Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006554

Physical Location & Seq

Genomic Coordinates Forward (+)

24225951 .. 24228970

Gene Structure 3020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAGCTCAAAGGAGAAGCCCACTCTCGGAGGTACGCGGATTAAGACCCGCAAAAGGAATATTGCTGCTCCTCTCGACCCTGCTGCTTTTTCTGATGCACTAGTTCAGATTTATCTGGATAATGCTGGTGATCTGGAACTTGTTGCCAGAAGTTTAGAGTCATCTGATCTTAATTTCTCAAGATACGGTGATATTTTCTTTGAGGTTGTTTTCATTGGAGGACGTACTCAAACTGGTTCAGTGAAATCTGATGAAGGGGAACGCCACCCTTACTCTATAATCGACTGTGAACCAAAGCGTGAAGCTATTTTACCATCAGTTGTATACATACAGAAAATTTTGCGGAGGAAAGCCTTCCTTATTAAGAACCTTGAGAATGTTACACGGAGATTCTTACAGTCACTGGAGCTTTTTGAGGAGAATGAGAGGAAGAAGCTTGCAATATTCACAGCACTTGCATTTTCACAGAAGCTCTCAGGATTACCTGCAGAGACTGTCTTCCAGCCATTGCTTAAGGATACTCTTGTTGCCAAAGGGATAGTTCTCAATTTTGTAACAGACTTCTTCAATGAATATTTGGTTGAGAACAGTCTTGATGACTTGATTTCTATTCTGAGGCGTGGCAAGATGGATGACAAACTCTTGGAGTTCCTGCCACCCACAAAGCGGACTACAGAAAGTTTTGCCGAGCATTTCACTAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAAATATTTGAGGTGAAGCTGAAGGAAATCAAAGCGGTCCTTACGAGCCAAGTGACAGAGGAAATAAACGTAGATGAAGTGACTGAAATGGTGAAGCAACAGGTGAAAGATGCAAAGCTGCCAGAGACTGAGGTTGTGCATGTGATCTGGGATGGGATAATGAATGCTGTTCAATGGTCTGGGAAAAACCAGCAGCAGAATTCGAATGCTGTATTACGCCAAGTGAAAACATGGGCACCCCTTCTGAACACGCTGTGTAGCACCGGGAACATGGAGATGGAACTGATGTATAAAGTACAGATGCAATGCTATGAGGATGCAAAGCTGATGAAAGTGTTTCCTGAGGTAGTGAGATCTCTGTATGAACTGGATGTGCTTGCGGAAGACACCATTCTGCACTGGTATCGCAAAGGGACCAACCCTAAGGGCAGGCAAACGTTTGTGAAGGGATTGGAACCGTTTGTGAATTGGCTCGAAGAGGCCGAAGAAGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

411

Amino Acids

47.06

Weight (kDa)

