TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 190 | 1.3e-58 | TIR domain |
| TIR_2 | PF13676 | 16 - 108 | 2.4e-08 | TIR domain |
| NB-ARC | PF00931 | 191 - 363 | 5.6e-15 | NB-ARC domain |
| ATPase_2 | PF01637 | 192 - 307 | 3.2e-07 | ATPase domain predominantly from Archaea |
| WHD_ROQ1 | PF23282 | 430 - 503 | 2.5e-11 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 607 - 626 | 6.9e-08 | Leucine Rich Repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2180 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1382 |
| AatII | GACGTC | 1 cut(s) | 75 |
| Acc16I | TGCGCA | 1 cut(s) | 1296 |
| Acc65I | GGTACC | 1 cut(s) | 1580 |
| AccB1I | GGYRCC | 1 cut(s) | 1580 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1100 |
| AccBSI | CCGCTC | 1 cut(s) | 1882 |
| AccI | GTMKAC | 1 cut(s) | 2112 |
| AccII | CGCG | 1 cut(s) | 53 |
| AciI | CCGC | 5 cut(s) | 115, 343, 1880, 2241, 2785 |
| AclWI | GGATC | 7 cut(s) | 131, 212, 323, 374, 1947, 2961, 2974 |
| AcoI | YGGCCR | 1 cut(s) | 2931 |
| AcsI | RAATTY | 6 cut(s) | 359, 1921, 2251, 2325, 2849, 2876 |
| AcuI | CTGAAG | 2 cut(s) | 1658, 2479 |
| AcyI | GRCGYC | 2 cut(s) | 72, 2737 |
| AfaI | GTAC | 5 cut(s) | 1260, 1582, 1728, 1781, 1859 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 342, 1100 |
| AflII | CTTAAG | 2 cut(s) | 466, 2222 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2640 |
| AhlI | ACTAGT | 1 cut(s) | 178 |
| AjiI | CACGTC | 1 cut(s) | 1097 |
| AjnI | CCWGG | 4 cut(s) | 952, 1220, 2215, 2581 |
| AleI | CACNNNNGTG | 1 cut(s) | 2731 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2855, 2887 |
| Alw21I | GWGCWC | 4 cut(s) | 391, 882, 1572, 2409 |
| Alw26I | GTCTC | 4 cut(s) | 30, 1757, 2450, 3015 |
| Alw44I | GTGCAC | 1 cut(s) | 387 |
| AlwI | GGATC | 7 cut(s) | 131, 212, 323, 374, 1947, 2961, 2974 |
| Ama87I | CYCGRG | 2 cut(s) | 1545, 1853 |
| AoxI | GGCC | 3 cut(s) | 65, 170, 2931 |
| ApaLI | GTGCAC | 1 cut(s) | 387 |
| ApeKI | GCWGC | 5 cut(s) | 778, 997, 2244, 2379, 2883 |
| ApoI | RAATTY | 6 cut(s) | 359, 1921, 2251, 2325, 2849, 2876 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2963, 2981, 2995, 3013 |
| AseI | ATTAAT | 1 cut(s) | 2825 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 795, 1233, 2100, 2325 |
| Asp718I | GGTACC | 1 cut(s) | 1580 |
| AspLEI | GCGC | 2 cut(s) | 161, 1297 |
