Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006554

Physical Location & Seq

Genomic Coordinates Reverse (-)

43899806 .. 43901413

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018976

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGGAGTTGGTGGAGAGGTACCCAGTTATGGAACTCGAGAATGAGAGAGTGCAGGAGATAATGGAGGATTTGAGGTTGAAGTTTAGGGCGGTTTGTGCTTCTTTGGGTGTGAAATTGGAGTATAAATGGTACTCGAGAGCTTCTTCTTCTGGGGCTAAAGACGTTGCTGGCACTCGGATTAAGACCCGCAAACTGAATATTGCAGCGCTGCTGGACCCTGCAGCTTTTGCGGATGCAGTGGTCCAGATTTATCTGGATAATGTTGGTGATCTGGAACTTATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTTGTTTTCACTGGGGGCCGTACACAACTTGGAACAACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTGAGCCCAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATTTTGAGGCGGAGGCCATTTTTGATAAACAATCTCGAAAATAAGCTATCAGGACTTCTACCAGAATCGGTGTTCCAGCCAATGCTCAAGGATAATCTTGTTGGCAAAGGGCTAGTTCTATCATTTATAACTGAGTTCTTCAAGGAGTATCTGATTGACAATAGCCTTGATGATTTGATTTCGATTCTGAAATGGGGTAAAGTGGAGGATAATCTTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCTGAGCATTTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

251

Amino Acids

28.57

Weight (kDa)

