Disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 188 | 2.8e-59 | TIR domain |
| TIR_2 | PF13676 | 15 - 110 | 2.7e-10 | TIR domain |
| NB-ARC | PF00931 | 190 - 361 | 3.6e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 429 - 499 | 7.9e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 604 - 623 | 1e-06 | Leucine Rich Repeat |
| LRR_13 | PF23286 | 625 - 818 | 1.4e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2207, 2860 |
| AccI | GTMKAC | 1 cut(s) | 1477 |
| AciI | CCGC | 1 cut(s) | 1134 |
| AclWI | GGATC | 8 cut(s) | 320, 403, 484, 923, 965, 1226, 2578, 2613 |
| AcsI | RAATTY | 3 cut(s) | 633, 1821, 3187 |
| AcuI | CTGAAG | 2 cut(s) | 945, 2610 |
| AfaI | GTAC | 8 cut(s) | 230, 1557, 1576, 1708, 2271, 2555, 2647, 2937 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 450, 2207, 2482, 2860 |
| AflIII | ACRYGT | 1 cut(s) | 433 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1276 |
| AjnI | CCWGG | 4 cut(s) | 603, 2415, 2572, 2641 |
| Alw21I | GWGCWC | 3 cut(s) | 177, 219, 876 |
| Alw26I | GTCTC | 7 cut(s) | 208, 1067, 1680, 2092, 2223, 2345, 2405 |
| AlwI | GGATC | 8 cut(s) | 320, 403, 484, 923, 965, 1226, 2578, 2613 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1577 |
| Ama87I | CYCGRG | 2 cut(s) | 1511, 1952 |
| AoxI | GGCC | 3 cut(s) | 154, 1150, 1499 |
| ApeKI | GCWGC | 6 cut(s) | 1836, 2244, 2373, 2763, 3006, 3009 |
| ApoI | RAATTY | 3 cut(s) | 633, 1821, 3187 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1545 |
| AspS9I | GGNCC | 4 cut(s) | 62, 167, 641, 2419 |
| AsuC2I | CCSGG | 3 cut(s) | 1512, 1513, 1805 |
| AsuHPI | GGTGA | 6 cut(s) | 415, 2222, 2837, 2924, 2975, 3041 |
| AsuII | TTCGAA | 1 cut(s) | 1937 |
| AsuNHI | GCTAGC | 1 cut(s) | 1357 |
| AvaI | CYCGRG | 2 cut(s) | 1511, 1952 |
| AvaII | GGWCC | 4 cut(s) | 62, 167, 641, 2419 |
| BaeGI | GKGCMC | 1 cut(s) | 2488 |
| BanII | GRGCYC | 2 cut(s) | 177, 1512 |
| BauI | CACGAG | 1 cut(s) | 1415 |
| BbsI | GAAGAC | 3 cut(s) | 3, 383, 1778 |
| Bbv12I | GWGCWC | 3 cut(s) | 177, 219, 876 |
| BbvCI | CCTCAGC | 1 cut(s) | 2958 |
| BbvI | GCAGC | 6 cut(s) | 1848, 2256, 2360, 2750, 3018, 3021 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 196, 230 |
| BciT130I | CCWGG | 4 cut(s) | 605, 2417, 2574, 2643 |
| BclI | TGATCA | 2 cut(s) | 136, 2227 |
| BcnI | CCSGG | 3 cut(s) | 1512, 1513, 1805 |
| BcoDI | GTCTC | 7 cut(s) | 208, 1067, 1680, 2092, 2223, 2345, 2405 |
| BfmI | CTRYAG | 4 cut(s) | 645, 1681, 1909, 2374 |
| BglII | AGATCT | 2 cut(s) | 1053, 1409 |
| BisI | GCNGC | 7 cut(s) | 1135, 1837, 2245, 2374, 2764, 3007, 3010 |
| BlpI | GCTNAGC | 1 cut(s) | 1125 |
| BlsI | GCNGC | 7 cut(s) | 1136, 1838, 2246, 2375, 2765, 3008, 3011 |