| AspS9I | GGNCC | 5 cut(s) | 65, 170, 644, 950, 2521 |
| AsuC2I | CCSGG | 3 cut(s) | 1546, 1547, 1937 |
| AsuHPI | GGTGA | 1 cut(s) | 1355 |
| AsuII | TTCGAA | 1 cut(s) | 2874 |
| AvaI | CYCGRG | 2 cut(s) | 1545, 1853 |
| AvaII | GGWCC | 3 cut(s) | 644, 950, 2521 |
| AxyI | CCTNAGG | 3 cut(s) | 734, 1731, 1757 |
| BaeGI | GKGCMC | 1 cut(s) | 391 |
| BamHI | GGATCC | 1 cut(s) | 2966 |
| BanI | GGYRCC | 1 cut(s) | 1580 |
| BanII | GRGCYC | 1 cut(s) | 2409 |
| BauI | CACGAG | 1 cut(s) | 2281 |
| BbsI | GAAGAC | 8 cut(s) | 40, 465, 1203, 1260, 1787, 2392, 2791, 2991 |
| Bbv12I | GWGCWC | 4 cut(s) | 391, 882, 1572, 2409 |
| BbvI | GCAGC | 5 cut(s) | 765, 1009, 2256, 2366, 2895 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 485, 519, 2371, 2405, 2998, 3032 |
| BciT130I | CCWGG | 4 cut(s) | 954, 1222, 2217, 2583 |
| BciVI | GTATCC | 1 cut(s) | 1444 |
| BclI | TGATCA | 2 cut(s) | 139, 1240 |
| BcnI | CCSGG | 3 cut(s) | 1546, 1547, 1937 |
| BcoDI | GTCTC | 4 cut(s) | 30, 1757, 2450, 3015 |
| BcuI | ACTAGT | 1 cut(s) | 178 |
| BfaI | CTAG | 8 cut(s) | 179, 543, 602, 1845, 2033, 2066, 2429, 2846 |
| BfmI | CTRYAG | 3 cut(s) | 104, 2380, 2598 |
| BfrI | CTTAAG | 2 cut(s) | 466, 2222 |
| BfuI | GTATCC | 1 cut(s) | 1444 |
| BglII | AGATCT | 3 cut(s) | 270, 1059, 1415 |
| BisI | GCNGC | 7 cut(s) | 779, 998, 1880, 2242, 2245, 2380, 2884 |
| BlsI | GCNGC | 7 cut(s) | 780, 999, 1881, 2243, 2246, 2381, 2885 |
| Bme1390I | CCNGG | 7 cut(s) | 954, 1222, 1546, 1547, 1937, 2217, 2583 |
| Bme18I | GGWCC | 3 cut(s) | 644, 950, 2521 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2640 |
| BmeT110I | CYCGRG | 2 cut(s) | 1545, 1853 |
| BmgBI | CACGTC | 1 cut(s) | 1097 |
| BmgT120I | GGNCC | 5 cut(s) | 65, 170, 644, 950, 2521 |
| BmiI | GGNNCC | 3 cut(s) | 1582, 2783, 2968 |
| BmrFI | CCNGG | 7 cut(s) | 954, 1222, 1546, 1547, 1937, 2217, 2583 |
| BmsI | GCATC | 8 cut(s) | 1039, 1455, 1531, 2029, 2114, 2402, 2751, 2952 |
| BpiI | GAAGAC | 8 cut(s) | 40, 465, 1203, 1260, 1787, 2392, 2791, 2991 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1783, 1815 |
| BpmI | CTGGAG | 3 cut(s) | 474, 1982, 2474 |
| Bpu14I | TTCGAA | 1 cut(s) | 2874 |
| BpuEI | CTTGAG | 6 cut(s) | 1040, 1586, 1868, 1877, 2113, 2736 |
| BpuMI | CCSGG | 3 cut(s) | 1546, 1547, 1937 |
| BsaAI | YACGTR | 2 cut(s) | 392, 2375 |
