Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006554

Physical Location & Seq

Genomic Coordinates Forward (+)

16029299 .. 16031319

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTATTTCTTGTATTTCTGTTTCTTTTTCGTTTCGATCCAGTTTCTTGTGGTCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGCGGATGCAGTGGTCCAGATATATCTGGATAATGCTGGTGATCTGGAACTTATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTTGTTTTCACTGGAGGCCGTACACAACCTGGAACAACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTATTAGAGTCTGAGCCTACGCGTGAACTCATCTTGCCATCGGTTATATACCTTCAAAAAATTTTGAGGCGGAGGCCATTTCTGATTAAGAATCTTGAAAATGTTATGCGACGATTCCTTCAATCGTTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTGGCTATTTTCACAGCACTTGCATTCTCTCAGAATCTGTCAGGACTTCCACCGGAAACGGTGTTCCAGCCAATGCTCAAGGATAATCTTGTTGGCAAAGGGCTAGTTCTATCGTTCATTACTGATTTTTTCAAGGAGTATTTGATTGATAATAGTCTTGATGATTTGATTTCCATTCTGAAGCGGGGTAAAGTGGAGGACAATCTTTTGGAATTCTTCCCATCCGCAAAGAGAACTGAAGAGAATTTCTCTGAGCATTTCACGAAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

252

Amino Acids

28.83

Weight (kDa)