| Bme1390I | CCNGG | 7 cut(s) | 605, 1512, 1513, 1805, 2417, 2574, 2643 |
| Bme18I | GGWCC | 4 cut(s) | 62, 167, 641, 2419 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1276 |
| BmeT110I | CYCGRG | 2 cut(s) | 1511, 1952 |
| BmgT120I | GGNCC | 4 cut(s) | 62, 167, 641, 2419 |
| BmiI | GGNNCC | 1 cut(s) | 642 |
| BmrFI | CCNGG | 7 cut(s) | 605, 1512, 1513, 1805, 2417, 2574, 2643 |
| BmsI | GCATC | 6 cut(s) | 36, 1178, 1437, 2096, 2340, 2416 |
| BmtI | GCTAGC | 1 cut(s) | 1361 |
| BpiI | GAAGAC | 3 cut(s) | 3, 383, 1778 |
| BpmI | CTGGAG | 4 cut(s) | 2045, 2131, 2399, 3054 |
| Bpu10I | CCTNAGC | 2 cut(s) | 171, 2958 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1125 |
| Bpu14I | TTCGAA | 1 cut(s) | 1937 |
| BpuMI | CCSGG | 3 cut(s) | 1512, 1513, 1805 |
| BsaI | GGTCTC | 3 cut(s) | 2223, 2345, 2405 |
| BsaJI | CCNNGG | 5 cut(s) | 58, 1035, 1511, 2641, 2839 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 450, 2207, 2482, 2860 |
| Bse1I | ACTGG | 6 cut(s) | 2028, 2116, 2693, 3037, 3126, 3142 |
| Bse3DI | GCAATG | 4 cut(s) | 444, 666, 1308, 2758 |
| BseBI | CCWGG | 4 cut(s) | 605, 2417, 2574, 2643 |
| BseDI | CCNNGG | 5 cut(s) | 58, 1035, 1511, 2641, 2839 |
| BseGI | GGATG | 9 cut(s) | 561, 570, 1031, 1381, 1607, 2216, 2521, 2628, 2869 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 450, 2207, 2482, 2860 |
| BseMI | GCAATG | 4 cut(s) | 444, 666, 1308, 2758 |
| BseMII | CTCAG | 8 cut(s) | 100, 162, 789, 1116, 1805, 2503, 2949, 2988 |
| BseNI | ACTGG | 6 cut(s) | 2028, 2116, 2693, 3037, 3126, 3142 |
| BseRI | GAGGAG | 2 cut(s) | 413, 2398 |
| BseSI | GKGCMC | 1 cut(s) | 2488 |
| BseXI | GCAGC | 6 cut(s) | 1848, 2256, 2360, 2750, 3018, 3021 |
| BseYI | CCCAGC | 1 cut(s) | 449 |
| Bsh1285I | CGRYCG | 2 cut(s) | 165, 210 |
| BshFI | GGCC | 3 cut(s) | 156, 1152, 1501 |
| BsiEI | CGRYCG | 2 cut(s) | 165, 210 |
| BsiHKAI | GWGCWC | 3 cut(s) | 177, 219, 876 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1511, 1952 |
| BsiSI | CCGG | 2 cut(s) | 1512, 1805 |
| BslFI | GGGAC | 2 cut(s) | 2180, 2623 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 450, 2207, 2482, 2860 |
| BsmAI | GTCTC | 7 cut(s) | 208, 1067, 1680, 2092, 2223, 2345, 2405 |
| BsmFI | GGGAC | 2 cut(s) | 2180, 2623 |
| BsmI | GAATGC | 2 cut(s) | 1070, 1659 |
| BsnI | GGCC | 3 cut(s) | 156, 1152, 1501 |
| Bso31I | GGTCTC | 3 cut(s) | 2223, 2345, 2405 |
| BsoBI | CYCGRG | 2 cut(s) | 1511, 1952 |
| Bsp119I | TTCGAA | 1 cut(s) | 1937 |
| Bsp1286I | GDGCHC | 5 cut(s) | 177, 219, 876, 1512, 2488 |
| Bsp1407I | TGTACA | 2 cut(s) | 2553, 2935 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1125 |
| BspACI | CCGC | 1 cut(s) | 1134 |
| BspANI | GGCC | 3 cut(s) | 156, 1152, 1501 |