| BsaBI | GATNNNNATC | 3 cut(s) | 209, 311, 1344 |
| BsaHI | GRCGYC | 2 cut(s) | 72, 2737 |
| BsaJI | CCNNGG | 5 cut(s) | 61, 399, 1517, 1545, 2215 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1293, 1323, 1955, 1985, 2447, 2477, 2704, 2734 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 342, 1100 |
| Bse118I | RCCGGY | 1 cut(s) | 1583 |
| Bse1I | ACTGG | 2 cut(s) | 2147, 2457 |
| Bse21I | CCTNAGG | 3 cut(s) | 734, 1731, 1757 |
| Bse3DI | GCAATG | 2 cut(s) | 1314, 1450 |
| Bse8I | GATNNNNATC | 3 cut(s) | 209, 311, 1344 |
| BseBI | CCWGG | 4 cut(s) | 954, 1222, 2217, 2583 |
| BseDI | CCNNGG | 5 cut(s) | 61, 399, 1517, 1545, 2215 |
| BseGI | GGATG | 4 cut(s) | 262, 332, 1387, 2129 |
| BseJI | GATNNNNATC | 3 cut(s) | 209, 311, 1344 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 342, 1100 |
| BseMI | GCAATG | 2 cut(s) | 1314, 1450 |
| BseMII | CTCAG | 5 cut(s) | 41, 103, 1359, 1722, 1889 |
| BseNI | ACTGG | 2 cut(s) | 2147, 2457 |
| BseRI | GAGGAG | 2 cut(s) | 416, 1748 |
| BseSI | GKGCMC | 1 cut(s) | 391 |
| BseXI | GCAGC | 5 cut(s) | 765, 1009, 2256, 2366, 2895 |
| BseYI | CCCAGC | 2 cut(s) | 650, 3005 |
| Bsh1236I | CGCG | 1 cut(s) | 53 |
| Bsh1285I | CGRYCG | 2 cut(s) | 168, 213 |
| BshFI | GGCC | 3 cut(s) | 67, 172, 2933 |
| BshNI | GGYRCC | 1 cut(s) | 1580 |
| BsiEI | CGRYCG | 2 cut(s) | 168, 213 |
| BsiHKAI | GWGCWC | 4 cut(s) | 391, 882, 1572, 2409 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1545, 1853 |
| BsiSI | CCGG | 3 cut(s) | 1546, 1584, 1937 |
| BslFI | GGGAC | 2 cut(s) | 309, 488 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 342, 1100 |
| BsmAI | GTCTC | 4 cut(s) | 30, 1757, 2450, 3015 |
| BsmBI | CGTCTC | 3 cut(s) | 30, 2450, 3015 |
| BsmFI | GGGAC | 2 cut(s) | 309, 488 |
| BsmI | GAATGC | 5 cut(s) | 535, 1297, 1668, 1725, 1840 |
| BsnI | GGCC | 3 cut(s) | 67, 172, 2933 |
| BsoBI | CYCGRG | 2 cut(s) | 1545, 1853 |
| Bsp119I | TTCGAA | 1 cut(s) | 2874 |
| Bsp1286I | GDGCHC | 4 cut(s) | 391, 882, 1572, 2409 |
| Bsp68I | TCGCGA | 1 cut(s) | 53 |
| BspACI | CCGC | 5 cut(s) | 115, 343, 1880, 2241, 2785 |
| BspANI | GGCC | 3 cut(s) | 67, 172, 2933 |
| BspCNI | CTCAG | 5 cut(s) | 40, 102, 1360, 1723, 1888 |
| BspFNI | CGCG | 1 cut(s) | 53 |
| BspLI | GGNNCC | 3 cut(s) | 1582, 2783, 2968 |
| BspMAI | CTGCAG | 2 cut(s) | 2384, 2602 |
| BspPI | GGATC | 7 cut(s) | 131, 212, 323, 374, 1947, 2961, 2974 |
