Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006554

Physical Location & Seq

Genomic Coordinates Forward (+)

14273345 .. 14277057

Gene Structure 3713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G36230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAGCTCGAAGGAGAAACCCACTCTCGGAGGTACGCGGATTAAGACCCGCAAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCAGTGGTCCAGATTTACCATGATAATGCTGGTGATCTGGAACTTGTTGCCAAAAGTATTGAGTCATCAGACCTTAATTTCACAAGATATGGTGACATCTTCTTTGAGGTTATTTTCATAGGAGGACGCACACAACCTGGAACAGTGAAATCTGATGAAGGAGAACGTCATACTTACTCTGTAATTGATTGTGAACCCAAGCGTGAAGCCATTTTGCCATCTGTTGTCTACATACAGAAAATTCTGCGTAGGAAGCCTTTCCTCATAAAGAACCTTGAAAATGTTACTCGGAGATTCCTGCAGTCACTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTTGCTATCTTCACAGCACTTGCCTTTTCCCAGAAGCTCTCAGGATTACCTCCGGAAACTGTCTTCCAGCCATTGCTCAAGGATAATCTTGTTGCCAAAGGGATAGTGCTCTCCTTCGTAACAGACTTCTTCAAGGAGTATTTGGTTGAGAACAGTCTTGAAGACTTGATTTCTATTCTGAGGCGTGGGAAAATGGAAGACAACCTTATGGATTTCCTACCACCAGTAAGGCGATCTGCTGAAAGTTTTGCGGAACATTTCACGAATGAAGGATTGACTGATCTAGTAGAGTACCATTCAAAGAAAATGTTTGAGGTGAAACTGAGGGAAATCAAAACCGTTCTTACAAGCAAGGTCACAGAGGAAAGTAATGTAGACGAAGTCATTGAATCGGTGAAGCAACAGATCAAAGATGCTAAGTTACCTGACATTGAGGTTGTGCGTGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAATGCAAATTCTGTTCTGCGCCAGGTGAAAACATGGGCTCCACTTCTGAACACGTTCTGTACCAGCGGAAAGCTAGAGCTGGAACTGATGTACAAAGTCCAAATGCAATGCTATGAGGATGCAAAGCTTATGAAAGTTTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTCCTCGCTGAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAGGCAAACCTTTGTGAAAAGTTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCGGAGGAAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

411

Amino Acids

47.21

Weight (kDa)