| BspCNI | CTCAG | 8 cut(s) | 99, 163, 790, 1117, 1804, 2502, 2950, 2989 |
| BspHI | TCATGA | 3 cut(s) | 1489, 2943, 3203 |
| BspLI | GGNNCC | 1 cut(s) | 642 |
| BspMAI | CTGCAG | 2 cut(s) | 649, 2378 |
| BspOI | GCTAGC | 1 cut(s) | 1361 |
| BspPI | GGATC | 8 cut(s) | 320, 403, 484, 923, 965, 1226, 2578, 2613 |
| BspQI | GCTCTTC | 2 cut(s) | 1098, 1178 |
| BspT104I | TTCGAA | 1 cut(s) | 1937 |
| BspTNI | GGTCTC | 3 cut(s) | 2223, 2345, 2405 |
| BsrDI | GCAATG | 4 cut(s) | 444, 666, 1308, 2758 |
| BsrGI | TGTACA | 2 cut(s) | 2553, 2935 |
| BsrI | ACTGG | 6 cut(s) | 2028, 2116, 2693, 3037, 3126, 3142 |
| BssECI | CCNNGG | 5 cut(s) | 58, 1035, 1511, 2641, 2839 |
| BssSI | CACGAG | 1 cut(s) | 1415 |
| BssT1I | CCWWGG | 1 cut(s) | 2839 |
| Bst2BI | CACGAG | 1 cut(s) | 1415 |
| Bst2UI | CCWGG | 4 cut(s) | 605, 2417, 2574, 2643 |
| Bst4CI | ACNGT | 7 cut(s) | 62, 101, 310, 537, 1497, 2504, 2969 |
| Bst6I | CTCTTC | 5 cut(s) | 1098, 1178, 1536, 1614, 2586 |
| BstAUI | TGTACA | 2 cut(s) | 2553, 2935 |
| BstBI | TTCGAA | 1 cut(s) | 1937 |
| BstC8I | GCNNGC | 7 cut(s) | 112, 779, 1110, 1315, 1359, 1841, 2768 |
| BstDSI | CCRYGG | 1 cut(s) | 58 |
| BstF5I | GGATG | 9 cut(s) | 561, 570, 1031, 1381, 1607, 2216, 2521, 2628, 2869 |
| BstMAI | GTCTC | 7 cut(s) | 208, 1067, 1680, 2092, 2223, 2345, 2405 |
| BstMCI | CGRYCG | 2 cut(s) | 165, 210 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 437, 446, 1358, 1507, 1849, 2250, 3160 |
| BstNI | CCWGG | 4 cut(s) | 605, 2417, 2574, 2643 |
| BstNSI | RCATGY | 4 cut(s) | 437, 1317, 1442, 2270 |
| BstSCI | CCNGG | 7 cut(s) | 603, 1510, 1511, 1803, 2415, 2572, 2641 |
| BstSFI | CTRYAG | 4 cut(s) | 645, 1681, 1909, 2374 |
| BstSLI | GKGCMC | 1 cut(s) | 2488 |
| BstV1I | GCAGC | 6 cut(s) | 1848, 2256, 2360, 2750, 3018, 3021 |
| BstV2I | GAAGAC | 3 cut(s) | 3, 383, 1778 |
| BstX2I | RGATCY | 6 cut(s) | 408, 928, 1053, 1409, 2583, 2618 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3059 |
| BstYI | RGATCY | 6 cut(s) | 408, 928, 1053, 1409, 2583, 2618 |
| BsuRI | GGCC | 3 cut(s) | 156, 1152, 1501 |
| BtgI | CCRYGG | 1 cut(s) | 58 |
| BtsCI | GGATG | 9 cut(s) | 561, 570, 1031, 1381, 1607, 2216, 2521, 2628, 2869 |
| BtsIMutI | CAGTG | 3 cut(s) | 106, 1502, 2556 |
| Cac8I | GCNNGC | 7 cut(s) | 112, 779, 1110, 1315, 1359, 1841, 2768 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1577 |
| CciI | TCATGA | 3 cut(s) | 1489, 2943, 3203 |
| Cfr13I | GGNCC | 4 cut(s) | 62, 167, 641, 2419 |
| Cfr9I | CCCGGG | 1 cut(s) | 1511 |
| CseI | GACGC | 1 cut(s) | 1166 |
| CsiI | ACCWGGT | 1 cut(s) | 2572 |
| Csp6I | GTAC | 8 cut(s) | 229, 1556, 1575, 1707, 2270, 2554, 2646, 2936 |
| CviQI | GTAC | 8 cut(s) | 229, 1556, 1575, 1707, 2270, 2554, 2646, 2936 |