| BspQI | GCTCTTC | 2 cut(s) | 1104, 2530 |
| BspT104I | TTCGAA | 1 cut(s) | 2874 |
| BspT107I | GGYRCC | 1 cut(s) | 1580 |
| BspTI | CTTAAG | 2 cut(s) | 466, 2222 |
| BsrBI | CCGCTC | 1 cut(s) | 1882 |
| BsrDI | GCAATG | 2 cut(s) | 1314, 1450 |
| BsrFI | RCCGGY | 1 cut(s) | 1583 |
| BsrI | ACTGG | 2 cut(s) | 2147, 2457 |
| BssAI | RCCGGY | 1 cut(s) | 1583 |
| BssECI | CCNNGG | 5 cut(s) | 61, 399, 1517, 1545, 2215 |
| BssNI | GRCGYC | 2 cut(s) | 72, 2737 |
| BssSI | CACGAG | 1 cut(s) | 2281 |
| BssT1I | CCWWGG | 1 cut(s) | 1517 |
| Bst2BI | CACGAG | 1 cut(s) | 2281 |
| Bst2UI | CCWGG | 4 cut(s) | 954, 1222, 2217, 2583 |
| Bst4CI | ACNGT | 8 cut(s) | 108, 795, 1914, 2050, 2110, 2444, 2461, 2651 |
| Bst6I | CTCTTC | 5 cut(s) | 1104, 2106, 2352, 2530, 2581 |
| BstACI | GRCGYC | 2 cut(s) | 72, 2737 |
| BstAFI | CTTAAG | 2 cut(s) | 466, 2222 |
| BstBAI | YACGTR | 2 cut(s) | 392, 2375 |
| BstBI | TTCGAA | 1 cut(s) | 2874 |
| BstC8I | GCNNGC | 6 cut(s) | 55, 1572, 1850, 2204, 2491, 2598 |
| BstDSI | CCRYGG | 1 cut(s) | 61 |
| BstEII | GGTNACC | 1 cut(s) | 2651 |
| BstF5I | GGATG | 4 cut(s) | 262, 332, 1387, 2129 |
| BstFNI | CGCG | 1 cut(s) | 53 |
| BstHHI | GCGC | 2 cut(s) | 161, 1297 |
| BstMAI | GTCTC | 4 cut(s) | 30, 1757, 2450, 3015 |
| BstMCI | CGRYCG | 2 cut(s) | 168, 213 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 647, 997, 2537 |
| BstNI | CCWGG | 4 cut(s) | 954, 1222, 2217, 2583 |
| BstNSI | RCATGY | 1 cut(s) | 1727 |
| BstPI | GGTNACC | 1 cut(s) | 2651 |
| BstSCI | CCNGG | 7 cut(s) | 952, 1220, 1544, 1545, 1935, 2215, 2581 |
| BstSFI | CTRYAG | 3 cut(s) | 104, 2380, 2598 |
| BstSLI | GKGCMC | 1 cut(s) | 391 |
| BstUI | CGCG | 1 cut(s) | 53 |
| BstV1I | GCAGC | 5 cut(s) | 765, 1009, 2256, 2366, 2895 |
| BstV2I | GAAGAC | 8 cut(s) | 40, 465, 1203, 1260, 1787, 2392, 2791, 2991 |
| BstX2I | RGATCY | 7 cut(s) | 204, 270, 328, 1059, 1415, 1939, 2966 |
| BstYI | RGATCY | 7 cut(s) | 204, 270, 328, 1059, 1415, 1939, 2966 |
| Bsu36I | CCTNAGG | 3 cut(s) | 734, 1731, 1757 |
| BsuI | GTATCC | 1 cut(s) | 1444 |
| BsuRI | GGCC | 3 cut(s) | 67, 172, 2933 |
| BtgI | CCRYGG | 1 cut(s) | 61 |
| BtrI | CACGTC | 1 cut(s) | 1097 |
| BtsCI | GGATG | 4 cut(s) | 262, 332, 1387, 2129 |
| BtsI | GCAGTG | 1 cut(s) | 2607 |
| BtsIMutI | CAGTG | 4 cut(s) | 1633, 2154, 2450, 2607 |
