Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006554

Physical Location & Seq

Genomic Coordinates Forward (+)

4282876 .. 4285133

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1060900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGCGACGATTCCTTCAATCGTTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTGGCTATTTTCACAGCACTTGCATTCTCTCAGAAGCTGTCAGGACTTCCACCAGAAACGGTGTTCCAGCCAATGCTCAAGGATAATCTTGTTGGCAAAGGGCTAGTTCTATCGTTCATTACTGAGTTTTTCAAGGAGTATTTGATTGATAATAGTCTTGATGATTTGATTTCCATTCTGAAGCGGGGTAAAGTGGAGGACAATCTTTTGGAATTCTTCCCTTCCGCAAAGAGAACCGAAGAGAGTTTCTCTGAGCATTTCACTACAACGAGAAGAAAAATTTTCGAAGTGAAGCTTAAGGAAATGAAATCTGCTTTAACAACCCAGATAACAGAGGAAACCGATATGTCTGAAGTCATTGAGACTGTGAAGCAGCGTGTTAAAGACGCCAAATTGCCCGATGTTGAAGTTGTGCGAATTCTGTGGGATGTCATTATGGACGCTGTGCAGTGGTCTGGTAAGAACCAGCAGCAGAATGCTAATGCAGCTCTTCGCCAGGTGAAAACATGGGCAGAACTGCTGAACACCTTTTGCACGAATGGGAAGCTTGAGCTGGAACTGATGTACAAGGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTTTTCCCTGATATTGTAAAGTCCCTCTATGACGAGGATGTGCTTGCAGAAGACACCATTCTCCATTGGTTCCGCAAGGGAACAAACCCCAAGGGCAGGCAAACTTTTGTGAAGGCCCTGGAGCCATTGGTGAACTGGCTGGAGGAGGCAGAAGAGGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

276

Amino Acids

32.07

Weight (kDa)

