TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 188 | 2.5e-60 | TIR domain |
| TIR_2 | PF13676 | 15 - 111 | 1.6e-10 | TIR domain |
| NB-ARC | PF00931 | 191 - 364 | 1.6e-15 | NB-ARC domain |
| AAA_22 | PF13401 | 209 - 312 | 9.9e-06 | AAA domain |
| WHD_ROQ1 | PF23282 | 431 - 503 | 1.9e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 607 - 625 | 3.1e-07 | Leucine Rich Repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2900 |
| Acc16I | TGCGCA | 1 cut(s) | 2771 |
| AccI | GTMKAC | 2 cut(s) | 662, 1486 |
| AccII | CGCG | 2 cut(s) | 2128, 2239 |
| AciI | CCGC | 5 cut(s) | 647, 1143, 1704, 2756, 3107 |
| AclWI | GGATC | 9 cut(s) | 144, 320, 484, 974, 1019, 1235, 1594, 1779, 2227 |
| AcsI | RAATTY | 7 cut(s) | 589, 633, 773, 1802, 2197, 2629, 3238 |
| AcuI | CTGAAG | 2 cut(s) | 1566, 2060 |
| AfaI | GTAC | 9 cut(s) | 339, 837, 1098, 1134, 1563, 1582, 1714, 2659, 2955 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 2209, 2711 |
| AflII | CTTAAG | 1 cut(s) | 743 |
| AjiI | CACGTC | 1 cut(s) | 2998 |
| AjnI | CCWGG | 3 cut(s) | 2584, 2664, 2806 |
| Alw21I | GWGCWC | 1 cut(s) | 177 |
| Alw26I | GTCTC | 8 cut(s) | 208, 789, 1076, 1823, 1955, 2232, 2357, 2808 |
| AlwI | GGATC | 9 cut(s) | 144, 320, 484, 974, 1019, 1235, 1594, 1779, 2227 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1583 |
| Ama87I | CYCGRG | 4 cut(s) | 1517, 1850, 1958, 2426 |
| AoxI | GGCC | 3 cut(s) | 61, 292, 1159 |
| ApoI | RAATTY | 7 cut(s) | 589, 633, 773, 1802, 2197, 2629, 3238 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 409, 441 |
| AseI | ATTAAT | 1 cut(s) | 1440 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1551 |
| AspA2I | CCTAGG | 1 cut(s) | 1223 |
| AspLEI | GCGC | 3 cut(s) | 2239, 2241, 2772 |
| AspS9I | GGNCC | 5 cut(s) | 62, 167, 292, 417, 641 |
| AsuC2I | CCSGG | 3 cut(s) | 1518, 1519, 2655 |
| AsuHPI | GGTGA | 1 cut(s) | 415 |
| AsuII | TTCGAA | 3 cut(s) | 221, 1943, 2015 |
| AvaI | CYCGRG | 4 cut(s) | 1517, 1850, 1958, 2426 |
| AvaII | GGWCC | 3 cut(s) | 167, 417, 641 |
| AvrII | CCTAGG | 1 cut(s) | 1223 |
| BanII | GRGCYC | 2 cut(s) | 177, 1518 |
| BauI | CACGAG | 3 cut(s) | 1202, 2396, 3243 |
| BbsI | GAAGAC | 3 cut(s) | 3, 1409, 1784 |
| Bbv12I | GWGCWC | 1 cut(s) | 177 |
| BccI | CCATC | 8 cut(s) | 317, 408, 550, 1097, 1238, 1440, 1470, 2215 |
| BceAI | ACGGC | 1 cut(s) | 2804 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 196, 230, 2377, 2411 |
