Disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 10 - 186 | 5.4e-61 | TIR domain |
| TIR_2 | PF13676 | 13 - 109 | 4.4e-11 | TIR domain |
| NB-ARC | PF00931 | 191 - 363 | 1.3e-14 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 430 - 501 | 1.4e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 605 - 623 | 1.6e-07 | Leucine Rich Repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 738 |
| AatII | GACGTC | 1 cut(s) | 1386 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1100 |
| AccBSI | CCGCTC | 1 cut(s) | 345 |
| AccII | CGCG | 2 cut(s) | 1909, 3093 |
| AccIII | TCCGGA | 1 cut(s) | 947 |
| AciI | CCGC | 6 cut(s) | 345, 431, 2279, 2594, 2651, 3091 |
| AclI | AACGTT | 1 cut(s) | 1358 |
| AclWI | GGATC | 3 cut(s) | 164, 1054, 1588 |
| AcoI | YGGCCR | 1 cut(s) | 1186 |
| AcsI | RAATTY | 9 cut(s) | 74, 627, 694, 775, 1677, 1923, 2771, 2808, 2897 |
| AcyI | GRCGYC | 1 cut(s) | 1383 |
| AfaI | GTAC | 7 cut(s) | 333, 1425, 1576, 1821, 2463, 2878, 2940 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 24, 1100, 2651 |
| AflII | CTTAAG | 1 cut(s) | 1672 |
| AflIII | ACRYGT | 2 cut(s) | 1605, 2732 |
| AgeI | ACCGGT | 1 cut(s) | 1571 |
| AhlI | ACTAGT | 1 cut(s) | 1232 |
| AjnI | CCWGG | 4 cut(s) | 1377, 1433, 2401, 2575 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 983, 1015 |
| Alw21I | GWGCWC | 2 cut(s) | 1979, 2120 |
| Alw26I | GTCTC | 7 cut(s) | 602, 1817, 1949, 2226, 2315, 2351, 3103 |
| AlwI | GGATC | 3 cut(s) | 164, 1054, 1588 |
| Ama87I | CYCGRG | 2 cut(s) | 43, 1511 |
| Aor13HI | TCCGGA | 1 cut(s) | 947 |
| AoxI | GGCC | 3 cut(s) | 148, 1186, 1536 |
| ApoI | RAATTY | 9 cut(s) | 74, 627, 694, 775, 1677, 1923, 2771, 2808, 2897 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 403, 435, 507, 539, 2742, 2774 |
| AsiGI | ACCGGT | 1 cut(s) | 1571 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1545, 2193 |
| AspS9I | GGNCC | 3 cut(s) | 161, 411, 635 |
| AsuC2I | CCSGG | 1 cut(s) | 2783 |
| AsuHPI | GGTGA | 4 cut(s) | 359, 409, 2771, 2852 |
| AsuII | TTCGAA | 2 cut(s) | 2009, 2812 |
| AvaI | CYCGRG | 2 cut(s) | 43, 1511 |
| AvaII | GGWCC | 3 cut(s) | 161, 411, 635 |
| BalI | TGGCCA | 1 cut(s) | 1188 |
| BanII | GRGCYC | 1 cut(s) | 1512 |
| BauI | CACGAG | 1 cut(s) | 1814 |
| BbsI | GAAGAC | 8 cut(s) | 31, 830, 998, 1406, 1731, 1778, 2399, 2715 |
| Bbv12I | GWGCWC | 2 cut(s) | 1979, 2120 |
| BccI | CCATC | 9 cut(s) | 402, 538, 544, 1094, 1197, 2209, 2378, 2639, 3099 |
| BceAI | ACGGC | 1 cut(s) | 70 |
| BciT130I | CCWGG | 4 cut(s) | 1379, 1435, 2403, 2577 |
| BclI | TGATCA | 1 cut(s) | 2230 |
| BcnI | CCSGG | 1 cut(s) | 2783 |