| BtuMI | TCGCGA | 1 cut(s) | 53 |
| Cac8I | GCNNGC | 6 cut(s) | 55, 1572, 1850, 2204, 2491, 2598 |
| CfoI | GCGC | 2 cut(s) | 161, 1297 |
| Cfr10I | RCCGGY | 1 cut(s) | 1583 |
| Cfr13I | GGNCC | 5 cut(s) | 65, 170, 644, 950, 2521 |
| Cfr9I | CCCGGG | 1 cut(s) | 1545 |
| CseI | GACGC | 1 cut(s) | 2726 |
| Csp6I | GTAC | 5 cut(s) | 1259, 1581, 1727, 1780, 1858 |
| CviQI | GTAC | 5 cut(s) | 1259, 1581, 1727, 1780, 1858 |
| DraI | TTTAAA | 3 cut(s) | 1081, 1657, 2484 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1382 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2640 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1382 |
| EaeI | YGGCCR | 1 cut(s) | 2931 |
| Eam1104I | CTCTTC | 5 cut(s) | 1104, 2106, 2352, 2530, 2581 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2640 |
| EarI | CTCTTC | 5 cut(s) | 1104, 2106, 2352, 2530, 2581 |
| Ecl136II | GAGCTC | 1 cut(s) | 2407 |
| Eco130I | CCWWGG | 1 cut(s) | 1517 |
| Eco24I | GRGCYC | 1 cut(s) | 2409 |
| Eco32I | GATATC | 1 cut(s) | 1249 |
| Eco47I | GGWCC | 3 cut(s) | 644, 950, 2521 |
| Eco53kI | GAGCTC | 1 cut(s) | 2407 |
| Eco57I | CTGAAG | 2 cut(s) | 1658, 2479 |
| Eco81I | CCTNAGG | 3 cut(s) | 734, 1731, 1757 |
| Eco88I | CYCGRG | 2 cut(s) | 1545, 1853 |
| Eco91I | GGTNACC | 1 cut(s) | 2651 |
| EcoICRI | GAGCTC | 1 cut(s) | 2407 |
| EcoO65I | GGTNACC | 1 cut(s) | 2651 |
| EcoRI | GAATTC | 3 cut(s) | 2325, 2849, 2876 |
| EcoRII | CCWGG | 4 cut(s) | 952, 1220, 2215, 2581 |
| EcoRV | GATATC | 1 cut(s) | 1249 |
| EcoT14I | CCWWGG | 1 cut(s) | 1517 |
| EcoT22I | ATGCAT | 2 cut(s) | 1725, 1842 |
| EcoT38I | GRGCYC | 1 cut(s) | 2409 |
| ErhI | CCWWGG | 1 cut(s) | 1517 |
| Esp3I | CGTCTC | 3 cut(s) | 30, 2450, 3015 |
| FaqI | GGGAC | 2 cut(s) | 309, 488 |
| FbaI | TGATCA | 2 cut(s) | 139, 1240 |
| FblI | GTMKAC | 1 cut(s) | 2112 |
| Fnu4HI | GCNGC | 7 cut(s) | 779, 998, 1880, 2242, 2245, 2380, 2884 |
| FokI | GGATG | 4 cut(s) | 269, 319, 1394, 2136 |
| FriOI | GRGCYC | 1 cut(s) | 2409 |
| Fsp4HI | GCNGC | 7 cut(s) | 779, 998, 1880, 2242, 2245, 2380, 2884 |
| FspBI | CTAG | 8 cut(s) | 179, 543, 602, 1845, 2033, 2066, 2429, 2846 |
| FspI | TGCGCA | 1 cut(s) | 1296 |
| GlaI | GCGC | 2 cut(s) | 160, 1296 |
| GluI | GCNGC | 7 cut(s) | 779, 998, 1880, 2242, 2245, 2380, 2884 |
| GsaI | CCCAGC | 2 cut(s) | 654, 3009 |
| GsuI | CTGGAG | 3 cut(s) | 474, 1982, 2474 |