| BciT130I | CCWGG | 3 cut(s) | 2586, 2666, 2808 |
| BclI | TGATCA | 1 cut(s) | 763 |
| BcnI | CCSGG | 3 cut(s) | 1518, 1519, 2655 |
| BcoDI | GTCTC | 8 cut(s) | 208, 789, 1076, 1823, 1955, 2232, 2357, 2808 |
| BfaI | CTAG | 7 cut(s) | 198, 672, 696, 911, 1224, 1409, 2363 |
| BfmI | CTRYAG | 4 cut(s) | 504, 1336, 2386, 2622 |
| BfrI | CTTAAG | 1 cut(s) | 743 |
| BglII | AGATCT | 2 cut(s) | 1062, 1900 |
| BlnI | CCTAGG | 1 cut(s) | 1223 |
| BmcAI | AGTACT | 1 cut(s) | 1563 |
| Bme1390I | CCNGG | 6 cut(s) | 1518, 1519, 2586, 2655, 2666, 2808 |
| Bme18I | GGWCC | 3 cut(s) | 167, 417, 641 |
| BmeT110I | CYCGRG | 4 cut(s) | 1517, 1850, 1958, 2426 |
| BmgBI | CACGTC | 1 cut(s) | 2998 |
| BmgT120I | GGNCC | 5 cut(s) | 62, 167, 292, 417, 641 |
| BmiI | GGNNCC | 4 cut(s) | 642, 728, 1676, 2652 |
| BmrFI | CCNGG | 6 cut(s) | 1518, 1519, 2586, 2655, 2666, 2808 |
| BmsI | GCATC | 5 cut(s) | 1446, 2102, 2462, 2748, 2781 |
| BpiI | GAAGAC | 3 cut(s) | 3, 1409, 1784 |
| Bpu10I | CCTNAGC | 2 cut(s) | 171, 2976 |
| Bpu14I | TTCGAA | 3 cut(s) | 221, 1943, 2015 |
| BpuEI | CTTGAG | 9 cut(s) | 716, 1079, 2120, 2137, 2249, 2264, 2444, 2659, 3126 |
| BpuMI | CCSGG | 3 cut(s) | 1518, 1519, 2655 |
| BsaBI | GATNNNNATC | 2 cut(s) | 308, 324 |
| BsaI | GGTCTC | 2 cut(s) | 2232, 2808 |
| BsaJI | CCNNGG | 7 cut(s) | 58, 820, 1044, 1223, 1517, 2420, 2807 |
| BsaWI | WCCGGW | 1 cut(s) | 1671 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 2209, 2711 |
| Bse1I | ACTGG | 4 cut(s) | 1588, 2526, 2561, 2705 |
| Bse3DI | GCAATG | 3 cut(s) | 666, 1317, 2772 |
| Bse8I | GATNNNNATC | 2 cut(s) | 308, 324 |
| BseBI | CCWGG | 3 cut(s) | 2586, 2666, 2808 |
| BseDI | CCNNGG | 7 cut(s) | 58, 820, 1044, 1223, 1517, 2420, 2807 |
| BseGI | GGATG | 5 cut(s) | 561, 1390, 1451, 1613, 2530 |
| BseJI | GATNNNNATC | 2 cut(s) | 308, 324 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 2209, 2711 |
| BseMI | GCAATG | 3 cut(s) | 666, 1317, 2772 |
| BseMII | CTCAG | 7 cut(s) | 100, 162, 538, 1895, 3042, 3078, 3197 |
| BseNI | ACTGG | 5 cut(s) | 1588, 2526, 2561, 2705, 3162 |
| BsePI | GCGCGC | 1 cut(s) | 2237 |
| BseRI | GAGGAG | 3 cut(s) | 413, 1740, 1996 |
| BseYI | CCCAGC | 1 cut(s) | 2599 |
| BsgI | GTGCAG | 1 cut(s) | 1578 |
| Bsh1236I | CGCG | 2 cut(s) | 2128, 2239 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2839 |
| BshFI | GGCC | 3 cut(s) | 63, 294, 1161 |
| BsiEI | CGRYCG | 1 cut(s) | 2839 |