5.11

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_5MP1_2	PF25504	1 - 107	1.4e-33	5MP1/2 HEAT domain
W2	PF02020	202 - 275	2.8e-20	eIF4-gamma/eIF5/eIF2-epsilon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65220 AT5G36230 AT5G36230
fragaria_vesca	FvH4_1g28180 FvH4_6g00450 FvH4_6g00450 FvH4_6g00450
malus_domestica	MD00G1113300.v1.1 MD04G1245300.v1.1 MD12G1086500.v1.1 MD13G1060900.v1.1
prunus_persica	Prupe.6G361900_v2.0.a1
pyrus_communis	pycom04g21600 pycom06g10770 pycom12g23900
rosa_chinensis	RchiOBHm_Chr3g0447821
rosa_laevigata	RLG00000018976 RLG00000025968
rosa_multiflora	Rmu_co8456651.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426020
rosa_rugosa	Rorug02G0606000
rosa_samantha	Rh3AG005500 Rh3BG005100 Rh3CG005400 Rh3DG005600
rosa_wichuraiana	Rw3G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	238, 279, 736
AcsI	RAATTY	3 cut(s)	266, 333, 471
AcuI	CTGAAG	2 cut(s)	254, 426
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	1 cut(s)	759
AflII	CTTAAG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	17, 187, 461
AjnI	CCWGG	2 cut(s)	549, 780
AluBI	AGCT	9 cut(s)	28, 55, 91, 349, 542, 601, 607, 655, 664
AluI	AGCT	9 cut(s)	28, 55, 91, 349, 542, 601, 607, 655, 664
Alw26I	GTCTC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	777
ApeKI	GCWGC	3 cut(s)	427, 523, 539
ApoI	RAATTY	3 cut(s)	266, 333, 471
Asp700I	GAANNNNTTC	1 cut(s)	665
AspS9I	GGNCC	1 cut(s)	778
AsuHPI	GGTGA	2 cut(s)	565, 805
AsuII	TTCGAA	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	720
BbvI	GCAGC	3 cut(s)	439, 535, 551
BciT130I	CCWGG	2 cut(s)	551, 782
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	158
BfrI	CTTAAG	1 cut(s)	350
BisI	GCNGC	3 cut(s)	428, 524, 540
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	3 cut(s)	429, 525, 541
Bme1390I	CCNGG	2 cut(s)	551, 782
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	2 cut(s)	734, 786
BmrFI	CCNGG	2 cut(s)	551, 782
BmsI	GCATC	2 cut(s)	621, 637
BpiI	GAAGAC	1 cut(s)	720
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	2 cut(s)	803, 824
Bpu1102I	GCTNAGC	1 cut(s)	651
Bpu14I	TTCGAA	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	116, 623
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	753, 780
Bsc4I	CCNNNNNNNGG	1 cut(s)	759
Bse1I	ACTGG	1 cut(s)	803
BseBI	CCWGG	2 cut(s)	551, 782
BseDI	CCNNGG	2 cut(s)	753, 780
BseGI	GGATG	3 cut(s)	487, 652, 706
BseLI	CCNNNNNNNGG	1 cut(s)	759
BseMII	CTCAG	3 cut(s)	98, 168, 297
BseNI	ACTGG	1 cut(s)	803
BseRI	GAGGAG	1 cut(s)	821
BseXI	GCAGC	3 cut(s)	439, 535, 551
BsgI	GTGCAG	1 cut(s)	521
BshFI	GGCC	1 cut(s)	779
BslFI	GGGAC	1 cut(s)	670
BslI	CCNNNNNNNGG	1 cut(s)	759
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	670
BsmI	GAATGC	2 cut(s)	77, 535
BsnI	GGCC	1 cut(s)	779
Bsp119I	TTCGAA	1 cut(s)	339
Bsp1407I	TGTACA	1 cut(s)	618
Bsp1720I	GCTNAGC	1 cut(s)	651
BspACI	CCGC	3 cut(s)	238, 279, 736
BspANI	GGCC	1 cut(s)	779
BspCNI	CTCAG	3 cut(s)	97, 169, 298
BspLI	GGNNCC	2 cut(s)	734, 786
BspQI	GCTCTTC	1 cut(s)	549
BspT104I	TTCGAA	1 cut(s)	339
BspTI	CTTAAG	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	618
BsrI	ACTGG	1 cut(s)	803
BssECI	CCNNGG	2 cut(s)	753, 780
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	2 cut(s)	551, 782
Bst4CI	ACNGT	2 cut(s)	115, 421
Bst6I	CTCTTC	3 cut(s)	288, 549, 810
BstACI	GRCGYC	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	618
BstBI	TTCGAA	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	57, 708, 761
BstDEI	CTNAG	4 cut(s)	84, 177, 306, 651
BstF5I	GGATG	3 cut(s)	487, 652, 706
BstMAI	GTCTC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 661
BstNI	CCWGG	2 cut(s)	551, 782
BstSCI	CCNGG	2 cut(s)	549, 780