| DraI | TTTAAA | 1 cut(s) | 712 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1276 |
| Eam1104I | CTCTTC | 5 cut(s) | 1098, 1178, 1536, 1614, 2586 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1276 |
| EarI | CTCTTC | 5 cut(s) | 1098, 1178, 1536, 1614, 2586 |
| Ecl136II | GAGCTC | 1 cut(s) | 175 |
| Eco130I | CCWWGG | 1 cut(s) | 2839 |
| Eco147I | AGGCCT | 1 cut(s) | 1152 |
| Eco24I | GRGCYC | 2 cut(s) | 177, 1512 |
| Eco31I | GGTCTC | 3 cut(s) | 2223, 2345, 2405 |
| Eco32I | GATATC | 2 cut(s) | 1012, 2143 |
| Eco47I | GGWCC | 4 cut(s) | 62, 167, 641, 2419 |
| Eco53kI | GAGCTC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 2 cut(s) | 945, 2610 |
| Eco88I | CYCGRG | 2 cut(s) | 1511, 1952 |
| EcoICRI | GAGCTC | 1 cut(s) | 175 |
| EcoO109I | RGGNCCY | 2 cut(s) | 641, 2419 |
| EcoRI | GAATTC | 1 cut(s) | 3187 |
| EcoRII | CCWGG | 4 cut(s) | 603, 2415, 2572, 2641 |
| EcoRV | GATATC | 2 cut(s) | 1012, 2143 |
| EcoT14I | CCWWGG | 1 cut(s) | 2839 |
| EcoT38I | GRGCYC | 2 cut(s) | 177, 1512 |
| ErhI | CCWWGG | 1 cut(s) | 2839 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 761, 793, 1032, 1064 |
| FaqI | GGGAC | 2 cut(s) | 2180, 2623 |
| FauNDI | CATATG | 1 cut(s) | 2564 |
| FbaI | TGATCA | 2 cut(s) | 136, 2227 |
| FblI | GTMKAC | 1 cut(s) | 1477 |
| Fnu4HI | GCNGC | 7 cut(s) | 1135, 1837, 2245, 2374, 2764, 3007, 3010 |
| FokI | GGATG | 9 cut(s) | 568, 577, 1018, 1388, 1594, 2223, 2528, 2615, 2876 |
| FriOI | GRGCYC | 2 cut(s) | 177, 1512 |
| Fsp4HI | GCNGC | 7 cut(s) | 1135, 1837, 2245, 2374, 2764, 3007, 3010 |
| GluI | GCNGC | 7 cut(s) | 1135, 1837, 2245, 2374, 2764, 3007, 3010 |
| GsaI | CCCAGC | 1 cut(s) | 453 |
| GsuI | CTGGAG | 4 cut(s) | 2045, 2131, 2399, 3054 |
| HaeIII | GGCC | 3 cut(s) | 156, 1152, 1501 |
| HapII | CCGG | 2 cut(s) | 1512, 1805 |
| HgaI | GACGC | 1 cut(s) | 1166 |
| HincII | GTYRAC | 1 cut(s) | 1281 |
| HindII | GTYRAC | 1 cut(s) | 1281 |
| HindIII | AAGCTT | 2 cut(s) | 285, 366 |
| HpaII | CCGG | 2 cut(s) | 1512, 1805 |
| HphI | GGTGA | 6 cut(s) | 415, 2222, 2837, 2924, 2975, 3041 |
| Hpy166II | GTNNAC | 7 cut(s) | 1281, 1478, 2554, 2598, 2936, 3019, 3131 |
| Hpy8I | GTNNAC | 7 cut(s) | 1281, 1478, 2554, 2598, 2936, 3019, 3131 |
| Hpy99I | CGWCG | 2 cut(s) | 541, 1182 |
| HpyAV | CCTTC | 7 cut(s) | 942, 985, 1313, 1643, 1697, 1883, 3083 |
| HpyCH4III | ACNGT | 7 cut(s) | 62, 101, 310, 537, 1497, 2504, 2969 |
| HpyCH4IV | ACGT | 2 cut(s) | 1204, 1519 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 437, 446, 1358, 1507, 1849, 2250, 3160 |
| HpySE526I | ACGT | 2 cut(s) | 1204, 1519 |
| Ksp22I | TGATCA | 2 cut(s) | 136, 2227 |
| LguI | GCTCTTC | 2 cut(s) | 1098, 1178 |
| LmnI | GCTCC | 3 cut(s) | 1990, 2954, 3160 |