| HaeIII | GGCC | 3 cut(s) | 67, 172, 2933 |
| HapII | CCGG | 3 cut(s) | 1546, 1584, 1937 |
| HgaI | GACGC | 1 cut(s) | 2726 |
| HhaI | GCGC | 2 cut(s) | 161, 1297 |
| Hin1I | GRCGYC | 2 cut(s) | 72, 2737 |
| Hin6I | GCGC | 2 cut(s) | 159, 1295 |
| HinP1I | GCGC | 2 cut(s) | 159, 1295 |
| HincII | GTYRAC | 1 cut(s) | 2157 |
| HindII | GTYRAC | 1 cut(s) | 2157 |
| HindIII | AAGCTT | 5 cut(s) | 426, 1133, 1145, 1650, 2491 |
| HpaII | CCGG | 3 cut(s) | 1546, 1584, 1937 |
| HphI | GGTGA | 1 cut(s) | 1355 |
| Hpy166II | GTNNAC | 7 cut(s) | 389, 692, 727, 901, 1690, 2113, 2157 |
| Hpy188I | TCNGA | 8 cut(s) | 30, 337, 1042, 1120, 1977, 2168, 2971, 3020 |
| Hpy8I | GTNNAC | 7 cut(s) | 389, 692, 727, 901, 1690, 2113, 2157 |
| Hpy99I | CGWCG | 3 cut(s) | 2050, 2742, 2993 |
| HpyAV | CCTTC | 6 cut(s) | 21, 183, 1186, 1768, 2192, 3025 |
| HpyCH4III | ACNGT | 8 cut(s) | 108, 795, 1914, 2050, 2110, 2444, 2461, 2651 |
| HpyCH4IV | ACGT | 6 cut(s) | 72, 391, 1096, 1257, 2374, 2991 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 647, 997, 2537 |
| HpySE526I | ACGT | 6 cut(s) | 72, 391, 1096, 1257, 2374, 2991 |
| Hsp92I | GRCGYC | 2 cut(s) | 72, 2737 |
| HspAI | GCGC | 2 cut(s) | 159, 1295 |
| KpnI | GGTACC | 1 cut(s) | 1584 |
| Ksp22I | TGATCA | 2 cut(s) | 139, 1240 |
| LguI | GCTCTTC | 2 cut(s) | 1104, 2530 |
| LmnI | GCTCC | 2 cut(s) | 420, 2412 |
| Lsp1109I | GCAGC | 5 cut(s) | 765, 1009, 2256, 2366, 2895 |
| LweI | GCATC | 8 cut(s) | 1039, 1455, 1531, 2029, 2114, 2402, 2751, 2952 |
| MaeI | CTAG | 8 cut(s) | 179, 543, 602, 1845, 2033, 2066, 2429, 2846 |
| MaeII | ACGT | 6 cut(s) | 72, 391, 1096, 1257, 2374, 2991 |
| MaeIII | GTNAC | 9 cut(s) | 92, 970, 1126, 1216, 1373, 1908, 2577, 2651, 2693 |
| MbiI | CCGCTC | 1 cut(s) | 1882 |
| MflI | RGATCY | 7 cut(s) | 204, 270, 328, 1059, 1415, 1939, 2966 |
| MhlI | GDGCHC | 4 cut(s) | 391, 882, 1572, 2409 |
| MlyI | GAGTC | 3 cut(s) | 1801, 2221, 2382 |
| MmeI | TCCRAC | 3 cut(s) | 897, 2572, 2994 |
| Mph1103I | ATGCAT | 2 cut(s) | 1725, 1842 |
| MroXI | GAANNNNTTC | 4 cut(s) | 795, 1233, 2100, 2325 |
| MslI | CAYNNNNRTG | 3 cut(s) | 843, 1427, 2731 |
| MspCI | CTTAAG | 2 cut(s) | 466, 2222 |
| MspI | CCGG | 3 cut(s) | 1546, 1584, 1937 |
| MspR9I | CCNGG | 7 cut(s) | 954, 1222, 1546, 1547, 1937, 2217, 2583 |