BstV1I	GCAGC	3 cut(s)	439, 535, 551
BstV2I	GAAGAC	1 cut(s)	720
BsuRI	GGCC	1 cut(s)	779
BtsCI	GGATG	3 cut(s)	487, 652, 706
BtsI	GCAGTG	2 cut(s)	509, 641
BtsIMutI	CAGTG	2 cut(s)	509, 641
Cac8I	GCNNGC	3 cut(s)	57, 708, 761
CaiI	CAGNNNCTG	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	778
CseI	GACGC	2 cut(s)	449, 503
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	1 cut(s)	561
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	4 cut(s)	84, 177, 306, 651
Eam1104I	CTCTTC	3 cut(s)	288, 549, 810
EarI	CTCTTC	3 cut(s)	288, 549, 810
Eco130I	CCWWGG	1 cut(s)	753
Eco57I	CTGAAG	2 cut(s)	254, 426
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRI	GAATTC	2 cut(s)	266, 471
EcoRII	CCWGG	2 cut(s)	549, 780
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	1 cut(s)	564
FaiI	YATR	5 cut(s)	401, 491, 562, 642, 693
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	1 cut(s)	560
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	428, 524, 540
FokI	GGATG	3 cut(s)	494, 659, 713
Fsp4HI	GCNGC	3 cut(s)	428, 524, 540
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	3 cut(s)	428, 524, 540
GsuI	CTGGAG	2 cut(s)	803, 824
HaeIII	GGCC	1 cut(s)	779
HgaI	GACGC	2 cut(s)	449, 503
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	564
HindIII	AAGCTT	3 cut(s)	347, 599, 662
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	2 cut(s)	565, 805
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	5 cut(s)	87, 234, 307, 406, 630
Hpy188III	TCNNGA	2 cut(s)	96, 212
Hpy8I	GTNNAC	1 cut(s)	796
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	3 cut(s)	23, 285, 769
HpyCH4III	ACNGT	2 cut(s)	115, 421
HpyCH4V	TGCA	6 cut(s)	77, 502, 539, 588, 634, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 661
HpyF3I	CTNAG	4 cut(s)	84, 177, 306, 651
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	564
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	2 cut(s)	25, 784
Lsp1109I	GCAGC	3 cut(s)	439, 535, 551
LweI	GCATC	2 cut(s)	621, 637
MaeI	CTAG	1 cut(s)	158
MboII	GAAGA	7 cut(s)	61, 262, 305, 339, 536, 725, 827
MluCI	AATT	4 cut(s)	266, 333, 446, 471
MroXI	GAANNNNTTC	1 cut(s)	665
MseI	TTAA	3 cut(s)	351, 371, 435
MspCI	CTTAAG	1 cut(s)	350
MspR9I	CCNGG	2 cut(s)	551, 782
Mva1269I	GAATGC	2 cut(s)	77, 535
MvaI	CCWGG	2 cut(s)	551, 782
MwoI	GCNNNNNNNGC	2 cut(s)	539, 661
NlaIII	CATG	1 cut(s)	564
NlaIV	GGNNCC	2 cut(s)	734, 786
NspV	TTCGAA	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	549
PctI	GAATGC	2 cut(s)	77, 535
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	9
PkrI	GCNGC	3 cut(s)	429, 525, 541
Psp6I	CCWGG	2 cut(s)	549, 780
PspGI	CCWGG	2 cut(s)	549, 780
PspN4I	GGNNCC	2 cut(s)	734, 786
PspPI	GGNCC	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	351, 371, 435
SatI	GCNGC	3 cut(s)	428, 524, 540
Sau96I	GGNCC	1 cut(s)	778
ScrFI	CCNGG	2 cut(s)	551, 782
SfaNI	GCATC	2 cut(s)	621, 637
SfuI	TTCGAA	1 cut(s)	339
SmlI	CTYRAG	3 cut(s)	131, 350, 602
SmoI	CTYRAG	3 cut(s)	131, 350, 602
Sse9I	AATT	4 cut(s)	266, 333, 446, 471
SsiI	CCGC	3 cut(s)	238, 279, 736
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	549, 780
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	2 cut(s)	115, 421
TaqI	TCGA	1 cut(s)	339
TasI	AATT	4 cut(s)	266, 333, 446, 471
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	3 cut(s)	351, 371, 435
Tru9I	TTAA	3 cut(s)	351, 371, 435
TscAI	CASTG	2 cut(s)	509, 641
TseI	GCWGC	3 cut(s)	427, 523, 539
TspDTI	ATGAA	4 cut(s)	57, 160, 374, 674
TspRI	CASTG	2 cut(s)	509, 641
Vha464I	CTTAAG	1 cut(s)	350
XapI	RAATTY	3 cut(s)	266, 333, 471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	795
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.