AT1G66090

negative regulation of Rho guanyl-nucleotide exchange factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001561
Physical Location & Seq
Forward (+)
24602033 .. 24604763
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G66090.1

Sequence Viewer

Length: 1290 bp
ATGGCTGCATCTACTTCTTCTTCTTCTTCATCATCATCTTCTTCTTTATCTTCTCCTTCACCTTGCACATGGAGATACATGACTTTCACGAGCTTCCATGGACCAGATGTCCGCAACACATTTCTTAGTCATTTGAGGAAACAGTTTAACACCAATGGAATTACGATGTTTGATGATCAAAGGATGGAGAGAAGCCAAACCCTTGCCCCTACTCTCACGCAGGCGATTAGAGAATCGAAGATCTACATCGTCTTGCTCTCGAAGAACTATGCTTCATCGAGCTGGTGTCTTGATGAGCTATTGGAGATTTTAAACTGCAAAGAAAAAAGAGGACAGAGAGTGATGACAATCTTCTACGGCGTAAATCCATCTGATGTGCGGAAACAAACCGGAGAATTTGGAATCGCTTTCAACGAAACTTGTGCTCGTAAAACAGAGGAGGAGAGGAGAAAATGGAGCCACGCTTTGACCTGTGTGGGCAACATAACCGGAGTACACGTCCAAGACAGGGACGATGAGGCAAACATGATCGAGAAAATTGCAACTGATGTCTCAGAAAAACTGAATGCTACAGAGTCAAAGGATTTTGATGAAATGGTGGGAATTAAAGCTCATTTGACGAAAATTGAGTCTTTGCTATCTTTAGATTATGATAAAGTTAAGATCGTTGGGATCTCCGGTCCTGCAGGCATTGGTAAGAGTACCATTGCCAGAGCCTTACATAACCTACTCTCTAGCAGTTTTCATCTTAGTTGTTTTATGGAAAACCTTATTAGCCAAAGCAACCCCCATAGTTCTCTAGAGTATAGTTCGAAATTGAGTTTACAAGAGCAACTTCTCTCACAAGTTTTGAACGAAAAGGACATTAGGATACGCCATTTAGGTGCGATACAAGAAAGGCTACACGACCAGAGGGTTCTTATCATTCTTGATGACGTGACGAGTCTAGAGCAACTAGAGGTTTTGGCTAATATCAAGTGGTATGGTCCTGGAAGTAGGATCATAGTAATCACTAAAAAGAAAGATATTTTGGTGCAACATGGTATCTGTGATATATACCATGTGGGTTTTCCAACAGATGCAGATGCTCTAAAGATCTTTTGTCTATCTGCTTATAGACAAACCTCTCCACCTGATGGATCTATGAAAATTCATGAGTGTGAAATGTTTATAAAAATTTGTGGCAATCTTCCATTGCATCTACATGTTTTGGGGTCGGCGCTTCGGGGAAGGAGTTATGGCAGAGTGCAGAGTTTGTGTAATCTAGTGTCTCTGGCTGATTTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0002064 GO:0002065 GO:0002066 GO:0002093 GO:0002682 GO:0002683 GO:0002684 GO:0002685 GO:0002686 GO:0002687 GO:0002688 GO:0002690 GO:0002691 GO:0002693 GO:0002694 GO:0002695 GO:0003008 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0007088 GO:0007162 GO:0007275 GO:0007346 GO:0007399 GO:0007423 GO:0007517 GO:0007519 GO:0007600 GO:0007605 GO:0008104 GO:0008150 GO:0008285 GO:0008544 GO:0009605 GO:0009612 GO:0009628 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009913 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010564 GO:0010646 GO:0010648 GO:0010830 GO:0010831 GO:0014706 GO:0014902 GO:0014904 GO:0016020 GO:0016043 GO:0016324 GO:0022008 GO:0022407 GO:0022408 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030175 GO:0030182 GO:0030334 GO:0030335 GO:0030336 