| BsiHKAI | GWGCWC | 1 cut(s) | 177 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1517, 1850, 1958, 2426 |
| BsiSI | CCGG | 6 cut(s) | 964, 1518, 1672, 1811, 2408, 2655 |
| BslFI | GGGAC | 2 cut(s) | 2416, 2824 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 2209, 2711 |
| BsmAI | GTCTC | 8 cut(s) | 208, 789, 1076, 1823, 1955, 2232, 2357, 2808 |
| BsmBI | CGTCTC | 1 cut(s) | 1823 |
| BsmFI | GGGAC | 2 cut(s) | 2416, 2824 |
| BsmI | GAATGC | 2 cut(s) | 1665, 1951 |
| BsnI | GGCC | 3 cut(s) | 63, 294, 1161 |
| Bso31I | GGTCTC | 2 cut(s) | 2232, 2808 |
| BsoBI | CYCGRG | 4 cut(s) | 1517, 1850, 1958, 2426 |
| Bsp119I | TTCGAA | 3 cut(s) | 221, 1943, 2015 |
| Bsp1286I | GDGCHC | 2 cut(s) | 177, 1518 |
| Bsp1407I | TGTACA | 1 cut(s) | 2953 |
| Bsp19I | CCATGG | 2 cut(s) | 58, 1044 |
| Bsp68I | TCGCGA | 1 cut(s) | 2128 |
| BspACI | CCGC | 5 cut(s) | 647, 1143, 1704, 2756, 3107 |
| BspANI | GGCC | 3 cut(s) | 63, 294, 1161 |
| BspCNI | CTCAG | 7 cut(s) | 99, 163, 537, 1896, 3043, 3079, 3198 |
| BspFNI | CGCG | 2 cut(s) | 2128, 2239 |
| BspHI | TCATGA | 3 cut(s) | 372, 2961, 3254 |
| BspLI | GGNNCC | 4 cut(s) | 642, 728, 1676, 2652 |
| BspMAI | CTGCAG | 1 cut(s) | 2390 |
| BspPI | GGATC | 9 cut(s) | 144, 320, 484, 974, 1019, 1235, 1594, 1779, 2227 |
| BspQI | GCTCTTC | 2 cut(s) | 1107, 2418 |
| BspT104I | TTCGAA | 3 cut(s) | 221, 1943, 2015 |
| BspTI | CTTAAG | 1 cut(s) | 743 |
| BspTNI | GGTCTC | 2 cut(s) | 2232, 2808 |
| BsrDI | GCAATG | 3 cut(s) | 666, 1317, 2772 |
| BsrGI | TGTACA | 1 cut(s) | 2953 |
| BsrI | ACTGG | 5 cut(s) | 1588, 2526, 2561, 2705, 3162 |
| BssECI | CCNNGG | 7 cut(s) | 58, 820, 1044, 1223, 1517, 2420, 2807 |
| BssHII | GCGCGC | 1 cut(s) | 2237 |
| BssSI | CACGAG | 3 cut(s) | 1202, 2396, 3243 |
| BssT1I | CCWWGG | 5 cut(s) | 58, 820, 1044, 1223, 2420 |
| Bst2BI | CACGAG | 3 cut(s) | 1202, 2396, 3243 |
| Bst2UI | CCWGG | 3 cut(s) | 2586, 2666, 2808 |
| Bst4CI | ACNGT | 7 cut(s) | 1360, 1376, 1506, 2318, 2513, 2837, 2894 |
| Bst6I | CTCTTC | 4 cut(s) | 1107, 1542, 2418, 2533 |
| BstAFI | CTTAAG | 1 cut(s) | 743 |
| BstAUI | TGTACA | 1 cut(s) | 2953 |
| BstBI | TTCGAA | 3 cut(s) | 221, 1943, 2015 |
| BstC8I | GCNNGC | 8 cut(s) | 112, 1119, 1199, 1324, 1368, 2126, 2239, 2689 |
| BstDSI | CCRYGG | 2 cut(s) | 58, 1044 |
| BstF5I | GGATG | 5 cut(s) | 561, 1390, 1451, 1613, 2530 |
| BstFNI | CGCG | 2 cut(s) | 2128, 2239 |
| BstHHI | GCGC | 3 cut(s) | 2239, 2241, 2772 |