| BcoDI | GTCTC | 7 cut(s) | 602, 1817, 1949, 2226, 2315, 2351, 3103 |
| BcuI | ACTAGT | 1 cut(s) | 1232 |
| BfmI | CTRYAG | 4 cut(s) | 639, 2380, 2613, 2905 |
| BfrI | CTTAAG | 1 cut(s) | 1672 |
| BglII | AGATCT | 1 cut(s) | 2943 |
| BlpI | GCTNAGC | 1 cut(s) | 2297 |
| Bme1390I | CCNGG | 5 cut(s) | 1379, 1435, 2403, 2577, 2783 |
| Bme18I | GGWCC | 3 cut(s) | 161, 411, 635 |
| BmeT110I | CYCGRG | 2 cut(s) | 43, 1511 |
| BmgT120I | GGNCC | 3 cut(s) | 161, 411, 635 |
| BmiI | GGNNCC | 3 cut(s) | 636, 946, 2643 |
| BmrFI | CCNGG | 5 cut(s) | 1379, 1435, 2403, 2577, 2783 |
| BmrI | ACTGGG | 1 cut(s) | 2474 |
| BmsI | GCATC | 4 cut(s) | 288, 1465, 2989, 3064 |
| BmuI | ACTGGG | 1 cut(s) | 2474 |
| BpiI | GAAGAC | 8 cut(s) | 31, 830, 998, 1406, 1731, 1778, 2399, 2715 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1982, 2014 |
| BpmI | CTGGAG | 1 cut(s) | 2628 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1748, 2303 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2297 |
| Bpu14I | TTCGAA | 2 cut(s) | 2009, 2812 |
| BpuEI | CTTGAG | 9 cut(s) | 592, 1076, 1868, 1963, 1973, 2114, 2243, 2474, 2656 |
| BpuMI | CCSGG | 1 cut(s) | 2783 |
| BsaHI | GRCGYC | 1 cut(s) | 1383 |
| BsaI | GGTCTC | 1 cut(s) | 2226 |
| BsaJI | CCNNGG | 5 cut(s) | 52, 1094, 1434, 1742, 1790 |
| BsaWI | WCCGGW | 3 cut(s) | 947, 1443, 1571 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 24, 1100, 2651 |
| Bse118I | RCCGGY | 1 cut(s) | 1571 |
| Bse1I | ACTGG | 8 cut(s) | 174, 467, 857, 1582, 1867, 2480, 2520, 2645 |
| Bse3DI | GCAATG | 3 cut(s) | 660, 1314, 1659 |
| BseAI | TCCGGA | 1 cut(s) | 947 |
| BseBI | CCWGG | 4 cut(s) | 1379, 1435, 2403, 2577 |
| BseDI | CCNNGG | 5 cut(s) | 52, 1094, 1434, 1742, 1790 |
| BseGI | GGATG | 5 cut(s) | 901, 1105, 1456, 2524, 2631 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 24, 1100, 2651 |
| BseMI | GCAATG | 3 cut(s) | 660, 1314, 1659 |
| BseMII | CTCAG | 6 cut(s) | 72, 94, 417, 468, 2952, 3069 |
| BseNI | ACTGG | 8 cut(s) | 174, 467, 857, 1582, 1867, 2480, 2520, 2645 |
| BseRI | GAGGAG | 1 cut(s) | 459 |
| Bsh1236I | CGCG | 2 cut(s) | 1909, 3093 |
| BshFI | GGCC | 3 cut(s) | 150, 1188, 1538 |
| BshTI | ACCGGT | 1 cut(s) | 1571 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1979, 2120 |
| BsiHKCI | CYCGRG | 2 cut(s) | 43, 1511 |
| BsiSI | CCGG | 4 cut(s) | 948, 1444, 1572, 2782 |
| BslFI | GGGAC | 5 cut(s) | 570, 1855, 2261, 2573, 2668 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 24, 1100, 2651 |
| BsmAI | GTCTC | 7 cut(s) | 602, 1817, 1949, 2226, 2315, 2351, 3103 |
| BsmBI | CGTCTC | 3 cut(s) | 1817, 2315, 2351 |
| BsmFI | GGGAC | 5 cut(s) | 570, 1855, 2261, 2573, 2668 |
