Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006554

Physical Location & Seq

Genomic Coordinates Reverse (-)

72318308 .. 72368031

Gene Structure 49724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0606000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCACCAAAATCTGATCTTTCTCTTTTCACAGTCACTCTGCTCCTCCTCCTCCTCGCCCTCTTTTCTTTCCTCTCTAATGCAAGGGCAAACTCATCTCCGTTTGAGTTCCTTGAGCATCTTAAGGGTTGTCACAAAGGTGACAAGGTCAAGGGCATCAATGACCTCAAGAAGTACCTTCAAAAGTTCGGTTACTTAAACTACGAGAACCACAGACATTTCAACGATGATGATTTTGACGAGCTCTTGGAGGAAGCCGTCAAGACTTACCAGCTCAATTTCCACCTCAAGTCCACGGGAACATTGGACGACAAAACCGTATCAACGATGATGATGCCTCGTTGTGGTGTGCCCGATATCATCAATGGCACCACGTCCATGAGATCAGCCCAGATAAAGCGCCAGCACCGTGCAATTCATACCACCGTTCACTACTCATTTCCCGATGGAAATCTAAAATGGCCTTCTTCAAAATACCATCTGACTTACAGTTTTCTCGCTGGCACCCCATCCGAAGCCCCAGGTGCTGTCGCACAGGCTTTCTCATCATGGGCTAAGAACACTCACTTCAAATTCAGCAAGGCTCAAAATTACCAGAGTGCGGATTTGAAGGTTAGCTTTCATAAGGGTGATCATGGAGACGGGAATGCATTTGATGGGCCTGGAGGACAGCTGGCCCATGCTGCTTACCCTACGGAGGGAACATTGCACTACGACGCAGATGAGACTTGGTCTGTAGGTGCTAAACCAGGTGCCGTAGACATTGAGAGTGTTGGTTTGCATGAAATAGGGCACCTTCTGGGACTTGGACACAGCTCAGTGGAGGAAGCTATCATGTATCCAACCATCCCCGAGGGAGTGGTTCATAAAAGTTTGCATGAGGACGATATTCAAGGAATAAAAGCTTTATACAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

306

Amino Acids

33.86

Weight (kDa)