| BstMAI | GTCTC | 8 cut(s) | 208, 789, 1076, 1823, 1955, 2232, 2357, 2808 |
| BstMCI | CGRYCG | 1 cut(s) | 2839 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 60, 479, 609, 2259, 2481, 2762, 2991 |
| BstNI | CCWGG | 3 cut(s) | 2586, 2666, 2808 |
| BstNSI | RCATGY | 2 cut(s) | 1326, 2282 |
| BstSCI | CCNGG | 6 cut(s) | 1516, 1517, 2584, 2653, 2664, 2806 |
| BstSFI | CTRYAG | 4 cut(s) | 504, 1336, 2386, 2622 |
| BstUI | CGCG | 2 cut(s) | 2128, 2239 |
| BstV2I | GAAGAC | 3 cut(s) | 3, 1409, 1784 |
| BstX2I | RGATCY | 3 cut(s) | 1062, 1900, 2219 |
| BstYI | RGATCY | 3 cut(s) | 1062, 1900, 2219 |
| BsuRI | GGCC | 3 cut(s) | 63, 294, 1161 |
| BtgI | CCRYGG | 2 cut(s) | 58, 1044 |
| BtgZI | GCGATG | 2 cut(s) | 627, 2928 |
| BtrI | CACGTC | 1 cut(s) | 2998 |
| BtsCI | GGATG | 5 cut(s) | 561, 1390, 1451, 1613, 2530 |
| BtsI | GCAGTG | 1 cut(s) | 1978 |
| BtsIMutI | CAGTG | 3 cut(s) | 532, 1978, 2323 |
| BtuMI | TCGCGA | 1 cut(s) | 2128 |
| Cac8I | GCNNGC | 8 cut(s) | 112, 1119, 1199, 1324, 1368, 2126, 2239, 2689 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1583 |
| CciI | TCATGA | 3 cut(s) | 372, 2961, 3254 |
| CfoI | GCGC | 3 cut(s) | 2239, 2241, 2772 |
| Cfr13I | GGNCC | 5 cut(s) | 62, 167, 292, 417, 641 |
| Cfr9I | CCCGGG | 1 cut(s) | 1517 |
| CseI | GACGC | 1 cut(s) | 2332 |
| CsiI | ACCWGGT | 1 cut(s) | 2584 |
| Csp6I | GTAC | 9 cut(s) | 338, 836, 1097, 1133, 1562, 1581, 1713, 2658, 2954 |
| CviQI | GTAC | 9 cut(s) | 338, 836, 1097, 1133, 1562, 1581, 1713, 2658, 2954 |
| DraI | TTTAAA | 1 cut(s) | 3132 |
| Eam1104I | CTCTTC | 4 cut(s) | 1107, 1542, 2418, 2533 |
| EarI | CTCTTC | 4 cut(s) | 1107, 1542, 2418, 2533 |
| Ecl136II | GAGCTC | 1 cut(s) | 175 |
| Eco130I | CCWWGG | 5 cut(s) | 58, 820, 1044, 1223, 2420 |
| Eco147I | AGGCCT | 1 cut(s) | 1161 |
| Eco24I | GRGCYC | 2 cut(s) | 177, 1518 |
| Eco31I | GGTCTC | 2 cut(s) | 2232, 2808 |
| Eco32I | GATATC | 2 cut(s) | 1021, 2149 |
| Eco47I | GGWCC | 3 cut(s) | 167, 417, 641 |
| Eco53kI | GAGCTC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 2 cut(s) | 1566, 2060 |
| Eco88I | CYCGRG | 4 cut(s) | 1517, 1850, 1958, 2426 |
| EcoICRI | GAGCTC | 1 cut(s) | 175 |
| EcoO109I | RGGNCCY | 1 cut(s) | 641 |
| EcoRI | GAATTC | 4 cut(s) | 589, 773, 2629, 3238 |
| EcoRII | CCWGG | 3 cut(s) | 2584, 2664, 2806 |
| EcoRV | GATATC | 2 cut(s) | 1021, 2149 |
| EcoT14I | CCWWGG | 5 cut(s) | 58, 820, 1044, 1223, 2420 |
| EcoT38I | GRGCYC | 2 cut(s) | 177, 1518 |