GO:0030855 GO:0031175 GO:0031252 GO:0031253 GO:0031256 GO:0031344 GO:0031346 GO:0032091 GO:0032101 GO:0032103 GO:0032420 GO:0032421 GO:0032501 GO:0032502 GO:0032589 GO:0032878 GO:0032879 GO:0032880 GO:0032886 GO:0032944 GO:0032945 GO:0032989 GO:0033036 GO:0033043 GO:0034097 GO:0035023 GO:0035024 GO:0035315 GO:0040012 GO:0040013 GO:0040017 GO:0042127 GO:0042129 GO:0042130 GO:0042221 GO:0042471 GO:0042472 GO:0042490 GO:0042491 GO:0042692 GO:0042802 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043393 GO:0043583 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044459 GO:0044463 GO:0044464 GO:0045177 GO:0045184 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045787 GO:0046578 GO:0046580 GO:0048468 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048583 GO:0048584 GO:0048585 GO:0048598 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048741 GO:0048747 GO:0048839 GO:0048856 GO:0048869 GO:0050670 GO:0050672 GO:0050789 GO:0050793 GO:0050794 GO:0050863 GO:0050865 GO:0050866 GO:0050868 GO:0050877 GO:0050896 GO:0050920 GO:0050921 GO:0050954 GO:0051056 GO:0051058 GO:0051094 GO:0051098 GO:0051099 GO:0051100 GO:0051128 GO:0051130 GO:0051146 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051249 GO:0051250 GO:0051259 GO:0051260 GO:0051270 GO:0051271 GO:0051272 GO:0051489 GO:0051491 GO:0051493 GO:0051716 GO:0051726 GO:0051783 GO:0055001 GO:0055002 GO:0060088 GO:0060113 GO:0060117 GO:0060119 GO:0060122 GO:0060142 GO:0060143 GO:0060171 GO:0060236 GO:0060341 GO:0060429 GO:0060491 GO:0060537 GO:0060538 GO:0060563 GO:0061061 GO:0065003 GO:0065007 GO:0065009 GO:0070507 GO:0070663 GO:0070664 GO:0070887 GO:0071156 GO:0071158 GO:0071214 GO:0071260 GO:0071310 GO:0071345 GO:0071496 GO:0071622 GO:0071624 GO:0071840 GO:0071889 GO:0071944 GO:0090022 GO:0090023 GO:0090068 GO:0090169 GO:0090224 GO:0090596 GO:0097458 GO:0098590 GO:0098858 GO:0098862 GO:0104004 GO:0120025 GO:0120032 GO:0120034 GO:0120035 GO:0120036 GO:0120038 GO:1901673 GO:1901739 GO:1901741 GO:1902115 GO:1902531 GO:1902532 GO:1902622 GO:1902624 GO:1903037 GO:1903038 GO:1903827 GO:1903828 GO:1903903 GO:1903904 GO:1904424 GO:1904475 GO:1904476 GO:1905097 GO:1905098 GO:1905871 GO:1905872 GO:1990868 GO:1990869 GO:2000114 GO:2000145 GO:2000146 GO:2000147 GO:2000389 GO:2000391 GO:2000401 GO:2000402 GO:2000404 GO:2000405 GO:2001106 GO:2001107
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC PL48 TIR