| Lsp1109I | GCAGC | 6 cut(s) | 1848, 2256, 2360, 2750, 3018, 3021 |
| LweI | GCATC | 6 cut(s) | 36, 1178, 1437, 2096, 2340, 2416 |
| MabI | ACCWGGT | 1 cut(s) | 2572 |
| MaeII | ACGT | 2 cut(s) | 1204, 1519 |
| MaeIII | GTNAC | 7 cut(s) | 502, 964, 1752, 2825, 2866, 2912, 2963 |
| MflI | RGATCY | 6 cut(s) | 408, 928, 1053, 1409, 2583, 2618 |
| MhlI | GDGCHC | 5 cut(s) | 177, 219, 876, 1512, 2488 |
| MlyI | GAGTC | 5 cut(s) | 210, 1682, 1972, 2094, 3207 |
| MmeI | TCCRAC | 4 cut(s) | 935, 1160, 1353, 2188 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1545 |
| MseI | TTAA | 9 cut(s) | 339, 465, 711, 744, 1256, 1529, 2670, 2732, 3171 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1895, 3057 |
| MspA1I | CMGCKG | 1 cut(s) | 243 |
| MspI | CCGG | 2 cut(s) | 1512, 1805 |
| MspR9I | CCNGG | 7 cut(s) | 605, 1512, 1513, 1805, 2417, 2574, 2643 |
| Mva1269I | GAATGC | 2 cut(s) | 1070, 1659 |
| MvaI | CCWGG | 4 cut(s) | 605, 2417, 2574, 2643 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 437, 446, 1358, 1507, 1849, 2250, 3160 |
| NciI | CCSGG | 3 cut(s) | 1512, 1513, 1805 |
| NdeI | CATATG | 1 cut(s) | 2564 |
| NheI | GCTAGC | 1 cut(s) | 1357 |
| NlaIV | GGNNCC | 1 cut(s) | 642 |
| NmuCI | GTSAC | 4 cut(s) | 2825, 2866, 2912, 2963 |
| NspI | RCATGY | 4 cut(s) | 437, 1317, 1442, 2270 |
| NspV | TTCGAA | 1 cut(s) | 1937 |
| PaeI | GCATGC | 1 cut(s) | 1317 |
| PaeR7I | CTCGAG | 1 cut(s) | 1952 |
| PagI | TCATGA | 3 cut(s) | 1489, 2943, 3203 |
| PceI | AGGCCT | 1 cut(s) | 1152 |
| PciI | ACATGT | 1 cut(s) | 433 |
| PciSI | GCTCTTC | 2 cut(s) | 1098, 1178 |
| PctI | GAATGC | 2 cut(s) | 1070, 1659 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1545 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2207, 2860 |
| PfoI | TCCNGGA | 1 cut(s) | 2415 |
| PkrI | GCNGC | 7 cut(s) | 1136, 1838, 2246, 2375, 2765, 3008, 3011 |
| Ple19I | CGATCG | 2 cut(s) | 165, 210 |
| PleI | GAGTC | 5 cut(s) | 209, 1682, 1971, 2094, 3206 |
| PpsI | GAGTC | 5 cut(s) | 209, 1682, 1971, 2094, 3206 |
| PpuMI | RGGWCCY | 2 cut(s) | 641, 2419 |
| PscI | ACATGT | 1 cut(s) | 433 |
| Psp124BI | GAGCTC | 1 cut(s) | 177 |
| Psp5II | RGGWCCY | 2 cut(s) | 641, 2419 |
| Psp6I | CCWGG | 4 cut(s) | 603, 2415, 2572, 2641 |
| PspFI | CCCAGC | 1 cut(s) | 449 |
| PspGI | CCWGG | 4 cut(s) | 603, 2415, 2572, 2641 |
| PspN4I | GGNNCC | 1 cut(s) | 642 |
| PspPI | GGNCC | 4 cut(s) | 62, 167, 641, 2419 |
| PspPPI | RGGWCCY | 2 cut(s) | 641, 2419 |
| PstI | CTGCAG | 2 cut(s) | 649, 2378 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1577 |
| PsuI | RGATCY | 6 cut(s) | 408, 928, 1053, 1409, 2583, 2618 |
| PvuI | CGATCG | 2 cut(s) | 165, 210 |
| PvuII | CAGCTG | 1 cut(s) | 243 |