| ErhI | CCWWGG | 5 cut(s) | 58, 820, 1044, 1223, 2420 |
| Esp3I | CGTCTC | 1 cut(s) | 1823 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1041, 1073, 1224, 1256, 2675, 2707 |
| FaqI | GGGAC | 2 cut(s) | 2416, 2824 |
| FauI | CCCGC | 2 cut(s) | 640, 2749 |
| FauNDI | CATATG | 1 cut(s) | 1833 |
| FbaI | TGATCA | 1 cut(s) | 763 |
| FblI | GTMKAC | 2 cut(s) | 662, 1486 |
| FokI | GGATG | 5 cut(s) | 568, 1397, 1458, 1600, 2537 |
| FriOI | GRGCYC | 2 cut(s) | 177, 1518 |
| FspAI | RTGCGCAY | 1 cut(s) | 2771 |
| FspBI | CTAG | 7 cut(s) | 198, 672, 696, 911, 1224, 1409, 2363 |
| FspI | TGCGCA | 1 cut(s) | 2771 |
| GlaI | GCGC | 3 cut(s) | 2238, 2240, 2771 |
| GsaI | CCCAGC | 1 cut(s) | 2603 |
| HaeIII | GGCC | 3 cut(s) | 63, 294, 1161 |
| HapII | CCGG | 6 cut(s) | 964, 1518, 1672, 1811, 2408, 2655 |
| HgaI | GACGC | 1 cut(s) | 2332 |
| HhaI | GCGC | 3 cut(s) | 2239, 2241, 2772 |
| Hin6I | GCGC | 3 cut(s) | 2237, 2239, 2770 |
| HinP1I | GCGC | 3 cut(s) | 2237, 2239, 2770 |
| HincII | GTYRAC | 1 cut(s) | 2566 |
| HindII | GTYRAC | 1 cut(s) | 2566 |
| HindIII | AAGCTT | 2 cut(s) | 52, 423 |
| HpaII | CCGG | 6 cut(s) | 964, 1518, 1672, 1811, 2408, 2655 |
| HphI | GGTGA | 1 cut(s) | 415 |
| Hpy166II | GTNNAC | 8 cut(s) | 338, 663, 1487, 2566, 2954, 3001, 3167, 3192 |
| Hpy188I | TCNGA | 9 cut(s) | 362, 563, 1510, 1625, 1905, 2111, 2180, 2797, 3207 |
| Hpy8I | GTNNAC | 8 cut(s) | 338, 663, 1487, 2566, 2954, 3001, 3167, 3192 |
| Hpy99I | CGWCG | 4 cut(s) | 334, 2139, 2381, 2999 |
| HpyCH4III | ACNGT | 7 cut(s) | 1360, 1376, 1506, 2318, 2513, 2837, 2894 |
| HpyCH4IV | ACGT | 5 cut(s) | 1353, 1525, 1816, 2137, 2997 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 60, 479, 609, 2259, 2481, 2762, 2991 |
| HpySE526I | ACGT | 5 cut(s) | 1353, 1525, 1816, 2137, 2997 |
| HspAI | GCGC | 3 cut(s) | 2237, 2239, 2770 |
| Ksp22I | TGATCA | 1 cut(s) | 763 |
| LguI | GCTCTTC | 2 cut(s) | 1107, 2418 |
| LmnI | GCTCC | 1 cut(s) | 2656 |
| LweI | GCATC | 5 cut(s) | 1446, 2102, 2462, 2748, 2781 |
| MabI | ACCWGGT | 1 cut(s) | 2584 |
| MaeI | CTAG | 7 cut(s) | 198, 672, 696, 911, 1224, 1409, 2363 |
| MaeII | ACGT | 5 cut(s) | 1353, 1525, 1816, 2137, 2997 |
| MaeIII | GTNAC | 8 cut(s) | 529, 1354, 1376, 1758, 2156, 2398, 2612, 2707 |
| MfeI | CAATTG | 1 cut(s) | 1478 |
| MflI | RGATCY | 3 cut(s) | 1062, 1900, 2219 |
| MhlI | GDGCHC | 2 cut(s) | 177, 1518 |
| MlyI | GAGTC | 5 cut(s) | 203, 210, 424, 2161, 2438 |
