATGCTTGCCAGGTAAAGAAATCCCTGCAGAGTTCACTCACCAAACTATAGGGAACTTGATAACCATCTCCCTGGCTCCAGGTTGTGAGGAGGCTTATTCTACGTTCTCAAGATTTAAGGCTTGCCTCCTGCTTTCGCCAATCAAGAATTTCGCATTTAATAAGATAAATTGTTTTCTAAGAAGCAAAGGTGTCGAAATTAGTCGCACTACAGAGTCTATATATCCTTTTGTGTCTGGTGGATCTCTATCAGAACATCTGTTTATCTTTTGTGGCGACTTATTTCCTGAAGAAAACAGAAGCCTTATGGACGTGACTCCGAACGAGATTCTGTTTGATTTCAGCTCCAGTGATGTCGAGATTGTGGAATGTGGTGTAAAGATCTTTTTAAGTAGTGGCATTGAAGTGGGCTACTGTGAAACTGGAGGCAACAGAAACCACCACATAGATGGAGAAGCAGAAGCGTTTAAGGTAACTCAAGTTGAAAACAGTAAACATACAGGCCACTGGAGTTGGCTTAGGAAGCTTCGTCTGGGGAAGAAGAAGATGAAGAATAATAAGACAGAGCTTAGTTCGAGACCAGTCTCAGGATTTAGTGATCTTACTCGGGGAATCTTTATAAGGTATCAGGAGCCTGAAGCTGTTGAGCTCACTAAAGATGAAAGAATCACAGATCTTTCGAGTTTACTATGTATTGGTTCCCTTGTGGTCTGTTTTTTTCTTTCTGTTTTTTTCGGGCAACCCCTTGTGGTCTCTGTTTTGTTGCTTTTTTCTTGCTTCTTTCTTCAGATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009817 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0014070 GO:0019904 GO:0023052 GO:0030275 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_3 NB-ARC TIR

Protein Analysis

1104

Amino Acids

124.31

Weight (kDa)

6.77

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	5 - 171	2e-15	NB-ARC domain
AAA_22	PF13401	24 - 118	1.9e-07	AAA domain
WHD_ROQ1	PF23282	238 - 306	3.4e-17	Disease resistance protein Roq1-like, winged-helix domain
LRR_3	PF07725	403 - 422	1e-06	Leucine Rich Repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56510 AT1G56520 AT1G56520 AT1G56520 AT1G56520 AT1G56520 AT1G56540 AT1G56540 AT1G63730 AT1G63740 AT1G63740 AT1G63750 AT1G63750 AT1G63750 AT1G63860 AT1G63860 AT1G63860 AT1G63860 AT1G63860 AT1G63860 AT1G63870 AT1G63880 AT1G63880 AT1G64070 AT1G66090 AT2G16870 AT2G16870 AT2G16870 AT4G14370 AT4G14370 AT4G14370 AT5G38850 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G41540 AT5G41550 AT5G41740 AT5G41740 AT5G41740 AT5G41750 AT5G41750 AT5G49140 AT5G58120

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G56510 AT1G56520 AT1G56520 AT1G56520 AT1G56520 AT1G56520 AT1G56540 AT1G56540 AT1G63730 AT1G63740 AT1G63740 AT1G63750 AT1G63750 AT1G63750 AT1G63860 AT1G63860 AT1G63860 AT1G63860 AT1G63860 AT1G63860 AT1G63870 AT1G63880 AT1G63880 AT1G64070 AT1G66090 AT2G16870 AT2G16870 AT2G16870 AT4G14370 AT4G14370 AT4G14370 AT5G38850 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G40910 AT5G41540 AT5G41550 AT5G41740 AT5G41740 AT5G41740 AT5G41750 AT5G41750 AT5G49140 AT5G58120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3137