5.51

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_5MP1_2	PF25504	14 - 252	1.4e-82	5MP1/2 HEAT domain
W2	PF02020	338 - 411	3.5e-20	eIF4-gamma/eIF5/eIF2-epsilon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65220 AT5G36230 AT5G36230
fragaria_vesca	FvH4_1g28180 FvH4_6g00450 FvH4_6g00450 FvH4_6g00450
malus_domestica	MD00G1113300.v1.1 MD04G1245300.v1.1 MD12G1086500.v1.1 MD13G1060900.v1.1
prunus_persica	Prupe.6G361900_v2.0.a1
pyrus_communis	pycom04g21600 pycom06g10770 pycom12g23900
rosa_chinensis	RchiOBHm_Chr3g0447821
rosa_laevigata	RLG00000018976 RLG00000025968
rosa_multiflora	Rmu_co8456651.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426020
rosa_rugosa	Rorug02G0606000
rosa_samantha	Rh3AG005500 Rh3BG005100 Rh3CG005400 Rh3DG005600
rosa_wichuraiana	Rw3G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	324, 810
AccII	CGCG	1 cut(s)	37
AccIII	TCCGGA	1 cut(s)	487
AciI	CCGC	5 cut(s)	37, 49, 686, 1002, 1220
AcsI	RAATTY	2 cut(s)	336, 943
AcuI	CTGAAG	1 cut(s)	1140
AfaI	GTAC	4 cut(s)	34, 728, 997, 1028
AfiI	CCNNNNNNNGG	2 cut(s)	26, 54
AflIII	ACRYGT	1 cut(s)	987
AgsI	TTSAA	6 cut(s)	374, 568, 596, 735, 824, 1214
AjnI	CCWGG	2 cut(s)	232, 957
AloI	GAACNNNNNNTCC	2 cut(s)	1095, 1127
AluBI	AGCT	7 cut(s)	6, 409, 436, 472, 1009, 1015, 1063
AluI	AGCT	7 cut(s)	6, 409, 436, 472, 1009, 1015, 1063
Alw21I	GWGCWC	2 cut(s)	8, 546
AlwNI	CAGNNNCTG	1 cut(s)	403
Aor13HI	TCCGGA	1 cut(s)	487
ApeKI	GCWGC	3 cut(s)	65, 83, 931
ApoI	RAATTY	2 cut(s)	336, 943
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
Asp700I	GAANNNNTTC	3 cut(s)	353, 989, 1073
AspLEI	GCGC	1 cut(s)	957
AspS9I	GGNCC	2 cut(s)	76, 103
AsuHPI	GGTGA	5 cut(s)	140, 200, 763, 841, 973
AvaII	GGWCC	2 cut(s)	76, 103
BanII	GRGCYC	2 cut(s)	8, 976
BbsI	GAAGAC	4 cut(s)	490, 603, 639, 1128
Bbv12I	GWGCWC	2 cut(s)	8, 546
BbvI	GCAGC	3 cut(s)	52, 95, 943
BccI	CCATC	2 cut(s)	322, 884
BciT130I	CCWGG	2 cut(s)	234, 959
BfaI	CTAG	2 cut(s)	719, 1010
BfmI	CTRYAG	2 cut(s)	81, 395
BisI	GCNGC	3 cut(s)	66, 84, 932
BlsI	GCNGC	3 cut(s)	67, 85, 933
Bme1390I	CCNGG	2 cut(s)	234, 959
Bme18I	GGWCC	2 cut(s)	76, 103
BmgT120I	GGNCC	2 cut(s)	76, 103
BmiI	GGNNCC	4 cut(s)	78, 975, 1142, 1153
BmrFI	CCNGG	2 cut(s)	234, 959
BmsI	GCATC	4 cut(s)	85, 838, 892, 1045
BpiI	GAAGAC	4 cut(s)	490, 603, 639, 1128
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	497
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	958, 988
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 54
Bse1I	ACTGG	3 cut(s)	408, 659, 1142
Bse3DI	GCAATG	2 cut(s)	506, 1049
BseAI	TCCGGA	1 cut(s)	487
BseBI	CCWGG	2 cut(s)	234, 959
BseGI	GGATG	3 cut(s)	895, 907, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	26, 54
BseMI	GCAATG	2 cut(s)	506, 1049
BseMII	CTCAG	3 cut(s)	489, 605, 749
BseNI	ACTGG	3 cut(s)	408, 659, 1142
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	52, 95, 943
Bsh1236I	CGCG	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	8, 546
BsiSI	CCGG	1 cut(s)	488
BslI	CCNNNNNNNGG	2 cut(s)	26, 54
Bsp1286I	GDGCHC	3 cut(s)	8, 546, 976
Bsp13I	TCCGGA	1 cut(s)	487
Bsp1407I	TGTACA	1 cut(s)	1026
Bsp143I	GATC	4 cut(s)	130, 668, 715, 840
BspACI	CCGC	5 cut(s)	37, 49, 686, 1002, 1220
BspCNI	CTCAG	3 cut(s)	488, 606, 750
BspEI	TCCGGA	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	4 cut(s)	78, 975, 1142, 1153
BspMAI	CTGCAG	2 cut(s)	85, 399
BsrDI	GCAATG	2 cut(s)	506, 1049
BsrGI	TGTACA	1 cut(s)	1026
BsrI	ACTGG	3 cut(s)	408, 659, 1142
BssMI	GATC	4 cut(s)	130, 668, 715, 840
Bst2UI	CCWGG	2 cut(s)	234, 959
Bst4CI	ACNGT	4 cut(s)	241, 496, 590, 775
Bst6I	CTCTTC	2 cut(s)	1209, 1224
BstAUI	TGTACA	1 cut(s)	1026
BstC8I	GCNNGC	2 cut(s)	438, 1169
BstDEI	CTNAG	4 cut(s)	475, 614, 758, 852
BstF5I	GGATG	3 cut(s)	895, 907, 1060
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	957
BstKTI	GATC	4 cut(s)	133, 671, 718, 843
BstMBI	GATC	4 cut(s)	130, 668, 715, 840
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	2 cut(s)	234, 959
BstSCI	CCNGG	2 cut(s)	232, 957
BstSFI	CTRYAG	2 cut(s)	81, 395
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	52, 95, 943
BstV2I	GAAGAC	4 cut(s)	490, 603, 639, 1128
BtsCI	GGATG	3 cut(s)	895, 907, 1060
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	5 cut(s)	105, 246, 401, 917, 1135
Cac8I	GCNNGC	2 cut(s)	438, 1169