5.43

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_5MP1_2	PF25504	14 - 252	3.8e-82	5MP1/2 HEAT domain
W2	PF02020	338 - 411	4e-20	eIF4-gamma/eIF5/eIF2-epsilon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65220 AT5G36230 AT5G36230
fragaria_vesca	FvH4_1g28180 FvH4_6g00450 FvH4_6g00450 FvH4_6g00450
malus_domestica	MD00G1113300.v1.1 MD04G1245300.v1.1 MD12G1086500.v1.1 MD13G1060900.v1.1
prunus_persica	Prupe.6G361900_v2.0.a1
pyrus_communis	pycom04g21600 pycom06g10770 pycom12g23900
rosa_chinensis	RchiOBHm_Chr3g0447821
rosa_laevigata	RLG00000018976 RLG00000025968
rosa_multiflora	Rmu_co8456651.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426020
rosa_rugosa	Rorug02G0606000
rosa_samantha	Rh3AG005500 Rh3BG005100 Rh3CG005400 Rh3DG005600
rosa_wichuraiana	Rw3G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	973
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	37
AciI	CCGC	6 cut(s)	37, 49, 343, 667, 773, 1118
AclI	AACGTT	1 cut(s)	1175
AcsI	RAATTY	2 cut(s)	336, 937
AcuI	CTGAAG	1 cut(s)	779
AdeI	CACNNNGTG	1 cut(s)	993
AfaI	GTAC	4 cut(s)	34, 226, 728, 1035
AfiI	CCNNNNNNNGG	3 cut(s)	26, 54, 666
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	2 cut(s)	568, 911
AhlI	ACTAGT	1 cut(s)	100
AluBI	AGCT	9 cut(s)	6, 305, 409, 436, 472, 716, 757, 856, 1063
AluI	AGCT	9 cut(s)	6, 305, 409, 436, 472, 716, 757, 856, 1063
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	485, 857
AlwNI	CAGNNNCTG	3 cut(s)	403, 494, 866
AoxI	GGCC	1 cut(s)	1218
ApeKI	GCWGC	4 cut(s)	65, 83, 856, 931
ApoI	RAATTY	2 cut(s)	336, 937
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	775, 1152
AsuC2I	CCSGG	1 cut(s)	1003
AsuHPI	GGTGA	5 cut(s)	140, 200, 763, 841, 853
AsuII	TTCGAA	1 cut(s)	941
AvaII	GGWCC	2 cut(s)	775, 1152
AxyI	CCTNAGG	2 cut(s)	1080, 1161
BaeGI	GKGCMC	1 cut(s)	976
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BanI	GGYRCC	1 cut(s)	973
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BbsI	GAAGAC	2 cut(s)	490, 1128
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	52, 70, 843, 943
BccI	CCATC	4 cut(s)	322, 622, 884, 1009
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 1124, 1158
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	1003
BcoDI	GTCTC	2 cut(s)	485, 857
BcuI	ACTAGT	1 cut(s)	100
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	486, 672
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	493
BfuI	GTATCC	1 cut(s)	511
BglII	AGATCT	1 cut(s)	1091
BisI	GCNGC	4 cut(s)	66, 84, 857, 932
BlsI	GCNGC	4 cut(s)	67, 85, 858, 933
Bme1390I	CCNGG	1 cut(s)	1003
Bme18I	GGWCC	2 cut(s)	775, 1152
BmgT120I	GGNCC	2 cut(s)	775, 1152
BmiI	GGNNCC	3 cut(s)	975, 1153, 1194
BmrFI	CCNGG	1 cut(s)	1003
BmsI	GCATC	4 cut(s)	85, 838, 1029, 1045
BpiI	GAAGAC	2 cut(s)	490, 1128
BpmI	CTGGAG	1 cut(s)	425
Bpu14I	TTCGAA	1 cut(s)	941
BpuEI	CTTGAG	2 cut(s)	163, 392
BpuMI	CCSGG	1 cut(s)	1003
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 54, 666
Bse1I	ACTGG	4 cut(s)	238, 408, 1110, 1142
Bse21I	CCTNAGG	2 cut(s)	1080, 1161
Bse3DI	GCAATG	2 cut(s)	506, 1049
BseGI	GGATG	4 cut(s)	637, 895, 1060, 1114
BseLI	CCNNNNNNNGG	3 cut(s)	26, 54, 666
BseMI	GCAATG	2 cut(s)	506, 1049
BseMII	CTCAG	4 cut(s)	489, 605, 858, 1071
BseNI	ACTGG	4 cut(s)	238, 408, 1110, 1142
BseRI	GAGGAG	2 cut(s)	60, 431
BseSI	GKGCMC	1 cut(s)	976
BseXI	GCAGC	4 cut(s)	52, 70, 843, 943
BsgI	GTGCAG	1 cut(s)	1118
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	1220