AasI	GACNNNNNNGTC	1 cut(s)	2169
AccB7I	CCANNNNNTGG	1 cut(s)	1076
AccI	GTMKAC	3 cut(s)	1403, 1432, 1450
AccII	CGCG	1 cut(s)	1518
AciI	CCGC	4 cut(s)	346, 1116, 1386, 2300
AclWI	GGATC	9 cut(s)	125, 141, 317, 422, 481, 947, 992, 2269, 2767
AcsI	RAATTY	8 cut(s)	783, 1063, 1185, 1634, 1642, 1843, 2141, 2665
AcuI	CTGAAG	4 cut(s)	2171, 2826, 3174, 3287
AfaI	GTAC	5 cut(s)	227, 336, 364, 1351, 1543
AfiI	CCNNNNNNNGG	6 cut(s)	336, 702, 1076, 1956, 2368, 3104
AflIII	ACRYGT	2 cut(s)	377, 2221
AgeI	ACCGGT	2 cut(s)	695, 1919
AhdI	GACNNNNNGTC	2 cut(s)	65, 1258
AjiI	CACGTC	2 cut(s)	2072, 2830
AjnI	CCWGG	4 cut(s)	392, 2527, 2589, 2596
AjuI	GAANNNNNNNTTGG	2 cut(s)	1829, 1861
Alw21I	GWGCWC	2 cut(s)	174, 3168
Alw26I	GTCTC	8 cut(s)	205, 345, 1580, 1766, 2117, 3088, 3106, 3274
AlwI	GGATC	9 cut(s)	125, 141, 317, 422, 481, 947, 992, 2269, 2767
AlwNI	CAGNNNCTG	2 cut(s)	1544, 1972
Ama87I	CYCGRG	3 cut(s)	1477, 1723, 3123
AoxI	GGCC	4 cut(s)	151, 1132, 1503, 3019
ApeKI	GCWGC	2 cut(s)	2196, 2415
ApoI	RAATTY	8 cut(s)	783, 1063, 1185, 1634, 1642, 1843, 2141, 2665
ArsI	GACNNNNNNTTYG	2 cut(s)	2327, 2359
AsiGI	ACCGGT	2 cut(s)	695, 1919
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	6 cut(s)	59, 164, 638, 723, 1132, 2429
AsuC2I	CCSGG	2 cut(s)	1478, 1479
AsuHPI	GGTGA	4 cut(s)	6, 1484, 2383, 2549
AsuII	TTCGAA	4 cut(s)	105, 749, 1577, 1886
AvaI	CYCGRG	3 cut(s)	1477, 1723, 3123
AvaII	GGWCC	5 cut(s)	59, 164, 638, 723, 2429
BanII	GRGCYC	2 cut(s)	174, 3168
BarI	GAAGNNNNNNTAC	2 cut(s)	822, 854
BbsI	GAAGAC	2 cut(s)	1727, 2288
Bbv12I	GWGCWC	2 cut(s)	174, 3168
BbvI	GCAGC	2 cut(s)	2208, 2402
BccI	CCATC	8 cut(s)	405, 547, 1021, 1070, 1407, 1954, 2591, 2960
BcgI	CGANNNNNNTGC	4 cut(s)	193, 227, 2692, 2726
BciT130I	CCWGG	4 cut(s)	394, 2529, 2591, 2598
BcnI	CCSGG	2 cut(s)	1478, 1479
BcoDI	GTCTC	8 cut(s)	205, 345, 1580, 1766, 2117, 3088, 3106, 3274
BfaI	CTAG	7 cut(s)	195, 669, 884, 893, 2097, 2246, 2306
BfmI	CTRYAG	5 cut(s)	501, 1964, 2544, 2565, 2727
BglII	AGATCT	3 cut(s)	1035, 2898, 3190
BisI	GCNGC	3 cut(s)	1386, 2197, 2416
BlsI	GCNGC	3 cut(s)	1387, 2198, 2417