| BsmI | GAATGC | 2 cut(s) | 2252, 3101 |
| BsnI | GGCC | 3 cut(s) | 150, 1188, 1538 |
| Bso31I | GGTCTC | 1 cut(s) | 2226 |
| BsoBI | CYCGRG | 2 cut(s) | 43, 1511 |
| Bsp119I | TTCGAA | 2 cut(s) | 2009, 2812 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1512, 1979, 2120 |
| Bsp13I | TCCGGA | 1 cut(s) | 947 |
| Bsp1407I | TGTACA | 2 cut(s) | 1423, 2938 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2297 |
| BspACI | CCGC | 6 cut(s) | 345, 431, 2279, 2594, 2651, 3091 |
| BspANI | GGCC | 3 cut(s) | 150, 1188, 1538 |
| BspCNI | CTCAG | 6 cut(s) | 71, 93, 418, 469, 2953, 3070 |
| BspEI | TCCGGA | 1 cut(s) | 947 |
| BspFNI | CGCG | 2 cut(s) | 1909, 3093 |
| BspLI | GGNNCC | 3 cut(s) | 636, 946, 2643 |
| BspMAI | CTGCAG | 3 cut(s) | 643, 2384, 2909 |
| BspPI | GGATC | 3 cut(s) | 164, 1054, 1588 |
| BspQI | GCTCTTC | 2 cut(s) | 1104, 2527 |
| BspT104I | TTCGAA | 2 cut(s) | 2009, 2812 |
| BspTI | CTTAAG | 1 cut(s) | 1672 |
| BspTNI | GGTCTC | 1 cut(s) | 2226 |
| BsrBI | CCGCTC | 1 cut(s) | 345 |
| BsrDI | GCAATG | 3 cut(s) | 660, 1314, 1659 |
| BsrFI | RCCGGY | 1 cut(s) | 1571 |
| BsrGI | TGTACA | 2 cut(s) | 1423, 2938 |
| BsrI | ACTGG | 8 cut(s) | 174, 467, 857, 1582, 1867, 2480, 2520, 2645 |
| BssAI | RCCGGY | 1 cut(s) | 1571 |
| BssECI | CCNNGG | 5 cut(s) | 52, 1094, 1434, 1742, 1790 |
| BssNI | GRCGYC | 1 cut(s) | 1383 |
| BssSI | CACGAG | 1 cut(s) | 1814 |
| Bst2BI | CACGAG | 1 cut(s) | 1814 |
| Bst2UI | CCWGG | 4 cut(s) | 1379, 1435, 2403, 2577 |
| Bst4CI | ACNGT | 2 cut(s) | 1500, 2124 |
| Bst6I | CTCTTC | 8 cut(s) | 540, 1104, 1536, 2005, 2527, 2979, 3015, 3054 |
| BstACI | GRCGYC | 1 cut(s) | 1383 |
| BstAFI | CTTAAG | 1 cut(s) | 1672 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1462 |
| BstAUI | TGTACA | 2 cut(s) | 1423, 2938 |
| BstBI | TTCGAA | 2 cut(s) | 2009, 2812 |
| BstC8I | GCNNGC | 6 cut(s) | 177, 1116, 1196, 1321, 1641, 2686 |
| BstDSI | CCRYGG | 2 cut(s) | 52, 1094 |
| BstEII | GGTNACC | 1 cut(s) | 2571 |
| BstF5I | GGATG | 5 cut(s) | 901, 1105, 1456, 2524, 2631 |
| BstFNI | CGCG | 2 cut(s) | 1909, 3093 |
| BstMAI | GTCTC | 7 cut(s) | 602, 1817, 1949, 2226, 2315, 2351, 3103 |
| BstNI | CCWGG | 4 cut(s) | 1379, 1435, 2403, 2577 |
| BstNSI | RCATGY | 3 cut(s) | 1323, 1609, 2736 |
| BstPI | GGTNACC | 1 cut(s) | 2571 |
| BstSCI | CCNGG | 5 cut(s) | 1377, 1433, 2401, 2575, 2781 |
| BstSFI | CTRYAG | 4 cut(s) | 639, 2380, 2613, 2905 |
| BstUI | CGCG | 2 cut(s) | 1909, 3093 |
| BstV2I | GAAGAC | 8 cut(s) | 31, 830, 998, 1406, 1731, 1778, 2399, 2715 |
| BstX2I | RGATCY | 3 cut(s) | 1059, 1580, 2943 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2638 |