| MmeI | TCCRAC | 3 cut(s) | 541, 2158, 3161 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1551 |
| MslI | CAYNNNNRTG | 2 cut(s) | 371, 1361 |
| MspCI | CTTAAG | 1 cut(s) | 743 |
| MspI | CCGG | 6 cut(s) | 964, 1518, 1672, 1811, 2408, 2655 |
| MspR9I | CCNGG | 6 cut(s) | 1518, 1519, 2586, 2655, 2666, 2808 |
| MunI | CAATTG | 1 cut(s) | 1478 |
| Mva1269I | GAATGC | 2 cut(s) | 1665, 1951 |
| MvaI | CCWGG | 3 cut(s) | 2586, 2666, 2808 |
| MvnI | CGCG | 2 cut(s) | 2128, 2239 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 60, 479, 609, 2259, 2481, 2762, 2991 |
| NciI | CCSGG | 3 cut(s) | 1518, 1519, 2655 |
| NcoI | CCATGG | 2 cut(s) | 58, 1044 |
| NdeI | CATATG | 1 cut(s) | 1833 |
| NlaIV | GGNNCC | 4 cut(s) | 642, 728, 1676, 2652 |
| NmuCI | GTSAC | 3 cut(s) | 1354, 2398, 2612 |
| NruI | TCGCGA | 1 cut(s) | 2128 |
| NsbI | TGCGCA | 1 cut(s) | 2771 |
| NspI | RCATGY | 2 cut(s) | 1326, 2282 |
| NspV | TTCGAA | 3 cut(s) | 221, 1943, 2015 |
| PaeI | GCATGC | 1 cut(s) | 1326 |
| PaeR7I | CTCGAG | 3 cut(s) | 1850, 1958, 2426 |
| PagI | TCATGA | 3 cut(s) | 372, 2961, 3254 |
| PauI | GCGCGC | 1 cut(s) | 2237 |
| PceI | AGGCCT | 1 cut(s) | 1161 |
| PciSI | GCTCTTC | 2 cut(s) | 1107, 2418 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1014 |
| PctI | GAATGC | 2 cut(s) | 1665, 1951 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1551 |
| PfeI | GAWTC | 7 cut(s) | 120, 1552, 1683, 1869, 2017, 2332, 3249 |
| PleI | GAGTC | 5 cut(s) | 202, 209, 424, 2161, 2437 |
| PpsI | GAGTC | 5 cut(s) | 202, 209, 424, 2161, 2437 |
| PpuMI | RGGWCCY | 1 cut(s) | 641 |
| PshBI | ATTAAT | 1 cut(s) | 1440 |
| PsiI | TTATAA | 1 cut(s) | 2900 |
| Psp124BI | GAGCTC | 1 cut(s) | 177 |
| Psp5II | RGGWCCY | 1 cut(s) | 641 |
| Psp6I | CCWGG | 3 cut(s) | 2584, 2664, 2806 |
| PspFI | CCCAGC | 1 cut(s) | 2599 |
| PspGI | CCWGG | 3 cut(s) | 2584, 2664, 2806 |
| PspN4I | GGNNCC | 4 cut(s) | 642, 728, 1676, 2652 |
| PspPI | GGNCC | 5 cut(s) | 62, 167, 292, 417, 641 |
| PspPPI | RGGWCCY | 1 cut(s) | 641 |
| PspXI | VCTCGAGB | 1 cut(s) | 2426 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1203, 1235 |
| PstI | CTGCAG | 1 cut(s) | 2390 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1583 |
| PsuI | RGATCY | 3 cut(s) | 1062, 1900, 2219 |
| PteI | GCGCGC | 1 cut(s) | 2237 |
| RruI | TCGCGA | 1 cut(s) | 2128 |
| RsaI | GTAC | 9 cut(s) | 339, 837, 1098, 1134, 1563, 1582, 1714, 2659, 2955 |