BmcAI	AGTACT	2 cut(s)	364, 1351
Bme1390I	CCNGG	6 cut(s)	394, 1478, 1479, 2529, 2591, 2598
Bme18I	GGWCC	5 cut(s)	59, 164, 638, 723, 2429
BmeRI	GACNNNNNGTC	2 cut(s)	65, 1258
BmeT110I	CYCGRG	3 cut(s)	1477, 1723, 3123
BmgBI	CACGTC	2 cut(s)	2072, 2830
BmgT120I	GGNCC	6 cut(s)	59, 164, 638, 723, 1132, 2429
BmiI	GGNNCC	5 cut(s)	639, 724, 2595, 3150, 3217
BmrFI	CCNGG	6 cut(s)	394, 1478, 1479, 2529, 2591, 2598
BmsI	GCATC	6 cut(s)	1413, 1985, 2045, 2159, 2311, 3297
BpiI	GAAGAC	2 cut(s)	1727, 2288
BpmI	CTGGAG	5 cut(s)	468, 2580, 2848, 2961, 3046
Bpu10I	CCTNAGC	3 cut(s)	168, 1381, 3035
Bpu14I	TTCGAA	4 cut(s)	105, 749, 1577, 1886
BpuEI	CTTGAG	9 cut(s)	623, 1052, 1258, 1886, 2063, 2192, 2387, 2611, 2979
BpuMI	CCSGG	2 cut(s)	1478, 1479
BsaBI	GATNNNNATC	2 cut(s)	2582, 2764
BsaI	GGTCTC	2 cut(s)	3088, 3274
BsaJI	CCNNGG	5 cut(s)	55, 1477, 1478, 2425, 2589
BsaWI	WCCGGW	2 cut(s)	695, 1919
Bsc4I	CCNNNNNNNGG	6 cut(s)	336, 702, 1076, 1956, 2368, 3104
Bse118I	RCCGGY	2 cut(s)	695, 1919
Bse1I	ACTGG	9 cut(s)	588, 1977, 2171, 2343, 2472, 2865, 2944, 3029, 3098
Bse3DI	GCAATG	1 cut(s)	663
Bse8I	GATNNNNATC	2 cut(s)	2582, 2764
BseBI	CCWGG	4 cut(s)	394, 2529, 2591, 2598
BseDI	CCNNGG	5 cut(s)	55, 1477, 1478, 2425, 2589
BseGI	GGATG	9 cut(s)	558, 883, 1013, 1180, 1363, 1418, 1946, 2000, 2150
BseJI	GATNNNNATC	2 cut(s)	2582, 2764
BseLI	CCNNNNNNNGG	6 cut(s)	336, 702, 1076, 1956, 2368, 3104
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	4 cut(s)	97, 159, 2066, 3117
BseNI	ACTGG	9 cut(s)	588, 1977, 2171, 2343, 2472, 2865, 2944, 3029, 3098
BseRI	GAGGAG	1 cut(s)	2621
BseXI	GCAGC	2 cut(s)	2208, 2402
BseYI	CCCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	2314
Bsh1236I	CGCG	1 cut(s)	1518
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	153, 1134, 1505, 3021
BshTI	ACCGGT	2 cut(s)	695, 1919
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	2 cut(s)	174, 3168
BsiHKCI	CYCGRG	3 cut(s)	1477, 1723, 3123
BsiSI	CCGG	3 cut(s)	696, 1478, 1920
BslFI	GGGAC	3 cut(s)	573, 736, 2210
BslI	CCNNNNNNNGG	6 cut(s)	336, 702, 1076, 1956, 2368, 3104
BsmAI	GTCTC	8 cut(s)	205, 345, 1580, 1766, 2117, 3088, 3106, 3274
BsmBI	CGTCTC	2 cut(s)	1580, 2117
BsmFI	GGGAC	3 cut(s)	573, 736, 2210
BsmI	GAATGC	1 cut(s)	1626
BsnI	GGCC	4 cut(s)	153, 1134, 1505, 3021