Protein Analysis

429

Amino Acids

48.02

Weight (kDa)

7.22

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 26 - 202 9.7e-58 TIR domain
TIR_2 PF13676 30 - 122 2.6e-11 TIR domain
NB-ARC PF00931 205 - 375 7.9e-14 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1172
AccB7I CCANNNNNTGG 1 cut(s) 1136
AciI CCGC 2 cut(s) 112, 379
AclWI GGATC 3 cut(s) 680, 1007, 1147
AcsI RAATTY 3 cut(s) 395, 1149, 1176
AfaI GTAC 2 cut(s) 495, 703
AfiI CCNNNNNNNGG 2 cut(s) 508, 1136
AflIII ACRYGT 2 cut(s) 496, 1204
AgsI TTSAA 2 cut(s) 412, 853
AhdI GACNNNNNGTC 1 cut(s) 107
AjiI CACGTC 2 cut(s) 499, 937
AjnI CCWGG 1 cut(s) 988
AjuI GAANNNNNNNTTGG 2 cut(s) 1013, 1045
AluBI AGCT 4 cut(s) 93, 282, 298, 611
AluI AGCT 4 cut(s) 93, 282, 298, 611
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 2 cut(s) 556, 1275
AlwI GGATC 3 cut(s) 680, 1007, 1147
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 3 cut(s) 395, 1149, 1176
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AspLEI GCGC 1 cut(s) 1222
AspS9I GGNCC 3 cut(s) 101, 680, 986
AsuHPI GGTGA 1 cut(s) 51
AsuII TTCGAA 1 cut(s) 812
AvaII GGWCC 3 cut(s) 101, 680, 986
BauI CACGAG 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 427
BccI CCATC 3 cut(s) 178, 376, 1130
BceAI ACGGC 1 cut(s) 373
BcgI CGANNNNNNTGC 4 cut(s) 404, 438, 521, 555
BciT130I CCWGG 1 cut(s) 990
BciVI GTATCC 1 cut(s) 864
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 2 cut(s) 556, 1275
BfaI CTAG 5 cut(s) 735, 800, 947, 956, 1265
BfmI CTRYAG 2 cut(s) 570, 684
BfoI RGCGCY 1 cut(s) 1223
BfuI GTATCC 1 cut(s) 864
BglII AGATCT 2 cut(s) 240, 1095
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 990
Bme18I GGWCC 3 cut(s) 101, 680, 986
BmeRI GACNNNNNGTC 1 cut(s) 107
BmgBI CACGTC 2 cut(s) 499, 937
BmgT120I GGNCC 3 cut(s) 101, 680, 986
BmiI GGNNCC 1 cut(s) 458
BmrFI CCNGG 1 cut(s) 990
BmsI GCATC 4 cut(s) 17, 1069, 1075, 1207
Bpu14I TTCGAA 1 cut(s) 812
BsaBI GATNNNNATC 2 cut(s) 245, 347
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 3 cut(s) 389, 488, 677
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 508, 1136
Bse3DI GCAATG 2 cut(s) 705, 1193
Bse8I GATNNNNATC 2 cut(s) 245, 347
BseBI CCWGG 1 cut(s) 990
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 189
BseJI GATNNNNATC 2 cut(s) 245, 347
BseLI CCNNNNNNNGG 2 cut(s) 508, 1136
BseMI GCAATG 2 cut(s) 705, 1193
BseMII CTCAG 1 cut(s) 567
BseRI GAGGAG 3 cut(s) 452, 455, 460
BsgI GTGCAG 1 cut(s) 1268
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 3 cut(s) 390, 489, 678
BslFI GGGAC 1 cut(s) 524
BslI CCNNNNNNNGG 2 cut(s) 508, 1136
BsmAI GTCTC 2 cut(s) 556, 1275
BsmFI GGGAC 1 cut(s) 524
BsmI GAATGC 1 cut(s) 571
Bsp119I TTCGAA 1 cut(s) 812
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 8 cut(s) 175, 240, 528, 663, 672, 999, 1095, 1139
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 2 cut(s) 112, 379
BspCNI CTCAG 1 cut(s) 566
BspHI TCATGA 1 cut(s) 1153
BspLI GGNNCC 1 cut(s) 458