6.24

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	53 - 110	6e-10	Putative peptidoglycan binding domain
Peptidase_M10	PF00413	153 - 304	4e-46	Matrixin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65220 AT5G36230 AT5G36230
fragaria_vesca	FvH4_1g28180 FvH4_6g00450 FvH4_6g00450 FvH4_6g00450
malus_domestica	MD00G1113300.v1.1 MD04G1245300.v1.1 MD12G1086500.v1.1 MD13G1060900.v1.1
prunus_persica	Prupe.6G361900_v2.0.a1
pyrus_communis	pycom04g21600 pycom06g10770 pycom12g23900
rosa_chinensis	RchiOBHm_Chr3g0447821
rosa_laevigata	RLG00000018976 RLG00000025968
rosa_multiflora	Rmu_co8456651.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426020
rosa_rugosa	Rorug02G0606000
rosa_samantha	Rh3AG005500 Rh3BG005100 Rh3CG005400 Rh3DG005600
rosa_wichuraiana	Rw3G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	4, 368, 503, 752, 792
AccI	GTMKAC	1 cut(s)	759
AciI	CCGC	1 cut(s)	602
AclI	AACGTT	1 cut(s)	915
AcsI	RAATTY	1 cut(s)	572
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	344, 601, 697, 698
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	6 cut(s)	182, 223, 471, 571, 610, 893
AjiI	CACGTC	1 cut(s)	375
AjnI	CCWGG	3 cut(s)	520, 661, 748
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	7 cut(s)	244, 274, 618, 673, 816, 830, 905
AluI	AGCT	7 cut(s)	244, 274, 618, 673, 816, 830, 905
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	2 cut(s)	633, 719
AlwNI	CAGNNNCTG	1 cut(s)	527
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	3 cut(s)	461, 659, 675
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	659, 676
AsuHPI	GGTGA	2 cut(s)	152, 641
AvaI	CYCGRG	1 cut(s)	851
BaeGI	GKGCMC	2 cut(s)	354, 795
BanI	GGYRCC	5 cut(s)	4, 368, 503, 752, 792
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	5 cut(s)	440, 486, 517, 650, 854
BceAI	ACGGC	2 cut(s)	242, 740
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	3 cut(s)	522, 663, 750
BciVI	GTATCC	1 cut(s)	849
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	2 cut(s)	633, 719
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	403
BfrI	CTTAAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	849
BisI	GCNGC	1 cut(s)	684
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	3 cut(s)	522, 663, 750
BmeT110I	CYCGRG	1 cut(s)	851
BmgBI	CACGTC	1 cut(s)	375
BmgT120I	GGNCC	2 cut(s)	659, 676
BmiI	GGNNCC	5 cut(s)	6, 370, 505, 754, 794
BmrFI	CCNGG	3 cut(s)	522, 663, 750
BmsI	GCATC	3 cut(s)	127, 165, 324
BpmI	CTGGAG	1 cut(s)	684
BpuEI	CTTGAG	3 cut(s)	134, 152, 272
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	3 cut(s)	294, 520, 852
Bsc4I	CCNNNNNNNGG	4 cut(s)	344, 601, 697, 698
Bse3DI	GCAATG	1 cut(s)	704
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	522, 663, 750
BseDI	CCNNGG	3 cut(s)	294, 520, 852
BseGI	GGATG	2 cut(s)	509, 846
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	4 cut(s)	344, 601, 697, 698
BseMI	GCAATG	1 cut(s)	704
BseMII	CTCAG	1 cut(s)	831
BseRI	GAGGAG	4 cut(s)	35, 38, 41, 44
BseSI	GKGCMC	2 cut(s)	354, 795
BseXI	GCAGC	1 cut(s)	670
BshFI	GGCC	3 cut(s)	463, 661, 677
BshNI	GGYRCC	5 cut(s)	4, 368, 503, 752, 792
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	851
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	4 cut(s)	344, 601, 697, 698
BsmAI	GTCTC	2 cut(s)	633, 719
BsmBI	CGTCTC	1 cut(s)	633
BsmFI	GGGAC	1 cut(s)	816
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	3 cut(s)	463, 661, 677
BsoBI	CYCGRG	1 cut(s)	851
Bsp1286I	GDGCHC	3 cut(s)	246, 354, 795
Bsp143I	GATC	3 cut(s)	16, 383, 631
BspACI	CCGC	1 cut(s)	602
BspANI	GGCC	3 cut(s)	463, 661, 677
BspCNI	CTCAG	1 cut(s)	830
BspLI	GGNNCC	5 cut(s)	6, 370, 505, 754, 794
BspT107I	GGYRCC	5 cut(s)	4, 368, 503, 752, 792
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	704
BssECI	CCNNGG	3 cut(s)	294, 520, 852
BssMI	GATC	3 cut(s)	16, 383, 631
Bst2UI	CCWGG	3 cut(s)	522, 663, 750
Bst4CI	ACNGT	5 cut(s)	34, 319, 410, 427, 491
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	404, 502, 675
BstDEI	CTNAG	2 cut(s)	555, 817
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	509, 846
BstH2I	RGCGCY	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	3 cut(s)	19, 386, 634
BstMAI	GTCTC	2 cut(s)	633, 719
BstMBI	GATC	3 cut(s)	16, 383, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 683
BstNI	CCWGG	3 cut(s)	522, 663, 750
BstSCI	CCNGG	3 cut(s)	520, 661, 748
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	2 cut(s)	354, 795
BstV1I	GCAGC	1 cut(s)	670
BsuI	GTATCC	1 cut(s)	849
BsuRI	GGCC	3 cut(s)	463, 661, 677