| BstYI | RGATCY | 3 cut(s) | 1059, 1580, 2943 |
| BsuRI | GGCC | 3 cut(s) | 150, 1188, 1538 |
| BtgI | CCRYGG | 2 cut(s) | 52, 1094 |
| BtsCI | GGATG | 5 cut(s) | 901, 1105, 1456, 2524, 2631 |
| BtsIMutI | CAGTG | 1 cut(s) | 1624 |
| Cac8I | GCNNGC | 6 cut(s) | 177, 1116, 1196, 1321, 1641, 2686 |
| Cfr10I | RCCGGY | 1 cut(s) | 1571 |
| Cfr13I | GGNCC | 3 cut(s) | 161, 411, 635 |
| CseI | GACGC | 2 cut(s) | 572, 2326 |
| Csp6I | GTAC | 7 cut(s) | 332, 1424, 1575, 1820, 2462, 2877, 2939 |
| CspAI | ACCGGT | 1 cut(s) | 1571 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1968, 2003 |
| CviAII | CATG | 7 cut(s) | 35, 1025, 1320, 1606, 1729, 2107, 2733 |
| CviQI | GTAC | 7 cut(s) | 332, 1424, 1575, 1820, 2462, 2877, 2939 |
| DraI | TTTAAA | 4 cut(s) | 127, 706, 2511, 2896 |
| EaeI | YGGCCR | 1 cut(s) | 1186 |
| Eam1104I | CTCTTC | 8 cut(s) | 540, 1104, 1536, 2005, 2527, 2979, 3015, 3054 |
| EarI | CTCTTC | 8 cut(s) | 540, 1104, 1536, 2005, 2527, 2979, 3015, 3054 |
| Eco24I | GRGCYC | 1 cut(s) | 1512 |
| Eco31I | GGTCTC | 1 cut(s) | 2226 |
| Eco47I | GGWCC | 3 cut(s) | 161, 411, 635 |
| Eco88I | CYCGRG | 2 cut(s) | 43, 1511 |
| Eco91I | GGTNACC | 1 cut(s) | 2571 |
| EcoO109I | RGGNCCY | 1 cut(s) | 635 |
| EcoO65I | GGTNACC | 1 cut(s) | 2571 |
| EcoRII | CCWGG | 4 cut(s) | 1377, 1433, 2401, 2575 |
| EcoT22I | ATGCAT | 1 cut(s) | 1458 |
| EcoT38I | GRGCYC | 1 cut(s) | 1512 |
| Esp3I | CGTCTC | 3 cut(s) | 1817, 2315, 2351 |
| FaeI | CATG | 7 cut(s) | 38, 1028, 1323, 1609, 1732, 2110, 2736 |
| FaqI | GGGAC | 5 cut(s) | 570, 1855, 2261, 2573, 2668 |
| FatI | CATG | 7 cut(s) | 34, 1024, 1319, 1605, 1728, 2106, 2732 |
| FauI | CCCGC | 2 cut(s) | 2286, 2644 |
| FauNDI | CATATG | 3 cut(s) | 1273, 1827, 2272 |
| FbaI | TGATCA | 1 cut(s) | 2230 |
| FokI | GGATG | 5 cut(s) | 908, 1112, 1443, 2531, 2618 |
| FriOI | GRGCYC | 1 cut(s) | 1512 |
| GsuI | CTGGAG | 1 cut(s) | 2628 |
| HaeIII | GGCC | 3 cut(s) | 150, 1188, 1538 |
| HapII | CCGG | 4 cut(s) | 948, 1444, 1572, 2782 |
| HgaI | GACGC | 2 cut(s) | 572, 2326 |
| Hin1I | GRCGYC | 1 cut(s) | 1383 |
| Hin1II | CATG | 7 cut(s) | 38, 1028, 1323, 1609, 1732, 2110, 2736 |
| HincII | GTYRAC | 2 cut(s) | 1006, 1441 |
| HindII | GTYRAC | 2 cut(s) | 1006, 1441 |
| HindIII | AAGCTT | 1 cut(s) | 2305 |
| HpaII | CCGG | 4 cut(s) | 948, 1444, 1572, 2782 |
| HphI | GGTGA | 4 cut(s) | 359, 409, 2771, 2852 |
| Hpy166II | GTNNAC | 4 cut(s) | 1006, 1441, 2601, 2939 |
| Hpy8I | GTNNAC | 4 cut(s) | 1006, 1441, 2601, 2939 |
| HpyAV | CCTTC | 5 cut(s) | 237, 942, 2424, 2552, 2699 |
| HpyCH4III | ACNGT | 2 cut(s) | 1500, 2124 |