5.07

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_5MP1_2	PF25504	61 - 179	3.8e-31	5MP1/2 HEAT domain
HEAT_5MP1_2	PF25504	177 - 250	1.4e-21	5MP1/2 HEAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65220 AT5G36230 AT5G36230
fragaria_vesca	FvH4_1g28180 FvH4_6g00450 FvH4_6g00450 FvH4_6g00450
malus_domestica	MD00G1113300.v1.1 MD04G1245300.v1.1 MD12G1086500.v1.1 MD13G1060900.v1.1
prunus_persica	Prupe.6G361900_v2.0.a1
pyrus_communis	pycom04g21600 pycom06g10770 pycom12g23900
rosa_chinensis	RchiOBHm_Chr3g0447821
rosa_laevigata	RLG00000018976 RLG00000025968
rosa_multiflora	Rmu_co8456651.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426020
rosa_rugosa	Rorug02G0606000
rosa_samantha	Rh3AG005500 Rh3BG005100 Rh3CG005400 Rh3DG005600
rosa_wichuraiana	Rw3G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	21
AciI	CCGC	5 cut(s)	92, 190, 233, 487, 711
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	4 cut(s)	23, 134, 367, 420
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	31, 395
AgsI	TTSAA	3 cut(s)	82, 299, 619
AhdI	GACNNNNNGTC	1 cut(s)	443
AjiI	CACGTC	1 cut(s)	440
AluBI	AGCT	3 cut(s)	143, 227, 523
AluI	AGCT	3 cut(s)	143, 227, 523
Ama87I	CYCGRG	2 cut(s)	38, 136
Aor51HI	AGCGCT	1 cut(s)	210
AoxI	GGCC	2 cut(s)	361, 491
ApeKI	GCWGC	3 cut(s)	206, 211, 224
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
Asp718I	GGTACC	1 cut(s)	21
AspLEI	GCGC	2 cut(s)	211, 405
AspS9I	GGNCC	3 cut(s)	217, 244, 361
AsuHPI	GGTGA	2 cut(s)	281, 341
AvaI	CYCGRG	2 cut(s)	38, 136
AvaII	GGWCC	2 cut(s)	217, 244
BanI	GGYRCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	435
BarI	GAAGNNNNNNTAC	2 cut(s)	435, 467
BbvI	GCAGC	3 cut(s)	198, 218, 236
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	422, 590
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	2 cut(s)	212, 406
BisI	GCNGC	4 cut(s)	207, 212, 225, 711
BlsI	GCNGC	4 cut(s)	208, 213, 226, 712
Bme18I	GGWCC	2 cut(s)	217, 244
BmeRI	GACNNNNNGTC	1 cut(s)	443
BmeT110I	CYCGRG	2 cut(s)	38, 136
BmgBI	CACGTC	1 cut(s)	440
BmgT120I	GGNCC	3 cut(s)	217, 244, 361
BmiI	GGNNCC	3 cut(s)	23, 219, 362
BmrI	ACTGGG	2 cut(s)	20, 366
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	2 cut(s)	20, 366
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
BpuEI	CTTGAG	2 cut(s)	304, 548
BsaAI	YACGTR	1 cut(s)	750
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 395
Bse1I	ACTGG	2 cut(s)	26, 361
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	31, 395
BseMII	CTCAG	4 cut(s)	420, 600, 714, 729
BseNI	ACTGG	2 cut(s)	26, 361
BseRI	GAGGAG	2 cut(s)	20, 740
BseXI	GCAGC	3 cut(s)	198, 218, 236
BseYI	CCCAGC	1 cut(s)	706
BsgI	GTGCAG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	363, 493
BshNI	GGYRCC	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	38, 136
BslI	CCNNNNNNNGG	2 cut(s)	31, 395
BsnI	GGCC	2 cut(s)	363, 493
BsoBI	CYCGRG	2 cut(s)	38, 136
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	5 cut(s)	92, 190, 233, 487, 711
BspANI	GGCC	2 cut(s)	363, 493
BspCNI	CTCAG	4 cut(s)	421, 601, 715, 730
BspLI	GGNNCC	3 cut(s)	23, 219, 362
BspMAI	CTGCAG	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	26, 361
BssMI	GATC	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	4 cut(s)	429, 609, 723, 738
BstF5I	GGATG	1 cut(s)	241
BstH2I	RGCGCY	2 cut(s)	212, 406
BstHHI	GCGC	2 cut(s)	211, 405
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 230
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	198, 218, 236
BsuRI	GGCC	2 cut(s)	363, 493
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	246, 354
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	2 cut(s)	211, 405
Cfr13I	GGNCC	3 cut(s)	217, 244, 361
Csp6I	GTAC	4 cut(s)	22, 133, 366, 419
CviQI	GTAC	4 cut(s)	22, 133, 366, 419
DdeI	CTNAG	4 cut(s)	429, 609, 723, 738
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DriI	GACNNNNNGTC	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	443
EciI	GGCGGA	1 cut(s)	502
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	217, 244
Eco47III	AGCGCT	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	2 cut(s)	38, 136
EcoT38I	GRGCYC	1 cut(s)	435
FaiI	YATR	5 cut(s)	32, 126, 452, 470, 605
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	4 cut(s)	207, 212, 225, 711
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	207, 212, 225, 711
FspBI	CTAG	2 cut(s)	422, 590
GlaI	GCGC	2 cut(s)	210, 404
GluI	GCNGC	4 cut(s)	207, 212, 225, 711
GsaI	CCCAGC	1 cut(s)	710
HaeII	RGCGCY	2 cut(s)	212, 406
HaeIII	GGCC	2 cut(s)	363, 493
HhaI	GCGC	2 cut(s)	211, 405
Hin6I	GCGC	2 cut(s)	209, 403
HinP1I	GCGC	2 cut(s)	209, 403
HinfI	GANTC	4 cut(s)	299, 425, 542, 661
HphI	GGTGA	2 cut(s)	281, 341
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	6 cut(s)	180, 307, 430, 630, 666, 739
Hpy188III	TCNNGA	9 cut(s)	40, 138, 247, 257, 275, 321, 512, 528, 695
Hpy8I	GTNNAC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	3 cut(s)	165, 439, 749
HpyCH4V	TGCA	4 cut(s)	55, 206, 224, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 230
HpyF3I	CTNAG	4 cut(s)	429, 609, 723, 738
HpySE526I	ACGT	3 cut(s)	165, 439, 749
HspAI	GCGC	2 cut(s)	209, 403
KpnI	GGTACC	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	3 cut(s)	198, 218, 236
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	2 cut(s)	422, 590
MaeII	ACGT	3 cut(s)	165, 439, 749
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	6 cut(s)	138, 141, 294, 607, 683, 694
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	9 cut(s)	12, 61, 69, 337, 388, 477, 483, 676, 718
MseI	TTAA	2 cut(s)	183, 312
MwoI	GCNNNNNNNGC	2 cut(s)	98, 230
NdeII	GATC	1 cut(s)	271
NlaIV	GGNNCC	3 cut(s)	23, 219, 362
NmuCI	GTSAC	1 cut(s)	329
PaeR7I	CTCGAG	2 cut(s)	38, 136
PfeI	GAWTC	3 cut(s)	299, 542, 661
PkrI	GCNGC	4 cut(s)	208, 213, 226, 712
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Ppu21I	YACGTR	1 cut(s)	750
PsiI	TTATAA	1 cut(s)	605
PspFI	CCCAGC	1 cut(s)	706
PspN4I	GGNNCC	3 cut(s)	23, 219, 362
PspPI	GGNCC	3 cut(s)	217, 244, 361
PstI	CTGCAG	1 cut(s)	226
RsaI	GTAC	4 cut(s)	23, 134, 367, 420
RsaNI	GTAC	4 cut(s)	22, 133, 366, 419
SaqAI	TTAA	2 cut(s)	183, 312
SatI	GCNGC	4 cut(s)	207, 212, 225, 711
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	3 cut(s)	217, 244, 361
SchI	GAGTC	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	222
Sfr274I	CTCGAG	2 cut(s)	38, 136
SinI	GGWCC	2 cut(s)	217, 244
SlaI	CTCGAG	2 cut(s)	38, 136
SmlI	CTYRAG	4 cut(s)	38, 136, 319, 563
SmoI	CTYRAG	4 cut(s)	38, 136, 319, 563
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	5 cut(s)	92, 190, 233, 487, 711
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	2 cut(s)	422, 590
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	3 cut(s)	168, 442, 752
TaqI	TCGA	4 cut(s)	39, 137, 513, 659
TasI	AATT	1 cut(s)	116
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	3 cut(s)	299, 542, 661
Tru1I	TTAA	2 cut(s)	183, 312
Tru9I	TTAA	2 cut(s)	183, 312
TscAI	CASTG	2 cut(s)	246, 361
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	3 cut(s)	206, 211, 224
Tsp45I	GTSAC	1 cut(s)	329
TspRI	CASTG	2 cut(s)	246, 361
VpaK11BI	GGWCC	2 cut(s)	217, 244
XhoI	CTCGAG	2 cut(s)	38, 136
XspI	CTAG	2 cut(s)	422, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.