BshNI	GGYRCC	1 cut(s)	973
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	1002
BslFI	GGGAC	1 cut(s)	1165
BslI	CCNNNNNNNGG	3 cut(s)	26, 54, 666
BsmAI	GTCTC	2 cut(s)	485, 857
BsmFI	GGGAC	1 cut(s)	1165
BsmI	GAATGC	2 cut(s)	907, 949
BsnI	GGCC	1 cut(s)	1220
Bsp119I	TTCGAA	1 cut(s)	941
Bsp1286I	GDGCHC	2 cut(s)	8, 976
Bsp143I	GATC	4 cut(s)	130, 166, 882, 1091
BspACI	CCGC	6 cut(s)	37, 49, 343, 667, 773, 1118
BspANI	GGCC	1 cut(s)	1220
BspCNI	CTCAG	4 cut(s)	488, 606, 859, 1072
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	975, 1153, 1194
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	493
BspT104I	TTCGAA	1 cut(s)	941
BspT107I	GGYRCC	1 cut(s)	973
BspTI	CTTAAG	1 cut(s)	512
BsrDI	GCAATG	2 cut(s)	506, 1049
BsrI	ACTGG	4 cut(s)	238, 408, 1110, 1142
BssMI	GATC	4 cut(s)	130, 166, 882, 1091
BssNAI	GTATAC	1 cut(s)	325
Bst1107I	GTATAC	1 cut(s)	325
Bst4CI	ACNGT	6 cut(s)	188, 287, 399, 496, 590, 1197
Bst6I	CTCTTC	2 cut(s)	1209, 1221
BstAFI	CTTAAG	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	941
BstC8I	GCNNGC	3 cut(s)	438, 1116, 1169
BstDEI	CTNAG	6 cut(s)	475, 614, 699, 867, 1080, 1161
BstF5I	GGATG	4 cut(s)	637, 895, 1060, 1114
BstFNI	CGCG	1 cut(s)	37
BstKTI	GATC	4 cut(s)	133, 169, 885, 1094
BstMAI	GTCTC	2 cut(s)	485, 857
BstMBI	GATC	4 cut(s)	130, 166, 882, 1091
BstNSI	RCATGY	1 cut(s)	881
BstSCI	CCNGG	1 cut(s)	1001
BstSFI	CTRYAG	2 cut(s)	486, 672
BstSLI	GKGCMC	1 cut(s)	976
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	4 cut(s)	52, 70, 843, 943
BstV2I	GAAGAC	2 cut(s)	490, 1128
BstX2I	RGATCY	1 cut(s)	1091
BstYI	RGATCY	1 cut(s)	1091
BstZ17I	GTATAC	1 cut(s)	325
Bsu36I	CCTNAGG	2 cut(s)	1080, 1161
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	1220
BtsCI	GGATG	4 cut(s)	637, 895, 1060, 1114
BtsIMutI	CAGTG	3 cut(s)	246, 401, 1135
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	3 cut(s)	438, 1116, 1169
CaiI	CAGNNNCTG	3 cut(s)	403, 494, 866
Cfr13I	GGNCC	2 cut(s)	775, 1152
Csp6I	GTAC	4 cut(s)	33, 225, 727, 1034
CviAII	CATG	3 cut(s)	878, 969, 1009
CviQI	GTAC	4 cut(s)	33, 225, 727, 1034
DdeI	CTNAG	6 cut(s)	475, 614, 699, 867, 1080, 1161
DpnI	GATC	4 cut(s)	132, 168, 884, 1093
DpnII	GATC	4 cut(s)	130, 166, 882, 1091
DraIII	CACNNNGTG	1 cut(s)	993
Eam1104I	CTCTTC	2 cut(s)	1209, 1221
EarI	CTCTTC	2 cut(s)	1209, 1221
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	775, 1152
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	779
Eco81I	CCTNAGG	2 cut(s)	1080, 1161
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	937
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	3 cut(s)	881, 972, 1012
FaiI	YATR	9 cut(s)	278, 325, 329, 879, 970, 1010, 1029, 1050, 1101
FalI	AAGNNNNNCTT	4 cut(s)	342, 374, 762, 794
FaqI	GGGAC	1 cut(s)	1165
FatI	CATG	3 cut(s)	877, 968, 1008
FauI	CCCGC	1 cut(s)	56
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	4 cut(s)	66, 84, 857, 932
FokI	GGATG	4 cut(s)	644, 902, 1067, 1121
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	66, 84, 857, 932
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	4 cut(s)	66, 84, 857, 932
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	1220
HapII	CCGG	1 cut(s)	1002
Hin1II	CATG	3 cut(s)	881, 972, 1012
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	158, 390
HpaII	CCGG	1 cut(s)	1002
HphI	GGTGA	5 cut(s)	140, 200, 763, 841, 853
Hpy166II	GTNNAC	2 cut(s)	290, 325
Hpy188I	TCNGA	7 cut(s)	29, 94, 108, 166, 250, 615, 984
Hpy188III	TCNNGA	7 cut(s)	74, 116, 134, 180, 477, 593, 1079