| RsaNI | GTAC | 9 cut(s) | 338, 836, 1097, 1133, 1562, 1581, 1713, 2658, 2954 |
| RseI | CAYNNNNRTG | 2 cut(s) | 371, 1361 |
| SacI | GAGCTC | 1 cut(s) | 177 |
| SapI | GCTCTTC | 2 cut(s) | 1107, 2418 |
| Sau96I | GGNCC | 5 cut(s) | 62, 167, 292, 417, 641 |
| ScaI | AGTACT | 1 cut(s) | 1563 |
| SchI | GAGTC | 5 cut(s) | 203, 210, 424, 2161, 2438 |
| ScrFI | CCNGG | 6 cut(s) | 1518, 1519, 2586, 2655, 2666, 2808 |
| SduI | GDGCHC | 2 cut(s) | 177, 1518 |
| SexAI | ACCWGGT | 1 cut(s) | 2584 |
| SfaNI | GCATC | 5 cut(s) | 1446, 2102, 2462, 2748, 2781 |
| SfcI | CTRYAG | 4 cut(s) | 504, 1336, 2386, 2622 |
| Sfr274I | CTCGAG | 3 cut(s) | 1850, 1958, 2426 |
| SfuI | TTCGAA | 3 cut(s) | 221, 1943, 2015 |
| SinI | GGWCC | 3 cut(s) | 167, 417, 641 |
| SlaI | CTCGAG | 3 cut(s) | 1850, 1958, 2426 |
| SmaI | CCCGGG | 1 cut(s) | 1519 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 371, 1361 |
| SphI | GCATGC | 1 cut(s) | 1326 |
| SseBI | AGGCCT | 1 cut(s) | 1161 |
| SsiI | CCGC | 5 cut(s) | 647, 1143, 1704, 2756, 3107 |
| SspMI | CTAG | 7 cut(s) | 198, 672, 696, 911, 1224, 1409, 2363 |
| SstI | GAGCTC | 1 cut(s) | 177 |
| StuI | AGGCCT | 1 cut(s) | 1161 |
| StyD4I | CCNGG | 6 cut(s) | 1516, 1517, 2584, 2653, 2664, 2806 |
| StyI | CCWWGG | 5 cut(s) | 58, 820, 1044, 1223, 2420 |
| TaaI | ACNGT | 7 cut(s) | 1360, 1376, 1506, 2318, 2513, 2837, 2894 |
| TaiI | ACGT | 5 cut(s) | 1356, 1528, 1819, 2140, 3000 |
| TatI | WGTACW | 4 cut(s) | 1132, 1561, 1712, 2953 |
| TauI | GCSGC | 1 cut(s) | 1707 |
| TfiI | GAWTC | 7 cut(s) | 120, 1552, 1683, 1869, 2017, 2332, 3249 |
| TscAI | CASTG | 3 cut(s) | 532, 1985, 2323 |
| TseFI | GTSAC | 3 cut(s) | 1354, 2398, 2612 |
| Tsp45I | GTSAC | 3 cut(s) | 1354, 2398, 2612 |
| TspGWI | ACGGA | 6 cut(s) | 318, 355, 1029, 1143, 2828, 2981 |
| TspMI | CCCGGG | 1 cut(s) | 1517 |
| TspRI | CASTG | 3 cut(s) | 532, 1985, 2323 |
| Vha464I | CTTAAG | 1 cut(s) | 743 |
| VpaK11BI | GGWCC | 3 cut(s) | 167, 417, 641 |
| VspI | ATTAAT | 1 cut(s) | 1440 |
| XapI | RAATTY | 7 cut(s) | 589, 633, 773, 1802, 2197, 2629, 3238 |
| XbaI | TCTAGA | 2 cut(s) | 197, 910 |
| XceI | RCATGY | 2 cut(s) | 1326, 2282 |
| XhoI | CTCGAG | 3 cut(s) | 1850, 1958, 2426 |
| XmaI | CCCGGG | 1 cut(s) | 1517 |
| XmaJI | CCTAGG | 1 cut(s) | 1223 |
| XmiI | GTMKAC | 2 cut(s) | 662, 1486 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1551 |
| XspI | CTAG | 7 cut(s) | 198, 672, 696, 911, 1224, 1409, 2363 |
| ZrmI | AGTACT | 1 cut(s) | 1563 |