Bso31I	GGTCTC	2 cut(s)	3088, 3274
BsoBI	CYCGRG	3 cut(s)	1477, 1723, 3123
Bsp119I	TTCGAA	4 cut(s)	105, 749, 1577, 1886
Bsp1286I	GDGCHC	2 cut(s)	174, 3168
Bsp19I	CCATGG	1 cut(s)	55
Bsp68I	TCGCGA	1 cut(s)	1518
BspACI	CCGC	4 cut(s)	346, 1116, 1386, 2300
BspANI	GGCC	4 cut(s)	153, 1134, 1505, 3021
BspCNI	CTCAG	4 cut(s)	96, 160, 2067, 3116
BspFNI	CGCG	1 cut(s)	1518
BspLI	GGNNCC	5 cut(s)	639, 724, 2595, 3150, 3217
BspMAI	CTGCAG	1 cut(s)	2548
BspPI	GGATC	9 cut(s)	125, 141, 317, 422, 481, 947, 992, 2269, 2767
BspT104I	TTCGAA	4 cut(s)	105, 749, 1577, 1886
BspTNI	GGTCTC	2 cut(s)	3088, 3274
BsrDI	GCAATG	1 cut(s)	663
BsrFI	RCCGGY	2 cut(s)	695, 1919
BsrI	ACTGG	9 cut(s)	588, 1977, 2171, 2343, 2472, 2865, 2944, 3029, 3098
BssAI	RCCGGY	2 cut(s)	695, 1919
BssECI	CCNNGG	5 cut(s)	55, 1477, 1478, 2425, 2589
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	4 cut(s)	394, 2529, 2591, 2598
Bst6I	CTCTTC	2 cut(s)	1080, 2319
BstBI	TTCGAA	4 cut(s)	105, 749, 1577, 1886
BstC8I	GCNNGC	7 cut(s)	1297, 1341, 1604, 1608, 2125, 2525, 2641
BstDSI	CCRYGG	2 cut(s)	55, 2425
BstEII	GGTNACC	2 cut(s)	1472, 2371
BstF5I	GGATG	9 cut(s)	558, 883, 1013, 1180, 1363, 1418, 1946, 2000, 2150
BstFNI	CGCG	1 cut(s)	1518
BstHHI	GCGC	1 cut(s)	824
BstMAI	GTCTC	8 cut(s)	205, 345, 1580, 1766, 2117, 3088, 3106, 3274
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	6 cut(s)	443, 476, 769, 2202, 2415, 3040
BstNI	CCWGG	4 cut(s)	394, 2529, 2591, 2598
BstNSI	RCATGY	3 cut(s)	381, 1299, 2225
BstPI	GGTNACC	2 cut(s)	1472, 2371
BstSCI	CCNGG	6 cut(s)	392, 1476, 1477, 2527, 2589, 2596
BstSFI	CTRYAG	5 cut(s)	501, 1964, 2544, 2565, 2727
BstUI	CGCG	1 cut(s)	1518
BstV1I	GCAGC	2 cut(s)	2208, 2402
BstV2I	GAAGAC	2 cut(s)	1727, 2288
BstX2I	RGATCY	4 cut(s)	1035, 2759, 2898, 3190
BstXI	CCANNNNNNTGG	2 cut(s)	2590, 2966
BstYI	RGATCY	4 cut(s)	1035, 2759, 2898, 3190
BsuRI	GGCC	4 cut(s)	153, 1134, 1505, 3021
BtgI	CCRYGG	2 cut(s)	55, 2425
BtgZI	GCGATG	1 cut(s)	1533
BtrI	CACGTC	2 cut(s)	2072, 2830
BtsCI	GGATG	9 cut(s)	558, 883, 1013, 1180, 1363, 1418, 1946, 2000, 2150
BtsIMutI	CAGTG	6 cut(s)	1426, 2164, 2266, 2389, 2872, 3022
BtuMI	TCGCGA	1 cut(s)	1518
Cac8I	GCNNGC	7 cut(s)	1297, 1341, 1604, 1608, 2125, 2525, 2641
CaiI	CAGNNNCTG	2 cut(s)	1544, 1972
CfoI	GCGC	1 cut(s)	824
Cfr10I	RCCGGY	2 cut(s)	695, 1919