Hpy8I	GTNNAC	2 cut(s)	290, 325
HpyAV	CCTTC	5 cut(s)	248, 364, 754, 989, 1177
HpyCH4III	ACNGT	6 cut(s)	188, 287, 399, 496, 590, 1197
HpyCH4IV	ACGT	3 cut(s)	223, 807, 1175
HpyCH4V	TGCA	9 cut(s)	98, 440, 458, 488, 851, 877, 1042, 1058, 1135
HpyF3I	CTNAG	6 cut(s)	475, 614, 699, 867, 1080, 1161
HpySE526I	ACGT	3 cut(s)	223, 807, 1175
Hsp92II	CATG	3 cut(s)	881, 972, 1012
Kzo9I	GATC	4 cut(s)	130, 166, 882, 1091
LmnI	GCTCC	2 cut(s)	73, 406
Lsp1109I	GCAGC	4 cut(s)	52, 70, 843, 943
LweI	GCATC	4 cut(s)	85, 838, 1029, 1045
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	3 cut(s)	223, 807, 1175
MaeIII	GTNAC	5 cut(s)	379, 399, 553, 790, 817
MalI	GATC	4 cut(s)	132, 168, 884, 1093
MboI	GATC	4 cut(s)	130, 166, 882, 1091
MboII	GAAGA	6 cut(s)	442, 490, 556, 1133, 1226, 1235
MflI	RGATCY	1 cut(s)	1091
MhlI	GDGCHC	2 cut(s)	8, 976
MluCI	AATT	5 cut(s)	172, 336, 547, 937, 1204
MlyI	GAGTC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	4 cut(s)	42, 171, 363, 513
MslI	CAYNNNNRTG	1 cut(s)	1013
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	1 cut(s)	1002
MspR9I	CCNGG	1 cut(s)	1003
Mva1269I	GAATGC	2 cut(s)	907, 949
MvnI	CGCG	1 cut(s)	37
NciI	CCSGG	1 cut(s)	1003
NdeII	GATC	4 cut(s)	130, 166, 882, 1091
NlaIII	CATG	3 cut(s)	881, 972, 1012
NlaIV	GGNNCC	3 cut(s)	975, 1153, 1194
NmeAIII	GCCGAG	1 cut(s)	712
NmuCI	GTSAC	3 cut(s)	399, 790, 817
NspI	RCATGY	1 cut(s)	881
NspV	TTCGAA	1 cut(s)	941
PcsI	WCGNNNNNNNCGW	1 cut(s)	1218
PctI	GAATGC	2 cut(s)	907, 949
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	4 cut(s)	67, 85, 858, 933
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	1175
PspN4I	GGNNCC	3 cut(s)	975, 1153, 1194
PspPI	GGNCC	2 cut(s)	775, 1152
PstI	CTGCAG	1 cut(s)	490
PstNI	CAGNNNCTG	3 cut(s)	403, 494, 866
PsuI	RGATCY	1 cut(s)	1091
RsaI	GTAC	4 cut(s)	34, 226, 728, 1035
RsaNI	GTAC	4 cut(s)	33, 225, 727, 1034
RseI	CAYNNNNRTG	1 cut(s)	1013
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	4 cut(s)	42, 171, 363, 513
SatI	GCNGC	4 cut(s)	66, 84, 857, 932
Sau3AI	GATC	4 cut(s)	130, 166, 882, 1091
Sau96I	GGNCC	2 cut(s)	775, 1152
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	1003
SduI	GDGCHC	2 cut(s)	8, 976
SfaNI	GCATC	4 cut(s)	85, 838, 1029, 1045
SfcI	CTRYAG	2 cut(s)	486, 672
SfuI	TTCGAA	1 cut(s)	941
SinI	GGWCC	2 cut(s)	775, 1152
SmiMI	CAYNNNNRTG	1 cut(s)	1013
SmlI	CTYRAG	3 cut(s)	178, 371, 512
SmoI	CTYRAG	3 cut(s)	178, 371, 512
SpeI	ACTAGT	1 cut(s)	100
Sse9I	AATT	5 cut(s)	172, 336, 547, 937, 1204
SsiI	CCGC	6 cut(s)	37, 49, 343, 667, 773, 1118
SspI	AATATT	4 cut(s)	61, 444, 575, 744
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	1001
TaaI	ACNGT	6 cut(s)	188, 287, 399, 496, 590, 1197
TaiI	ACGT	3 cut(s)	226, 810, 1178
TaqI	TCGA	4 cut(s)	75, 282, 941, 1212
TasI	AATT	5 cut(s)	172, 336, 547, 937, 1204
TatI	WGTACW	2 cut(s)	726, 1033
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	4 cut(s)	42, 171, 363, 513
Tru9I	TTAA	4 cut(s)	42, 171, 363, 513
TscAI	CASTG	3 cut(s)	246, 408, 1142
TseFI	GTSAC	3 cut(s)	399, 790, 817
TseI	GCWGC	4 cut(s)	65, 83, 856, 931
Tsp45I	GTSAC	3 cut(s)	399, 790, 817
TspDTI	ATGAA	8 cut(s)	202, 267, 585, 747, 828, 914, 1082, 1116
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	3 cut(s)	246, 408, 1142
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	2 cut(s)	775, 1152
XapI	RAATTY	2 cut(s)	336, 937
XceI	RCATGY	1 cut(s)	881
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.