Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006554

Physical Location & Seq

Genomic Coordinates Reverse (-)

10636026 .. 10638520

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1086500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCTCAAGGATAATCTTGTTGGCAAAGGGCTAGTTCTATCGTTCATTACTGAGTTTTTCAAGGAGTATTTGATTGATAATAGTCTTGATGATTTGATTTCCATTCTGAAGCGGGGTAAAGTGGAGGACAATCTTTTGGAATTCTTCCCTTCCGCAAAGAGAACCGAAGAGAGTTTCTCTGAGCATTTCACAAAGGAAGGGCTAGTTGCCTTAGTTGAGTACAACGAGAAGAAAATTTTCGAAGTGAAGCTTAAGGAAATGAAATCTGCTTTAACAACCCAGATAACAGAGGAAACCGATATGTCTGAAGTCATTGAGACTGTGAAGCAGCGTGTTAAAGACGCCAAATTGCCCGATGTTGAAGTTGTGCGAATTCTGTGGGATGTCATTATGGACGCTGTGCAGTGGTCTGGTAAGAACCAGCAGCAGAATGCTAATGCAGCTCTTCGCCAGGTGAAAACATGGGCAGAACTGCTGAACACCTTTTGCACGAATGGGAAGCTTGAGCTGGAACTGATGTACAAGGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTTTTCCCTGATATTGTAAAGTCCCTCTATGACGAGGATGTGCTTGCAGAAGACACCATTCTCCATTGGTTCCGCAAGGGAACAAACCCCAAGGGCAGGCAAACTTTTGTGAAGGCCCTGGAGCCATTGGTGAACTGGCTGGAGGAGGCAGAAGAGGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

243

Amino Acids

28.14

Weight (kDa)