Cfr13I	GGNCC	6 cut(s)	59, 164, 638, 723, 1132, 2429
Cfr9I	CCCGGG	1 cut(s)	1477
CseI	GACGC	4 cut(s)	1921, 1977, 2099, 2275
Csp6I	GTAC	5 cut(s)	226, 335, 363, 1350, 1542
CspAI	ACCGGT	2 cut(s)	695, 1919
CspCI	CAANNNNNGTGG	2 cut(s)	3011, 3046
CviQI	GTAC	5 cut(s)	226, 335, 363, 1350, 1542
DrdI	GACNNNNNNGTC	1 cut(s)	2169
DriI	GACNNNNNGTC	2 cut(s)	65, 1258
DseDI	GACNNNNNNGTC	1 cut(s)	2169
Eam1104I	CTCTTC	2 cut(s)	1080, 2319
Eam1105I	GACNNNNNGTC	2 cut(s)	65, 1258
EarI	CTCTTC	2 cut(s)	1080, 2319
Ecl136II	GAGCTC	2 cut(s)	172, 3166
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	174, 3168
Eco31I	GGTCTC	2 cut(s)	3088, 3274
Eco32I	GATATC	1 cut(s)	994
Eco47I	GGWCC	5 cut(s)	59, 164, 638, 723, 2429
Eco53kI	GAGCTC	2 cut(s)	172, 3166
Eco57I	CTGAAG	4 cut(s)	2171, 2826, 3174, 3287
Eco88I	CYCGRG	3 cut(s)	1477, 1723, 3123
Eco91I	GGTNACC	2 cut(s)	1472, 2371
EcoICRI	GAGCTC	2 cut(s)	172, 3166
EcoO109I	RGGNCCY	1 cut(s)	638
EcoO65I	GGTNACC	2 cut(s)	1472, 2371
EcoRI	GAATTC	1 cut(s)	1185
EcoRII	CCWGG	4 cut(s)	392, 2527, 2589, 2596
EcoRV	GATATC	1 cut(s)	994
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	2000
EcoT38I	GRGCYC	2 cut(s)	174, 3168
ErhI	CCWWGG	1 cut(s)	55
Esp3I	CGTCTC	2 cut(s)	1580, 2117
FalI	AAGNNNNNCTT	4 cut(s)	1014, 1046, 1595, 1627
FaqI	GGGAC	3 cut(s)	573, 736, 2210
FauI	CCCGC	1 cut(s)	339
FblI	GTMKAC	3 cut(s)	1403, 1432, 1450
Fnu4HI	GCNGC	3 cut(s)	1386, 2197, 2416
FokI	GGATG	9 cut(s)	565, 890, 1000, 1187, 1370, 1425, 1933, 2007, 2137
FriOI	GRGCYC	2 cut(s)	174, 3168
Fsp4HI	GCNGC	3 cut(s)	1386, 2197, 2416
FspBI	CTAG	7 cut(s)	195, 669, 884, 893, 2097, 2246, 2306
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	3 cut(s)	1386, 2197, 2416
GsaI	CCCAGC	1 cut(s)	469
GsuI	CTGGAG	5 cut(s)	468, 2580, 2848, 2961, 3046
HaeIII	GGCC	4 cut(s)	153, 1134, 1505, 3021
HapII	CCGG	3 cut(s)	696, 1478, 1920
HgaI	GACGC	4 cut(s)	1921, 1977, 2099, 2275
HhaI	GCGC	1 cut(s)	824
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HincII	GTYRAC	2 cut(s)	1911, 2053
HindII	GTYRAC	2 cut(s)	1911, 2053
HindIII	AAGCTT	5 cut(s)	282, 420, 770, 1121, 3041
HpaII	CCGG	3 cut(s)	696, 1478, 1920
HphI	GGTGA	4 cut(s)	6, 1484, 2383, 2549
Hpy166II	GTNNAC	8 cut(s)	1404, 1433, 1451, 1911, 2053, 2553, 3011, 3203
Hpy8I	GTNNAC	8 cut(s)	1404, 1433, 1451, 1911, 2053, 2553, 3011, 3203