BtgI	CCRYGG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	509, 846
BtsIMutI	CAGTG	1 cut(s)	825
Cac8I	GCNNGC	3 cut(s)	404, 502, 675
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	659, 676
CseI	GACGC	1 cut(s)	725
CsiI	ACCWGGT	1 cut(s)	748
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	7 cut(s)	379, 549, 635, 680, 782, 835, 878
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	555, 817
DpnI	GATC	3 cut(s)	18, 385, 633
DpnII	GATC	3 cut(s)	16, 383, 631
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	851
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	3 cut(s)	520, 661, 748
EcoRV	GATATC	1 cut(s)	358
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	633
FaeI	CATG	7 cut(s)	382, 552, 638, 683, 785, 838, 881
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	7 cut(s)	378, 548, 634, 679, 781, 834, 877
FbaI	TGATCA	1 cut(s)	631
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	2 cut(s)	496, 833
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	684
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	1 cut(s)	684
GsuI	CTGGAG	1 cut(s)	684
HaeII	RGCGCY	1 cut(s)	403
HaeIII	GGCC	3 cut(s)	463, 661, 677
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	7 cut(s)	382, 552, 638, 683, 785, 838, 881
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	903
HphI	GGTGA	2 cut(s)	152, 641
Hpy166II	GTNNAC	3 cut(s)	294, 430, 760
Hpy188I	TCNGA	3 cut(s)	16, 483, 514
Hpy188III	TCNNGA	3 cut(s)	169, 262, 443
Hpy8I	GTNNAC	3 cut(s)	294, 430, 760
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	4 cut(s)	188, 474, 604, 806
HpyCH4III	ACNGT	5 cut(s)	34, 319, 410, 427, 491
HpyCH4IV	ACGT	2 cut(s)	374, 915
HpyCH4V	TGCA	6 cut(s)	83, 413, 650, 709, 781, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 683
HpyF3I	CTNAG	2 cut(s)	555, 817
HpySE526I	ACGT	2 cut(s)	374, 915
Hsp92II	CATG	7 cut(s)	382, 552, 638, 683, 785, 838, 881
HspAI	GCGC	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	3 cut(s)	16, 383, 631
LmnI	GCTCC	1 cut(s)	48
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	3 cut(s)	127, 165, 324
MabI	ACCWGGT	1 cut(s)	748
MaeII	ACGT	2 cut(s)	374, 915
MaeIII	GTNAC	4 cut(s)	34, 131, 140, 191
MalI	GATC	3 cut(s)	18, 385, 633
MboI	GATC	3 cut(s)	16, 383, 631
MboII	GAAGA	1 cut(s)	459
MhlI	GDGCHC	3 cut(s)	246, 354, 795
MluCI	AATT	4 cut(s)	277, 414, 572, 589
MmeI	TCCRAC	1 cut(s)	866
Mph1103I	ATGCAT	1 cut(s)	652
MseI	TTAA	2 cut(s)	123, 197
MslI	CAYNNNNRTG	3 cut(s)	138, 377, 627
MspA1I	CMGCKG	1 cut(s)	673
MspCI	CTTAAG	1 cut(s)	122
MspR9I	CCNGG	3 cut(s)	522, 663, 750
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	3 cut(s)	522, 663, 750
MwoI	GCNNNNNNNGC	2 cut(s)	524, 683
NdeII	GATC	3 cut(s)	16, 383, 631
NlaIII	CATG	7 cut(s)	382, 552, 638, 683, 785, 838, 881
NlaIV	GGNNCC	5 cut(s)	6, 370, 505, 754, 794
NmuCI	GTSAC	3 cut(s)	34, 131, 140
NsiI	ATGCAT	1 cut(s)	652
OliI	CACNNNNGTG	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PctI	GAATGC	1 cut(s)	652
PflFI	GACNNNGTC	2 cut(s)	146, 730
PkrI	GCNGC	1 cut(s)	685
Psp124BI	GAGCTC	1 cut(s)	246
Psp1406I	AACGTT	1 cut(s)	915
Psp6I	CCWGG	3 cut(s)	520, 661, 748
PspGI	CCWGG	3 cut(s)	520, 661, 748
PspN4I	GGNNCC	5 cut(s)	6, 370, 505, 754, 794
PspPI	GGNCC	2 cut(s)	659, 676
PstNI	CAGNNNCTG	1 cut(s)	527
PsyI	GACNNNGTC	2 cut(s)	146, 730
PvuII	CAGCTG	1 cut(s)	673
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	3 cut(s)	138, 377, 627
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	123, 197
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	3 cut(s)	16, 383, 631
Sau96I	GGNCC	2 cut(s)	659, 676
ScrFI	CCNGG	3 cut(s)	522, 663, 750
SduI	GDGCHC	3 cut(s)	246, 354, 795
SexAI	ACCWGGT	1 cut(s)	748
SfaNI	GCATC	3 cut(s)	127, 165, 324
SfcI	CTRYAG	1 cut(s)	735
SmiMI	CAYNNNNRTG	3 cut(s)	138, 377, 627
SmlI	CTYRAG	4 cut(s)	113, 122, 167, 287
SmoI	CTYRAG	4 cut(s)	113, 122, 167, 287
Sse9I	AATT	4 cut(s)	277, 414, 572, 589
SsiI	CCGC	1 cut(s)	602
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	520, 661, 748
TaaI	ACNGT	5 cut(s)	34, 319, 410, 427, 491
TaiI	ACGT	2 cut(s)	377, 918
TasI	AATT	4 cut(s)	277, 414, 572, 589
Tru1I	TTAA	2 cut(s)	123, 197
Tru9I	TTAA	2 cut(s)	123, 197
TscAI	CASTG	1 cut(s)	825
TseFI	GTSAC	3 cut(s)	34, 131, 140
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	3 cut(s)	34, 131, 140
TspDTI	ATGAA	4 cut(s)	407, 611, 798, 854
TspGWI	ACGGA	2 cut(s)	90, 710
TspRI	CASTG	1 cut(s)	825
Tth111I	GACNNNGTC	2 cut(s)	146, 730
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	759
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.