| RsaI | GTAC | 8 cut(s) | 230, 1557, 1576, 1708, 2271, 2555, 2647, 2937 |
| RsaNI | GTAC | 8 cut(s) | 229, 1556, 1575, 1707, 2270, 2554, 2646, 2936 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1895, 3057 |
| SacI | GAGCTC | 1 cut(s) | 177 |
| SapI | GCTCTTC | 2 cut(s) | 1098, 1178 |
| SaqAI | TTAA | 9 cut(s) | 339, 465, 711, 744, 1256, 1529, 2670, 2732, 3171 |
| SatI | GCNGC | 7 cut(s) | 1135, 1837, 2245, 2374, 2764, 3007, 3010 |
| Sau96I | GGNCC | 4 cut(s) | 62, 167, 641, 2419 |
| SbfI | CCTGCAGG | 1 cut(s) | 649 |
| SchI | GAGTC | 5 cut(s) | 210, 1682, 1972, 2094, 3207 |
| ScrFI | CCNGG | 7 cut(s) | 605, 1512, 1513, 1805, 2417, 2574, 2643 |
| SdaI | CCTGCAGG | 1 cut(s) | 649 |
| SduI | GDGCHC | 5 cut(s) | 177, 219, 876, 1512, 2488 |
| SexAI | ACCWGGT | 1 cut(s) | 2572 |
| SfaNI | GCATC | 6 cut(s) | 36, 1178, 1437, 2096, 2340, 2416 |
| SfcI | CTRYAG | 4 cut(s) | 645, 1681, 1909, 2374 |
| Sfr274I | CTCGAG | 1 cut(s) | 1952 |
| SfuI | TTCGAA | 1 cut(s) | 1937 |
| SinI | GGWCC | 4 cut(s) | 62, 167, 641, 2419 |
| SlaI | CTCGAG | 1 cut(s) | 1952 |
| SmaI | CCCGGG | 1 cut(s) | 1513 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1895, 3057 |
| SphI | GCATGC | 1 cut(s) | 1317 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 649 |
| SseBI | AGGCCT | 1 cut(s) | 1152 |
| SsiI | CCGC | 1 cut(s) | 1134 |
| SspI | AATATT | 2 cut(s) | 985, 1243 |
| SstI | GAGCTC | 1 cut(s) | 177 |
| StuI | AGGCCT | 1 cut(s) | 1152 |
| StyD4I | CCNGG | 7 cut(s) | 603, 1510, 1511, 1803, 2415, 2572, 2641 |
| StyI | CCWWGG | 1 cut(s) | 2839 |
| TaaI | ACNGT | 7 cut(s) | 62, 101, 310, 537, 1497, 2504, 2969 |
| TaiI | ACGT | 2 cut(s) | 1207, 1522 |
| TaqII | GACCGA | 1 cut(s) | 2787 |
| TatI | WGTACW | 3 cut(s) | 1555, 2553, 2935 |
| TauI | GCSGC | 1 cut(s) | 1137 |
| Tru1I | TTAA | 9 cut(s) | 339, 465, 711, 744, 1256, 1529, 2670, 2732, 3171 |
| Tru9I | TTAA | 9 cut(s) | 339, 465, 711, 744, 1256, 1529, 2670, 2732, 3171 |
| TscAI | CASTG | 3 cut(s) | 106, 1502, 2556 |
| TseFI | GTSAC | 4 cut(s) | 2825, 2866, 2912, 2963 |
| TseI | GCWGC | 6 cut(s) | 1836, 2244, 2373, 2763, 3006, 3009 |
| Tsp45I | GTSAC | 4 cut(s) | 2825, 2866, 2912, 2963 |
| TspGWI | ACGGA | 5 cut(s) | 62, 318, 696, 1298, 1495 |
| TspMI | CCCGGG | 1 cut(s) | 1511 |
| TspRI | CASTG | 3 cut(s) | 106, 1502, 2556 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2207, 2860 |
| VpaK11BI | GGWCC | 4 cut(s) | 62, 167, 641, 2419 |
| XapI | RAATTY | 3 cut(s) | 633, 1821, 3187 |
| XbaI | TCTAGA | 1 cut(s) | 2350 |
| XceI | RCATGY | 4 cut(s) | 437, 1317, 1442, 2270 |
| XhoI | CTCGAG | 1 cut(s) | 1952 |
| XmaI | CCCGGG | 1 cut(s) | 1511 |
| XmiI | GTMKAC | 1 cut(s) | 1477 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1545 |