Hpy99I	CGWCG	3 cut(s)	538, 1769, 2324
HpyAV	CCTTC	4 cut(s)	377, 967, 1145, 2373
HpyCH4IV	ACGT	6 cut(s)	1486, 1589, 1907, 2071, 2621, 2829
HpyF10VI	GCNNNNNNNGC	6 cut(s)	443, 476, 769, 2202, 2415, 3040
HpySE526I	ACGT	6 cut(s)	1486, 1589, 1907, 2071, 2621, 2829
HspAI	GCGC	1 cut(s)	822
LmnI	GCTCC	4 cut(s)	1264, 2599, 2867, 3148
Lsp1109I	GCAGC	2 cut(s)	2208, 2402
LweI	GCATC	6 cut(s)	1413, 1985, 2045, 2159, 2311, 3297
MaeI	CTAG	7 cut(s)	195, 669, 884, 893, 2097, 2246, 2306
MaeII	ACGT	6 cut(s)	1486, 1589, 1907, 2071, 2621, 2829
MaeIII	GTNAC	9 cut(s)	1327, 1472, 1701, 2099, 2236, 2371, 2507, 2830, 2989
MfeI	CAATTG	2 cut(s)	825, 1442
MflI	RGATCY	4 cut(s)	1035, 2759, 2898, 3190
MhlI	GDGCHC	2 cut(s)	174, 3168
MlyI	GAGTC	4 cut(s)	207, 581, 2741, 2827
MmeI	TCCRAC	4 cut(s)	917, 1242, 1773, 2140
Mph1103I	ATGCAT	1 cut(s)	2000
MslI	CAYNNNNRTG	3 cut(s)	1314, 2921, 2964
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	3 cut(s)	696, 1478, 1920
MspR9I	CCNGG	6 cut(s)	394, 1478, 1479, 2529, 2591, 2598
MunI	CAATTG	2 cut(s)	825, 1442
Mva1269I	GAATGC	1 cut(s)	1626
MvaI	CCWGG	4 cut(s)	394, 2529, 2591, 2598
MvnI	CGCG	1 cut(s)	1518
MwoI	GCNNNNNNNGC	6 cut(s)	443, 476, 769, 2202, 2415, 3040
NciI	CCSGG	2 cut(s)	1478, 1479
NcoI	CCATGG	1 cut(s)	55
NlaIV	GGNNCC	5 cut(s)	639, 724, 2595, 3150, 3217
NmuCI	GTSAC	4 cut(s)	1327, 1472, 2371, 2830
NruI	TCGCGA	1 cut(s)	1518
NsiI	ATGCAT	1 cut(s)	2000
NspI	RCATGY	3 cut(s)	381, 1299, 2225
NspV	TTCGAA	4 cut(s)	105, 749, 1577, 1886
PaeI	GCATGC	1 cut(s)	1299
PciI	ACATGT	2 cut(s)	377, 2221
PcsI	WCGNNNNNNNCGW	1 cut(s)	996
PctI	GAATGC	1 cut(s)	1626
PflMI	CCANNNNNTGG	1 cut(s)	1076
PinAI	ACCGGT	2 cut(s)	695, 1919
PkrI	GCNGC	3 cut(s)	1387, 2198, 2417
Ple19I	CGATCG	1 cut(s)	162
PleI	GAGTC	4 cut(s)	206, 581, 2740, 2827
PpsI	GAGTC	4 cut(s)	206, 581, 2740, 2827
PpuMI	RGGWCCY	1 cut(s)	638
PscI	ACATGT	2 cut(s)	377, 2221
PsiI	TTATAA	1 cut(s)	3137
Psp124BI	GAGCTC	2 cut(s)	174, 3168
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	4 cut(s)	392, 2527, 2589, 2596
PspEI	GGTNACC	2 cut(s)	1472, 2371
PspFI	CCCAGC	1 cut(s)	465
PspGI	CCWGG	4 cut(s)	392, 2527, 2589, 2596
PspN4I	GGNNCC	5 cut(s)	639, 724, 2595, 3150, 3217
PspPI	GGNCC	6 cut(s)	59, 164, 638, 723, 1132, 2429
PspPPI	RGGWCCY	1 cut(s)	638