5.88

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65220 AT5G36230 AT5G36230
fragaria_vesca	FvH4_1g28180 FvH4_6g00450 FvH4_6g00450 FvH4_6g00450
malus_domestica	MD00G1113300.v1.1 MD04G1245300.v1.1 MD12G1086500.v1.1 MD13G1060900.v1.1
prunus_persica	Prupe.6G361900_v2.0.a1
pyrus_communis	pycom04g21600 pycom06g10770 pycom12g23900
rosa_chinensis	RchiOBHm_Chr3g0447821
rosa_laevigata	RLG00000018976 RLG00000025968
rosa_multiflora	Rmu_co8456651.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426020
rosa_rugosa	Rorug02G0606000
rosa_samantha	Rh3AG005500 Rh3BG005100 Rh3CG005400 Rh3DG005600
rosa_wichuraiana	Rw3G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	85, 346
AciI	CCGC	7 cut(s)	85, 97, 119, 140, 394, 667, 708
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	3 cut(s)	384, 695, 727
AcuI	CTGAAG	3 cut(s)	195, 683, 741
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	74, 102, 302
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	5 cut(s)	206, 380, 422, 446, 616
AjnI	CCWGG	1 cut(s)	280
AloI	GAACNNNNNNTCC	2 cut(s)	530, 562
AluBI	AGCT	3 cut(s)	134, 457, 484
AluI	AGCT	3 cut(s)	134, 457, 484
Alw26I	GTCTC	2 cut(s)	58, 58
AlwI	GGATC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	520
AoxI	GGCC	2 cut(s)	268, 398
ApeKI	GCWGC	2 cut(s)	113, 131
ApoI	RAATTY	3 cut(s)	384, 695, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspLEI	GCGC	2 cut(s)	118, 312
AspS9I	GGNCC	2 cut(s)	124, 151
AsuHPI	GGTGA	2 cut(s)	188, 248
AvaII	GGWCC	2 cut(s)	124, 151
BbvI	GCAGC	2 cut(s)	125, 143
BccI	CCATC	2 cut(s)	370, 712
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	58, 58
BfaI	CTAG	2 cut(s)	587, 754
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	2 cut(s)	119, 313
BisI	GCNGC	3 cut(s)	114, 119, 132
BlsI	GCNGC	3 cut(s)	115, 120, 133
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	2 cut(s)	124, 151
BmgT120I	GGNCC	2 cut(s)	124, 151
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	133
BplI	GAGNNNNNCTC	4 cut(s)	55, 87, 716, 748
BpmI	CTGGAG	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	211, 545
BsaI	GGTCTC	2 cut(s)	58, 58
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 102, 302
Bse1I	ACTGG	2 cut(s)	40, 268
BseBI	CCWGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	148, 704
BseLI	CCNNNNNNNGG	3 cut(s)	74, 102, 302
BseMII	CTCAG	3 cut(s)	327, 527, 726
BseNI	ACTGG	2 cut(s)	40, 268
BseXI	GCAGC	2 cut(s)	125, 143
Bsh1236I	CGCG	2 cut(s)	85, 346
BshFI	GGCC	2 cut(s)	270, 400
BsiSI	CCGG	1 cut(s)	536
BslI	CCNNNNNNNGG	3 cut(s)	74, 102, 302
BsmAI	GTCTC	2 cut(s)	58, 58
BsmI	GAATGC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	270, 400
Bso31I	GGTCTC	2 cut(s)	58, 58
Bsp143I	GATC	2 cut(s)	36, 178
BspACI	CCGC	7 cut(s)	85, 97, 119, 140, 394, 667, 708
BspANI	GGCC	2 cut(s)	270, 400
BspCNI	CTCAG	3 cut(s)	328, 526, 727
BspFNI	CGCG	2 cut(s)	85, 346
BspLI	GGNNCC	1 cut(s)	126
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	31
BspTNI	GGTCTC	2 cut(s)	58, 58
BsrI	ACTGG	2 cut(s)	40, 268
BssMI	GATC	2 cut(s)	36, 178
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	236, 544
Bst6I	CTCTTC	1 cut(s)	717
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	83, 486
BstDEI	CTNAG	3 cut(s)	336, 513, 735
BstF5I	GGATG	2 cut(s)	148, 704
BstFNI	CGCG	2 cut(s)	85, 346
BstH2I	RGCGCY	2 cut(s)	119, 313
BstHHI	GCGC	2 cut(s)	118, 312
BstKTI	GATC	2 cut(s)	39, 181
BstMAI	GTCTC	2 cut(s)	58, 58
BstMBI	GATC	2 cut(s)	36, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	2 cut(s)	85, 346
BstV1I	GCAGC	2 cut(s)	125, 143
BsuRI	GGCC	2 cut(s)	270, 400
BtsCI	GGATG	2 cut(s)	148, 704
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 261
Cac8I	GCNNGC	2 cut(s)	83, 486
CaiI	CAGNNNCTG	1 cut(s)	520
CfoI	GCGC	2 cut(s)	118, 312
Cfr13I	GGNCC	2 cut(s)	124, 151
Csp6I	GTAC	1 cut(s)	273
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	3 cut(s)	336, 513, 735
DpnI	GATC	2 cut(s)	38, 180
DpnII	GATC	2 cut(s)	36, 178
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
EciI	GGCGGA	1 cut(s)	409
Eco31I	GGTCTC	2 cut(s)	58, 58
Eco47I	GGWCC	2 cut(s)	124, 151
Eco57I	CTGAAG	3 cut(s)	195, 683, 741
EcoRI	GAATTC	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	280
FaiI	YATR	4 cut(s)	160, 371, 373, 431
FauI	CCCGC	2 cut(s)	104, 660
Fnu4HI	GCNGC	3 cut(s)	114, 119, 132
FokI	GGATG	2 cut(s)	155, 691
Fsp4HI	GCNGC	3 cut(s)	114, 119, 132
FspBI	CTAG	2 cut(s)	587, 754
GlaI	GCGC	2 cut(s)	117, 311
GluI	GCNGC	3 cut(s)	114, 119, 132
GsuI	CTGGAG	1 cut(s)	285
HaeII	RGCGCY	2 cut(s)	119, 313
HaeIII	GGCC	2 cut(s)	270, 400
HapII	CCGG	1 cut(s)	536
HhaI	GCGC	2 cut(s)	118, 312
Hin6I	GCGC	2 cut(s)	116, 310
HinP1I	GCGC	2 cut(s)	116, 310
HinfI	GANTC	5 cut(s)	206, 332, 415, 438, 517
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	2 cut(s)	188, 248
Hpy166II	GTNNAC	2 cut(s)	275, 350
Hpy188I	TCNGA	6 cut(s)	214, 337, 408, 516, 663, 736
Hpy188III	TCNNGA	9 cut(s)	55, 154, 164, 182, 228, 419, 525, 641, 745
Hpy8I	GTNNAC	2 cut(s)	275, 350
Hpy99I	CGWCG	1 cut(s)	438
HpyAV	CCTTC	4 cut(s)	52, 386, 452, 742
HpyCH4III	ACNGT	2 cut(s)	236, 544
HpyCH4V	TGCA	4 cut(s)	113, 131, 146, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	3 cut(s)	336, 513, 735
HspAI	GCGC	2 cut(s)	116, 310
Kzo9I	GATC	2 cut(s)	36, 178
LmnI	GCTCC	2 cut(s)	307, 454
Lsp1109I	GCAGC	2 cut(s)	125, 143
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	587, 754
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	38, 180
MboI	GATC	2 cut(s)	36, 178
MboII	GAAGA	4 cut(s)	201, 490, 691, 734
MluCI	AATT	3 cut(s)	384, 695, 727
MluI	ACGCGT	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	7 cut(s)	244, 260, 295, 384, 390, 457, 673
MseI	TTAA	3 cut(s)	90, 219, 411
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	2 cut(s)	85, 346
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	2 cut(s)	36, 178
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	4 cut(s)	206, 415, 438, 517
PkrI	GCNGC	3 cut(s)	115, 120, 133
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	124, 151
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	520
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	90, 219, 411
SatI	GCNGC	3 cut(s)	114, 119, 132
Sau3AI	GATC	2 cut(s)	36, 178
Sau96I	GGNCC	2 cut(s)	124, 151
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	9 cut(s)	136, 219, 245, 255, 283, 298, 378, 459, 486
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	2 cut(s)	124, 151
SmlI	CTYRAG	2 cut(s)	226, 560
SmoI	CTYRAG	2 cut(s)	226, 560
Sse9I	AATT	3 cut(s)	384, 695, 727
SsiI	CCGC	7 cut(s)	85, 97, 119, 140, 394, 667, 708
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	2 cut(s)	587, 754
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	236, 544
TaqI	TCGA	2 cut(s)	35, 56
TasI	AATT	3 cut(s)	384, 695, 727
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	4 cut(s)	206, 415, 438, 517
Tru1I	TTAA	3 cut(s)	90, 219, 411
Tru9I	TTAA	3 cut(s)	90, 219, 411
TscAI	CASTG	2 cut(s)	153, 268
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	113, 131
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	486, 589
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	153, 268
VpaK11BI	GGWCC	2 cut(s)	124, 151
XapI	RAATTY	3 cut(s)	384, 695, 727
XspI	CTAG	2 cut(s)	587, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.