| HpyCH4IV | ACGT | 9 cut(s) | 21, 63, 91, 1257, 1358, 1383, 1519, 1810, 2344 |
| HpySE526I | ACGT | 9 cut(s) | 21, 63, 91, 1257, 1358, 1383, 1519, 1810, 2344 |
| Hsp92I | GRCGYC | 1 cut(s) | 1383 |
| Hsp92II | CATG | 7 cut(s) | 38, 1028, 1323, 1609, 1732, 2110, 2736 |
| Kpn2I | TCCGGA | 1 cut(s) | 947 |
| Ksp22I | TGATCA | 1 cut(s) | 2230 |
| LguI | GCTCTTC | 2 cut(s) | 1104, 2527 |
| LmnI | GCTCC | 3 cut(s) | 286, 1990, 2647 |
| LweI | GCATC | 4 cut(s) | 288, 1465, 2989, 3064 |
| MaeII | ACGT | 9 cut(s) | 21, 63, 91, 1257, 1358, 1383, 1519, 1810, 2344 |
| MaeIII | GTNAC | 9 cut(s) | 964, 1359, 1373, 1705, 1752, 2355, 2487, 2571, 2840 |
| MbiI | CCGCTC | 1 cut(s) | 345 |
| MfeI | CAATTG | 1 cut(s) | 2503 |
| MflI | RGATCY | 3 cut(s) | 1059, 1580, 2943 |
| MhlI | GDGCHC | 3 cut(s) | 1512, 1979, 2120 |
| MlsI | TGGCCA | 1 cut(s) | 1188 |
| MluNI | TGGCCA | 1 cut(s) | 1188 |
| MlyI | GAGTC | 3 cut(s) | 578, 2104, 2807 |
| MmeI | TCCRAC | 2 cut(s) | 1061, 2093 |
| Mox20I | TGGCCA | 1 cut(s) | 1188 |
| Mph1103I | ATGCAT | 1 cut(s) | 1458 |
| MroI | TCCGGA | 1 cut(s) | 947 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1545, 2193 |
| MscI | TGGCCA | 1 cut(s) | 1188 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2291 |
| Msp20I | TGGCCA | 1 cut(s) | 1188 |
| MspA1I | CMGCKG | 1 cut(s) | 2904 |
| MspCI | CTTAAG | 1 cut(s) | 1672 |
| MspI | CCGG | 4 cut(s) | 948, 1444, 1572, 2782 |
| MspR9I | CCNGG | 5 cut(s) | 1379, 1435, 2403, 2577, 2783 |
| MunI | CAATTG | 1 cut(s) | 2503 |
| Mva1269I | GAATGC | 2 cut(s) | 2252, 3101 |
| MvaI | CCWGG | 4 cut(s) | 1379, 1435, 2403, 2577 |
| MvnI | CGCG | 2 cut(s) | 1909, 3093 |
| NciI | CCSGG | 1 cut(s) | 2783 |
| NdeI | CATATG | 3 cut(s) | 1273, 1827, 2272 |
| NlaIII | CATG | 7 cut(s) | 38, 1028, 1323, 1609, 1732, 2110, 2736 |
| NlaIV | GGNNCC | 3 cut(s) | 636, 946, 2643 |
| NmeAIII | GCCGAG | 1 cut(s) | 1723 |
| NmuCI | GTSAC | 1 cut(s) | 2840 |
| NsiI | ATGCAT | 1 cut(s) | 1458 |
| NspI | RCATGY | 3 cut(s) | 1323, 1609, 2736 |
| NspV | TTCGAA | 2 cut(s) | 2009, 2812 |
| PaeI | GCATGC | 1 cut(s) | 1323 |
| PciI | ACATGT | 2 cut(s) | 1605, 2732 |
| PciSI | GCTCTTC | 2 cut(s) | 1104, 2527 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 60 |
| PctI | GAATGC | 2 cut(s) | 2252, 3101 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1545, 2193 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1100 |
| PinAI | ACCGGT | 1 cut(s) | 1571 |
| PleI | GAGTC | 3 cut(s) | 578, 2104, 2806 |
| PpsI | GAGTC | 3 cut(s) | 578, 2104, 2806 |
| PpuMI | RGGWCCY | 1 cut(s) | 635 |
| PscI | ACATGT | 2 cut(s) | 1605, 2732 |
| PsiI | TTATAA | 1 cut(s) | 738 |