BspMAI CTGCAG 1 cut(s) 688
BspPI GGATC 3 cut(s) 680, 1007, 1147
BspT104I TTCGAA 1 cut(s) 812
BsrDI GCAATG 2 cut(s) 705, 1193
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 8 cut(s) 175, 240, 528, 663, 672, 999, 1095, 1139
BssSI CACGAG 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 812
BstC8I GCNNGC 2 cut(s) 222, 688
BstDEI CTNAG 3 cut(s) 125, 553, 749
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 1223
BstHHI GCGC 1 cut(s) 1222
BstKTI GATC 8 cut(s) 178, 243, 531, 666, 675, 1002, 1098, 1142
BstMAI GTCTC 2 cut(s) 556, 1275
BstMBI GATC 8 cut(s) 175, 240, 528, 663, 672, 999, 1095, 1139
BstNI CCWGG 1 cut(s) 990
BstNSI RCATGY 1 cut(s) 1208
BstSCI CCNGG 1 cut(s) 988
BstSFI CTRYAG 2 cut(s) 570, 684
BstX2I RGATCY 4 cut(s) 240, 672, 1095, 1139
BstYI RGATCY 4 cut(s) 240, 672, 1095, 1139
BsuI GTATCC 1 cut(s) 864
BtgI CCRYGG 1 cut(s) 97
BtrI CACGTC 2 cut(s) 499, 937
BtsCI GGATG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 222, 688
CciI TCATGA 1 cut(s) 1153
CfoI GCGC 1 cut(s) 1222
Cfr13I GGNCC 3 cut(s) 101, 680, 986
Csp6I GTAC 2 cut(s) 494, 702
CviAII CATG 8 cut(s) 69, 79, 98, 526, 1040, 1061, 1154, 1205
CviQI GTAC 2 cut(s) 494, 702
DdeI CTNAG 3 cut(s) 125, 553, 749
DpnI GATC 8 cut(s) 177, 242, 530, 665, 674, 1001, 1097, 1141
DpnII GATC 8 cut(s) 175, 240, 528, 663, 672, 999, 1095, 1139
DraI TTTAAA 1 cut(s) 312
DriI GACNNNNNGTC 1 cut(s) 107
Eam1105I GACNNNNNGTC 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 97
Eco47I GGWCC 3 cut(s) 101, 680, 986
EcoRII CCWGG 1 cut(s) 988
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 8 cut(s) 72, 82, 101, 529, 1043, 1064, 1157, 1208
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FaqI GGGAC 1 cut(s) 524
FatI CATG 8 cut(s) 68, 78, 97, 525, 1039, 1060, 1153, 1204
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 5 cut(s) 735, 800, 947, 956, 1265
GlaI GCGC 1 cut(s) 1221
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 1223
HapII CCGG 3 cut(s) 390, 489, 678
HhaI GCGC 1 cut(s) 1222
Hin1II CATG 8 cut(s) 72, 82, 101, 529, 1043, 1064, 1157, 1208
Hin6I GCGC 1 cut(s) 1220
HinP1I GCGC 1 cut(s) 1220
HinfI GANTC 5 cut(s) 233, 402, 575, 629, 943
HpaII CCGG 3 cut(s) 390, 489, 678
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 2 cut(s) 496, 824
Hpy188I TCNGA 2 cut(s) 373, 556
Hpy188III TCNNGA 8 cut(s) 88, 259, 290, 532, 800, 929, 947, 1154
Hpy8I GTNNAC 2 cut(s) 496, 824
HpyAV CCTTC 2 cut(s) 66, 1224
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 2 cut(s) 498, 936
HpyCH4V TGCA 9 cut(s) 8, 66, 318, 542, 686, 1036, 1082, 1198, 1249
HpyF3I CTNAG 3 cut(s) 125, 553, 749
HpySE526I ACGT 2 cut(s) 498, 936
Hsp92II CATG 8 cut(s) 72, 82, 101, 529, 1043, 1064, 1157, 1208
HspAI GCGC 1 cut(s) 1220
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 8 cut(s) 175, 240, 528, 663, 672, 999, 1095, 1139
LmnI GCTCC 1 cut(s) 456
LweI GCATC 4 cut(s) 17, 1069, 1075, 1207
MaeI CTAG 5 cut(s) 735, 800, 947, 956, 1265