PstI	CTGCAG	1 cut(s)	2548
PstNI	CAGNNNCTG	2 cut(s)	1544, 1972
PsuI	RGATCY	4 cut(s)	1035, 2759, 2898, 3190
PvuI	CGATCG	1 cut(s)	162
RruI	TCGCGA	1 cut(s)	1518
RsaI	GTAC	5 cut(s)	227, 336, 364, 1351, 1543
RsaNI	GTAC	5 cut(s)	226, 335, 363, 1350, 1542
RseI	CAYNNNNRTG	3 cut(s)	1314, 2921, 2964
SacI	GAGCTC	2 cut(s)	174, 3168
SatI	GCNGC	3 cut(s)	1386, 2197, 2416
Sau96I	GGNCC	6 cut(s)	59, 164, 638, 723, 1132, 2429
ScaI	AGTACT	2 cut(s)	364, 1351
SchI	GAGTC	4 cut(s)	207, 581, 2741, 2827
ScrFI	CCNGG	6 cut(s)	394, 1478, 1479, 2529, 2591, 2598
SduI	GDGCHC	2 cut(s)	174, 3168
SfaNI	GCATC	6 cut(s)	1413, 1985, 2045, 2159, 2311, 3297
SfcI	CTRYAG	5 cut(s)	501, 1964, 2544, 2565, 2727
SfuI	TTCGAA	4 cut(s)	105, 749, 1577, 1886
SinI	GGWCC	5 cut(s)	59, 164, 638, 723, 2429
SmaI	CCCGGG	1 cut(s)	1479
SmiMI	CAYNNNNRTG	3 cut(s)	1314, 2921, 2964
SmlI	CTYRAG	9 cut(s)	602, 1031, 1237, 1901, 2042, 2207, 2402, 2626, 2994
SmoI	CTYRAG	9 cut(s)	602, 1031, 1237, 1901, 2042, 2207, 2402, 2626, 2994
SphI	GCATGC	1 cut(s)	1299
SsiI	CCGC	4 cut(s)	346, 1116, 1386, 2300
SspMI	CTAG	7 cut(s)	195, 669, 884, 893, 2097, 2246, 2306
SstI	GAGCTC	2 cut(s)	174, 3168
StyD4I	CCNGG	6 cut(s)	392, 1476, 1477, 2527, 2589, 2596
StyI	CCWWGG	1 cut(s)	55
TaiI	ACGT	6 cut(s)	1489, 1592, 1910, 2074, 2624, 2832
TaqII	GACCGA	1 cut(s)	914
TatI	WGTACW	2 cut(s)	362, 1349
TauI	GCSGC	1 cut(s)	1388
TscAI	CASTG	6 cut(s)	1433, 2171, 2266, 2396, 2872, 3029
TseFI	GTSAC	4 cut(s)	1327, 1472, 2371, 2830
TseI	GCWGC	2 cut(s)	2196, 2415
Tsp45I	GTSAC	4 cut(s)	1327, 1472, 2371, 2830
TspDTI	ATGAA	7 cut(s)	489, 818, 1277, 1548, 1707, 3080, 3192
TspGWI	ACGGA	6 cut(s)	59, 114, 315, 352, 1540, 2442
TspMI	CCCGGG	1 cut(s)	1477
TspRI	CASTG	6 cut(s)	1433, 2171, 2266, 2396, 2872, 3029
Van91I	CCANNNNNTGG	1 cut(s)	1076
VpaK11BI	GGWCC	5 cut(s)	59, 164, 638, 723, 2429
XapI	RAATTY	8 cut(s)	783, 1063, 1185, 1634, 1642, 1843, 2141, 2665
XbaI	TCTAGA	3 cut(s)	194, 883, 2245
XceI	RCATGY	3 cut(s)	381, 1299, 2225
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1953, 2963
XmaI	CCCGGG	1 cut(s)	1477
XmiI	GTMKAC	3 cut(s)	1403, 1432, 1450
XspI	CTAG	7 cut(s)	195, 669, 884, 893, 2097, 2246, 2306
ZrmI	AGTACT	2 cut(s)	364, 1351
Zsp2I	ATGCAT	1 cut(s)	2000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.