| Mva1269I | GAATGC | 5 cut(s) | 535, 1297, 1668, 1725, 1840 |
| MvaI | CCWGG | 4 cut(s) | 954, 1222, 2217, 2583 |
| MvnI | CGCG | 1 cut(s) | 53 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 647, 997, 2537 |
| NciI | CCSGG | 3 cut(s) | 1546, 1547, 1937 |
| NlaIV | GGNNCC | 3 cut(s) | 1582, 2783, 2968 |
| NmuCI | GTSAC | 4 cut(s) | 92, 1216, 1373, 1908 |
| NruI | TCGCGA | 1 cut(s) | 53 |
| NsbI | TGCGCA | 1 cut(s) | 1296 |
| NsiI | ATGCAT | 2 cut(s) | 1725, 1842 |
| NspI | RCATGY | 1 cut(s) | 1727 |
| NspV | TTCGAA | 1 cut(s) | 2874 |
| OliI | CACNNNNGTG | 1 cut(s) | 2731 |
| PaeR7I | CTCGAG | 1 cut(s) | 1853 |
| PciSI | GCTCTTC | 2 cut(s) | 1104, 2530 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 69 |
| PctI | GAATGC | 5 cut(s) | 535, 1297, 1668, 1725, 1840 |
| PdmI | GAANNNNTTC | 4 cut(s) | 795, 1233, 2100, 2325 |
| PfeI | GAWTC | 9 cut(s) | 197, 217, 1623, 1888, 2002, 2096, 2447, 2888, 2960 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1100 |
| PfoI | TCCNGGA | 2 cut(s) | 952, 1935 |
| PkrI | GCNGC | 7 cut(s) | 780, 999, 1881, 2243, 2246, 2381, 2885 |
| Ple19I | CGATCG | 2 cut(s) | 168, 213 |
| PleI | GAGTC | 3 cut(s) | 1800, 2221, 2382 |
| PpsI | GAGTC | 3 cut(s) | 1800, 2221, 2382 |
| Ppu21I | YACGTR | 2 cut(s) | 392, 2375 |
| PshBI | ATTAAT | 1 cut(s) | 2825 |
| PsiI | TTATAA | 1 cut(s) | 2180 |
| Psp124BI | GAGCTC | 1 cut(s) | 2409 |
| Psp6I | CCWGG | 4 cut(s) | 952, 1220, 2215, 2581 |
| PspEI | GGTNACC | 1 cut(s) | 2651 |
| PspFI | CCCAGC | 2 cut(s) | 650, 3005 |
| PspGI | CCWGG | 4 cut(s) | 952, 1220, 2215, 2581 |
| PspN4I | GGNNCC | 3 cut(s) | 1582, 2783, 2968 |
| PspPI | GGNCC | 5 cut(s) | 65, 170, 644, 950, 2521 |
| PspXI | VCTCGAGB | 1 cut(s) | 1853 |
| PstI | CTGCAG | 2 cut(s) | 2384, 2602 |
| PsuI | RGATCY | 7 cut(s) | 204, 270, 328, 1059, 1415, 1939, 2966 |
| PvuI | CGATCG | 2 cut(s) | 168, 213 |
| RruI | TCGCGA | 1 cut(s) | 53 |
| RsaI | GTAC | 5 cut(s) | 1260, 1582, 1728, 1781, 1859 |
| RsaNI | GTAC | 5 cut(s) | 1259, 1581, 1727, 1780, 1858 |
| RseI | CAYNNNNRTG | 3 cut(s) | 843, 1427, 2731 |
| SacI | GAGCTC | 1 cut(s) | 2409 |
| SapI | GCTCTTC | 2 cut(s) | 1104, 2530 |
| SatI | GCNGC | 7 cut(s) | 779, 998, 1880, 2242, 2245, 2380, 2884 |
| Sau96I | GGNCC | 5 cut(s) | 65, 170, 644, 950, 2521 |
| SchI | GAGTC | 3 cut(s) | 1801, 2221, 2382 |
| ScrFI | CCNGG | 7 cut(s) | 954, 1222, 1546, 1547, 1937, 2217, 2583 |