4.84

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_5MP1_2	PF25504	1 - 83	5.2e-26	5MP1/2 HEAT domain
W2	PF02020	169 - 242	2.2e-20	eIF4-gamma/eIF5/eIF2-epsilon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65220 AT5G36230 AT5G36230
fragaria_vesca	FvH4_1g28180 FvH4_6g00450 FvH4_6g00450 FvH4_6g00450
malus_domestica	MD00G1113300.v1.1 MD04G1245300.v1.1 MD12G1086500.v1.1 MD13G1060900.v1.1
prunus_persica	Prupe.6G361900_v2.0.a1
pyrus_communis	pycom04g21600 pycom06g10770 pycom12g23900
rosa_chinensis	RchiOBHm_Chr3g0447821
rosa_laevigata	RLG00000018976 RLG00000025968
rosa_multiflora	Rmu_co8456651.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426020
rosa_rugosa	Rorug02G0606000
rosa_samantha	Rh3AG005500 Rh3BG005100 Rh3CG005400 Rh3DG005600
rosa_wichuraiana	Rw3G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	112, 153, 637
AcsI	RAATTY	3 cut(s)	140, 234, 372
AcuI	CTGAAG	2 cut(s)	128, 327
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	2 cut(s)	221, 521
AfiI	CCNNNNNNNGG	1 cut(s)	660
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	61, 362
AjnI	CCWGG	2 cut(s)	450, 681
AluBI	AGCT	6 cut(s)	250, 443, 502, 508, 556, 565
AluI	AGCT	6 cut(s)	250, 443, 502, 508, 556, 565
Alw26I	GTCTC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	678
ApeKI	GCWGC	3 cut(s)	328, 424, 440
ApoI	RAATTY	3 cut(s)	140, 234, 372
Asp700I	GAANNNNTTC	2 cut(s)	236, 566
AspS9I	GGNCC	1 cut(s)	679
AsuHPI	GGTGA	2 cut(s)	466, 706
AsuII	TTCGAA	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	621
BbvI	GCAGC	3 cut(s)	340, 436, 452
BciT130I	CCWGG	2 cut(s)	452, 683
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	32, 203
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	3 cut(s)	329, 425, 441
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	3 cut(s)	330, 426, 442
Bme1390I	CCNGG	2 cut(s)	452, 683
BmgT120I	GGNCC	1 cut(s)	679
BmiI	GGNNCC	2 cut(s)	635, 687
BmrFI	CCNGG	2 cut(s)	452, 683
BmsI	GCATC	2 cut(s)	522, 538
BpiI	GAAGAC	1 cut(s)	621
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BpmI	CTGGAG	2 cut(s)	704, 725
Bpu1102I	GCTNAGC	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	654, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	1 cut(s)	704
BseBI	CCWGG	2 cut(s)	452, 683
BseDI	CCNNGG	2 cut(s)	654, 681
BseGI	GGATG	3 cut(s)	388, 553, 607
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMII	CTCAG	2 cut(s)	42, 171
BseNI	ACTGG	1 cut(s)	704
BseRI	GAGGAG	1 cut(s)	722
BseXI	GCAGC	3 cut(s)	340, 436, 452
BsgI	GTGCAG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	680
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	680
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	519
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	3 cut(s)	112, 153, 637
BspANI	GGCC	1 cut(s)	680
BspCNI	CTCAG	2 cut(s)	43, 172
BspLI	GGNNCC	2 cut(s)	635, 687
BspQI	GCTCTTC	1 cut(s)	450
BspT104I	TTCGAA	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	704
BssECI	CCNNGG	2 cut(s)	654, 681
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	654
Bst2UI	CCWGG	2 cut(s)	452, 683
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	3 cut(s)	162, 450, 711
BstACI	GRCGYC	1 cut(s)	342
BstAFI	CTTAAG	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	609, 662
BstDEI	CTNAG	4 cut(s)	51, 180, 211, 552
BstF5I	GGATG	3 cut(s)	388, 553, 607
BstMAI	GTCTC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 562
BstNI	CCWGG	2 cut(s)	452, 683
BstSCI	CCNGG	2 cut(s)	450, 681
BstV1I	GCAGC	3 cut(s)	340, 436, 452
BstV2I	GAAGAC	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	680
BtsCI	GGATG	3 cut(s)	388, 553, 607
BtsI	GCAGTG	2 cut(s)	410, 542
BtsIMutI	CAGTG	2 cut(s)	410, 542
Cac8I	GCNNGC	2 cut(s)	609, 662
Cfr13I	GGNCC	1 cut(s)	679
CseI	GACGC	2 cut(s)	350, 404
Csp6I	GTAC	2 cut(s)	220, 520
CviAII	CATG	1 cut(s)	462
CviQI	GTAC	2 cut(s)	220, 520
DdeI	CTNAG	4 cut(s)	51, 180, 211, 552
Eam1104I	CTCTTC	3 cut(s)	162, 450, 711
EarI	CTCTTC	3 cut(s)	162, 450, 711
Eco130I	CCWWGG	1 cut(s)	654
Eco57I	CTGAAG	2 cut(s)	128, 327
EcoO109I	RGGNCCY	1 cut(s)	679
EcoRI	GAATTC	2 cut(s)	140, 372
EcoRII	CCWGG	2 cut(s)	450, 681
EcoT14I	CCWWGG	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	654
FaeI	CATG	1 cut(s)	465
FaiI	YATR	5 cut(s)	302, 392, 463, 543, 594
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	1 cut(s)	461
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	329, 425, 441
FokI	GGATG	3 cut(s)	395, 560, 614
Fsp4HI	GCNGC	3 cut(s)	329, 425, 441
FspBI	CTAG	2 cut(s)	32, 203
GluI	GCNGC	3 cut(s)	329, 425, 441
GsuI	CTGGAG	2 cut(s)	704, 725
HaeIII	GGCC	1 cut(s)	680
HgaI	GACGC	2 cut(s)	350, 404
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	465
HindIII	AAGCTT	3 cut(s)	248, 500, 563
HphI	GGTGA	2 cut(s)	466, 706
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	4 cut(s)	108, 181, 307, 531
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	697
HpyAV	CCTTC	3 cut(s)	159, 191, 670
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	5 cut(s)	403, 440, 489, 535, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 562
HpyF3I	CTNAG	4 cut(s)	51, 180, 211, 552
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	465
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	3 cut(s)	340, 436, 452
LweI	GCATC	2 cut(s)	522, 538
MaeI	CTAG	2 cut(s)	32, 203
MboII	GAAGA	6 cut(s)	136, 179, 241, 437, 626, 728
MluCI	AATT	4 cut(s)	140, 234, 347, 372
MnlI	CCTC	9 cut(s)	118, 283, 538, 592, 599, 700, 703, 712, 715
MroXI	GAANNNNTTC	2 cut(s)	236, 566
MseI	TTAA	3 cut(s)	252, 272, 336
MspCI	CTTAAG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	452, 683
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	2 cut(s)	452, 683
MwoI	GCNNNNNNNGC	2 cut(s)	440, 562
NlaIII	CATG	1 cut(s)	465
NlaIV	GGNNCC	2 cut(s)	635, 687
NspV	TTCGAA	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	450
PctI	GAATGC	1 cut(s)	436
PdmI	GAANNNNTTC	2 cut(s)	236, 566
PkrI	GCNGC	3 cut(s)	330, 426, 442
Psp6I	CCWGG	2 cut(s)	450, 681
PspGI	CCWGG	2 cut(s)	450, 681
PspN4I	GGNNCC	2 cut(s)	635, 687
PspPI	GGNCC	1 cut(s)	679
RsaI	GTAC	2 cut(s)	221, 521
RsaNI	GTAC	2 cut(s)	220, 520
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	252, 272, 336
SatI	GCNGC	3 cut(s)	329, 425, 441
Sau96I	GGNCC	1 cut(s)	679
ScrFI	CCNGG	2 cut(s)	452, 683
SetI	ASST	9 cut(s)	252, 445, 456, 485, 504, 510, 528, 558, 567
SfaNI	GCATC	2 cut(s)	522, 538
SfuI	TTCGAA	1 cut(s)	240
SmlI	CTYRAG	3 cut(s)	5, 251, 503
SmoI	CTYRAG	3 cut(s)	5, 251, 503
Sse9I	AATT	4 cut(s)	140, 234, 347, 372
SsiI	CCGC	3 cut(s)	112, 153, 637
SspMI	CTAG	2 cut(s)	32, 203
StyD4I	CCNGG	2 cut(s)	450, 681
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	240
TasI	AATT	4 cut(s)	140, 234, 347, 372
TatI	WGTACW	2 cut(s)	219, 519
Tru1I	TTAA	3 cut(s)	252, 272, 336
Tru9I	TTAA	3 cut(s)	252, 272, 336
TscAI	CASTG	2 cut(s)	410, 542
TseI	GCWGC	3 cut(s)	328, 424, 440
TspDTI	ATGAA	3 cut(s)	34, 275, 575
TspRI	CASTG	2 cut(s)	410, 542
Vha464I	CTTAAG	1 cut(s)	251
XapI	RAATTY	3 cut(s)	140, 234, 372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	696
XmnI	GAANNNNTTC	2 cut(s)	236, 566
XspI	CTAG	2 cut(s)	32, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.