| Psp1406I | AACGTT | 1 cut(s) | 1358 |
| Psp5II | RGGWCCY | 1 cut(s) | 635 |
| Psp6I | CCWGG | 4 cut(s) | 1377, 1433, 2401, 2575 |
| PspEI | GGTNACC | 1 cut(s) | 2571 |
| PspGI | CCWGG | 4 cut(s) | 1377, 1433, 2401, 2575 |
| PspN4I | GGNNCC | 3 cut(s) | 636, 946, 2643 |
| PspPI | GGNCC | 3 cut(s) | 161, 411, 635 |
| PspPPI | RGGWCCY | 1 cut(s) | 635 |
| PstI | CTGCAG | 3 cut(s) | 643, 2384, 2909 |
| PsuI | RGATCY | 3 cut(s) | 1059, 1580, 2943 |
| PvuII | CAGCTG | 1 cut(s) | 2904 |
| RsaI | GTAC | 7 cut(s) | 333, 1425, 1576, 1821, 2463, 2878, 2940 |
| RsaNI | GTAC | 7 cut(s) | 332, 1424, 1575, 1820, 2462, 2877, 2939 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2291 |
| SapI | GCTCTTC | 2 cut(s) | 1104, 2527 |
| Sau96I | GGNCC | 3 cut(s) | 161, 411, 635 |
| SbfI | CCTGCAGG | 1 cut(s) | 643 |
| SchI | GAGTC | 3 cut(s) | 578, 2104, 2807 |
| ScrFI | CCNGG | 5 cut(s) | 1379, 1435, 2403, 2577, 2783 |
| SdaI | CCTGCAGG | 1 cut(s) | 643 |
| SduI | GDGCHC | 3 cut(s) | 1512, 1979, 2120 |
| SfaNI | GCATC | 4 cut(s) | 288, 1465, 2989, 3064 |
| SfcI | CTRYAG | 4 cut(s) | 639, 2380, 2613, 2905 |
| SfuI | TTCGAA | 2 cut(s) | 2009, 2812 |
| SinI | GGWCC | 3 cut(s) | 161, 411, 635 |
| SmiI | ATTTAAAT | 1 cut(s) | 706 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2291 |
| SpeI | ACTAGT | 1 cut(s) | 1232 |
| SphI | GCATGC | 1 cut(s) | 1323 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 643 |
| SsiI | CCGC | 6 cut(s) | 345, 431, 2279, 2594, 2651, 3091 |
| SspI | AATATT | 2 cut(s) | 2216, 3029 |
| StyD4I | CCNGG | 5 cut(s) | 1377, 1433, 2401, 2575, 2781 |
| SwaI | ATTTAAAT | 1 cut(s) | 706 |
| TaaI | ACNGT | 2 cut(s) | 1500, 2124 |
| TaiI | ACGT | 9 cut(s) | 24, 66, 94, 1260, 1361, 1386, 1522, 1813, 2347 |
| TaqI | TCGA | 9 cut(s) | 14, 318, 955, 1666, 2009, 2147, 2446, 2706, 2812 |
| TatI | WGTACW | 4 cut(s) | 1423, 2461, 2876, 2938 |
| TauI | GCSGC | 2 cut(s) | 434, 3093 |
| TscAI | CASTG | 1 cut(s) | 1624 |
| TseFI | GTSAC | 1 cut(s) | 2840 |
| Tsp45I | GTSAC | 1 cut(s) | 2840 |
| TspDTI | ATGAA | 9 cut(s) | 264, 486, 624, 1004, 1164, 1290, 1581, 1745, 2535 |
| TspGWI | ACGGA | 2 cut(s) | 349, 1729 |
| TspRI | CASTG | 1 cut(s) | 1624 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1100 |
| Vha464I | CTTAAG | 1 cut(s) | 1672 |
| VpaK11BI | GGWCC | 3 cut(s) | 161, 411, 635 |
| XapI | RAATTY | 9 cut(s) | 74, 627, 694, 775, 1677, 1923, 2771, 2808, 2897 |
| XbaI | TCTAGA | 4 cut(s) | 191, 901, 1843, 2794 |
| XceI | RCATGY | 3 cut(s) | 1323, 1609, 2736 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1545, 2193 |
| ZraI | GACGTC | 1 cut(s) | 1384 |
| Zsp2I | ATGCAT | 1 cut(s) | 1458 |