| SduI | GDGCHC | 4 cut(s) | 391, 882, 1572, 2409 |
| SfaNI | GCATC | 8 cut(s) | 1039, 1455, 1531, 2029, 2114, 2402, 2751, 2952 |
| SfcI | CTRYAG | 3 cut(s) | 104, 2380, 2598 |
| Sfr274I | CTCGAG | 1 cut(s) | 1853 |
| SfuI | TTCGAA | 1 cut(s) | 2874 |
| SinI | GGWCC | 3 cut(s) | 644, 950, 2521 |
| SlaI | CTCGAG | 1 cut(s) | 1853 |
| SmaI | CCCGGG | 1 cut(s) | 1547 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 843, 1427, 2731 |
| SmlI | CTYRAG | 9 cut(s) | 466, 1055, 1565, 1853, 1883, 1892, 2128, 2222, 2751 |
| SmoI | CTYRAG | 9 cut(s) | 466, 1055, 1565, 1853, 1883, 1892, 2128, 2222, 2751 |
| SpeI | ACTAGT | 1 cut(s) | 178 |
| SsiI | CCGC | 5 cut(s) | 115, 343, 1880, 2241, 2785 |
| SspI | AATATT | 3 cut(s) | 448, 2143, 2829 |
| SspMI | CTAG | 8 cut(s) | 179, 543, 602, 1845, 2033, 2066, 2429, 2846 |
| SstI | GAGCTC | 1 cut(s) | 2409 |
| StyD4I | CCNGG | 7 cut(s) | 952, 1220, 1544, 1545, 1935, 2215, 2581 |
| StyI | CCWWGG | 1 cut(s) | 1517 |
| TaaI | ACNGT | 8 cut(s) | 108, 795, 1914, 2050, 2110, 2444, 2461, 2651 |
| TaiI | ACGT | 6 cut(s) | 75, 394, 1099, 1260, 2377, 2994 |
| TaqII | GACCGA | 3 cut(s) | 413, 938, 2538 |
| TauI | GCSGC | 2 cut(s) | 1882, 2244 |
| TfiI | GAWTC | 9 cut(s) | 197, 217, 1623, 1888, 2002, 2096, 2447, 2888, 2960 |
| TscAI | CASTG | 4 cut(s) | 1633, 2154, 2457, 2607 |
| TseFI | GTSAC | 4 cut(s) | 92, 1216, 1373, 1908 |
| TseI | GCWGC | 5 cut(s) | 778, 997, 2244, 2379, 2883 |
| Tsp45I | GTSAC | 4 cut(s) | 92, 1216, 1373, 1908 |
| TspGWI | ACGGA | 5 cut(s) | 65, 336, 1140, 2828, 3048 |
| TspMI | CCCGGG | 1 cut(s) | 1545 |
| TspRI | CASTG | 4 cut(s) | 1633, 2154, 2457, 2607 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1100 |
| Vha464I | CTTAAG | 2 cut(s) | 466, 2222 |
| VneI | GTGCAC | 1 cut(s) | 387 |
| VpaK11BI | GGWCC | 3 cut(s) | 644, 950, 2521 |
| VspI | ATTAAT | 1 cut(s) | 2825 |
| XapI | RAATTY | 6 cut(s) | 359, 1921, 2251, 2325, 2849, 2876 |
| XbaI | TCTAGA | 2 cut(s) | 2065, 2845 |
| XceI | RCATGY | 1 cut(s) | 1727 |
| XhoI | CTCGAG | 1 cut(s) | 1853 |
| XmaI | CCCGGG | 1 cut(s) | 1545 |
| XmiI | GTMKAC | 1 cut(s) | 2112 |
| XmnI | GAANNNNTTC | 4 cut(s) | 795, 1233, 2100, 2325 |
| XspI | CTAG | 8 cut(s) | 179, 543, 602, 1845, 2033, 2066, 2429, 2846 |
| ZraI | GACGTC | 1 cut(s) | 73 |
| Zsp2I | ATGCAT | 2 cut(s) | 1725, 1842 |