MaeII ACGT 2 cut(s) 498, 936
MaeIII GTNAC 1 cut(s) 937
MalI GATC 8 cut(s) 177, 242, 530, 665, 674, 1001, 1097, 1141
MboI GATC 8 cut(s) 175, 240, 528, 663, 672, 999, 1095, 1139
MflI RGATCY 4 cut(s) 240, 672, 1095, 1139
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 8 cut(s) 159, 395, 537, 603, 624, 815, 1149, 1176
MlyI GAGTC 3 cut(s) 584, 638, 952
MmeI TCCRAC 1 cut(s) 1097
MnlI CCTC 9 cut(s) 129, 323, 430, 433, 438, 511, 906, 952, 1135
MseI TTAA 4 cut(s) 147, 311, 606, 660
MslI CAYNNNNRTG 3 cut(s) 882, 1158, 1203
MspI CCGG 3 cut(s) 390, 489, 678
MspR9I CCNGG 1 cut(s) 990
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 990
NcoI CCATGG 1 cut(s) 97
NdeII GATC 8 cut(s) 175, 240, 528, 663, 672, 999, 1095, 1139
NlaIII CATG 8 cut(s) 72, 82, 101, 529, 1043, 1064, 1157, 1208
NlaIV GGNNCC 1 cut(s) 458
NmuCI GTSAC 1 cut(s) 937
NspI RCATGY 1 cut(s) 1208
NspV TTCGAA 1 cut(s) 812
PagI TCATGA 1 cut(s) 1153
PciI ACATGT 1 cut(s) 1204
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 233, 402
PflMI CCANNNNNTGG 1 cut(s) 1136
PfoI TCCNGGA 1 cut(s) 988
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 3 cut(s) 583, 637, 951
PpsI GAGTC 3 cut(s) 583, 637, 951
PscI ACATGT 1 cut(s) 1204
PsiI TTATAA 1 cut(s) 1172
Psp6I CCWGG 1 cut(s) 988
PspGI CCWGG 1 cut(s) 988
PspN4I GGNNCC 1 cut(s) 458
PspPI GGNCC 3 cut(s) 101, 680, 986
PstI CTGCAG 1 cut(s) 688
PsuI RGATCY 4 cut(s) 240, 672, 1095, 1139
RsaI GTAC 2 cut(s) 495, 703
RsaNI GTAC 2 cut(s) 494, 702
RseI CAYNNNNRTG 3 cut(s) 882, 1158, 1203
SaqAI TTAA 4 cut(s) 147, 311, 606, 660
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 8 cut(s) 175, 240, 528, 663, 672, 999, 1095, 1139
Sau96I GGNCC 3 cut(s) 101, 680, 986
SbfI CCTGCAGG 1 cut(s) 688
SchI GAGTC 3 cut(s) 584, 638, 952
ScrFI CCNGG 1 cut(s) 990
SdaI CCTGCAGG 1 cut(s) 688
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 4 cut(s) 17, 1069, 1075, 1207
SfcI CTRYAG 2 cut(s) 570, 684
SfuI TTCGAA 1 cut(s) 812
SinI GGWCC 3 cut(s) 101, 680, 986
SmiMI CAYNNNNRTG 3 cut(s) 882, 1158, 1203
Sse8387I CCTGCAGG 1 cut(s) 688
Sse9I AATT 8 cut(s) 159, 395, 537, 603, 624, 815, 1149, 1176
SsiI CCGC 2 cut(s) 112, 379
SspMI CTAG 5 cut(s) 735, 800, 947, 956, 1265
StyD4I CCNGG 1 cut(s) 988
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 2 cut(s) 501, 939
TaqI TCGA 5 cut(s) 236, 260, 278, 531, 812
TasI AATT 8 cut(s) 159, 395, 537, 603, 624, 815, 1149, 1176
TatI WGTACW 1 cut(s) 493
TfiI GAWTC 2 cut(s) 233, 402
Tru1I TTAA 4 cut(s) 147, 311, 606, 660
Tru9I TTAA 4 cut(s) 147, 311, 606, 660
TseFI GTSAC 1 cut(s) 937
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 937
TspDTI ATGAA 6 cut(s) 18, 264, 606, 734, 1142, 1160
Van91I CCANNNNNTGG 1 cut(s) 1136
VpaK11BI GGWCC 3 cut(s) 101, 680, 986
XapI RAATTY 3 cut(s) 395, 1149, 1176
XbaI TCTAGA 2 cut(s) 799, 946
XceI RCATGY 1 cut(s) 1208
XspI CTAG 5 cut(s) 735, 800, 947, 956, 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.