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	1 cut(s)	957
Cfr13I	GGNCC	2 cut(s)	76, 103
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	4 cut(s)	33, 727, 996, 1027
CviAII	CATG	2 cut(s)	116, 969
CviQI	GTAC	4 cut(s)	33, 727, 996, 1027
DdeI	CTNAG	4 cut(s)	475, 614, 758, 852
DpnI	GATC	4 cut(s)	132, 670, 717, 842
DpnII	GATC	4 cut(s)	130, 668, 715, 840
Eam1104I	CTCTTC	2 cut(s)	1209, 1224
EarI	CTCTTC	2 cut(s)	1209, 1224
EciI	GGCGGA	1 cut(s)	1235
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	8, 976
Eco47I	GGWCC	2 cut(s)	76, 103
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	1140
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	232, 957
EcoT38I	GRGCYC	2 cut(s)	8, 976
FaeI	CATG	2 cut(s)	119, 972
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FatI	CATG	2 cut(s)	115, 968
FauI	CCCGC	1 cut(s)	56
FblI	GTMKAC	2 cut(s)	324, 810
Fnu4HI	GCNGC	3 cut(s)	66, 84, 932
FokI	GGATG	3 cut(s)	902, 914, 1067
FriOI	GRGCYC	2 cut(s)	8, 976
Fsp4HI	GCNGC	3 cut(s)	66, 84, 932
FspBI	CTAG	2 cut(s)	719, 1010
GlaI	GCGC	1 cut(s)	956
GluI	GCNGC	3 cut(s)	66, 84, 932
GsuI	CTGGAG	1 cut(s)	425
HapII	CCGG	1 cut(s)	488
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	1 cut(s)	957
Hin1II	CATG	2 cut(s)	119, 972
Hin6I	GCGC	1 cut(s)	955
HinP1I	GCGC	1 cut(s)	955
HindIII	AAGCTT	2 cut(s)	434, 1061
HinfI	GANTC	3 cut(s)	158, 390, 824
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	5 cut(s)	140, 200, 763, 841, 973
Hpy166II	GTNNAC	3 cut(s)	290, 325, 811
Hpy188I	TCNGA	7 cut(s)	29, 94, 166, 250, 387, 615, 984
Hpy188III	TCNNGA	8 cut(s)	74, 106, 134, 477, 488, 593, 697, 918
Hpy8I	GTNNAC	3 cut(s)	290, 325, 811
HpyAV	CCTTC	4 cut(s)	4, 248, 559, 698
HpyCH4III	ACNGT	4 cut(s)	241, 496, 590, 775
HpyCH4IV	ACGT	2 cut(s)	262, 989
HpyCH4V	TGCA	6 cut(s)	83, 98, 397, 941, 1042, 1058
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	4 cut(s)	475, 614, 758, 852
HpySE526I	ACGT	2 cut(s)	262, 989
Hsp92II	CATG	2 cut(s)	119, 972
HspAI	GCGC	1 cut(s)	955
Kpn2I	TCCGGA	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	130, 668, 715, 840
LmnI	GCTCC	3 cut(s)	73, 406, 979
Lsp1109I	GCAGC	3 cut(s)	52, 95, 943
LweI	GCATC	4 cut(s)	85, 838, 892, 1045
MaeI	CTAG	2 cut(s)	719, 1010
MaeII	ACGT	2 cut(s)	262, 989
MaeIII	GTNAC	6 cut(s)	188, 379, 399, 553, 790, 855
MalI	GATC	4 cut(s)	132, 670, 717, 842
MboI	GATC	4 cut(s)	130, 668, 715, 840
MboII	GAAGA	9 cut(s)	187, 436, 442, 490, 556, 608, 644, 1133, 1226
MhlI	GDGCHC	3 cut(s)	8, 546, 976
MluCI	AATT	5 cut(s)	172, 279, 336, 943, 1204
MlyI	GAGTC	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	487
MroXI	GAANNNNTTC	3 cut(s)	353, 989, 1073
MseI	TTAA	3 cut(s)	42, 171, 896
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	1002
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	2 cut(s)	234, 959
MvaI	CCWGG	2 cut(s)	234, 959
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	349
NdeII	GATC	4 cut(s)	130, 668, 715, 840
NlaIII	CATG	2 cut(s)	119, 972
NlaIV	GGNNCC	4 cut(s)	78, 975, 1142, 1153
NmuCI	GTSAC	3 cut(s)	188, 399, 790
PdmI	GAANNNNTTC	3 cut(s)	353, 989, 1073
PfeI	GAWTC	2 cut(s)	390, 824
PflFI	GACNNNGTC	1 cut(s)	815
PkrI	GCNGC	3 cut(s)	67, 85, 933
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	232, 957
PspGI	CCWGG	2 cut(s)	232, 957
PspN4I	GGNNCC	4 cut(s)	78, 975, 1142, 1153
PspPI	GGNCC	2 cut(s)	76, 103
PstI	CTGCAG	2 cut(s)	85, 399
PstNI	CAGNNNCTG	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	815
RsaI	GTAC	4 cut(s)	34, 728, 997, 1028
RsaNI	GTAC	4 cut(s)	33, 727, 996, 1027
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	42, 171, 896
SatI	GCNGC	3 cut(s)	66, 84, 932
Sau3AI	GATC	4 cut(s)	130, 668, 715, 840
Sau96I	GGNCC	2 cut(s)	76, 103
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	234, 959
SduI	GDGCHC	3 cut(s)	8, 546, 976
SfaNI	GCATC	4 cut(s)	85, 838, 892, 1045
SfcI	CTRYAG	2 cut(s)	81, 395
SinI	GGWCC	2 cut(s)	76, 103
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	5 cut(s)	172, 279, 336, 943, 1204
SsiI	CCGC	5 cut(s)	37, 49, 686, 1002, 1220
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	2 cut(s)	719, 1010
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	232, 957
TaaI	ACNGT	4 cut(s)	241, 496, 590, 775
TaiI	ACGT	2 cut(s)	265, 992
TaqI	TCGA	2 cut(s)	8, 1107
TasI	AATT	5 cut(s)	172, 279, 336, 943, 1204
TatI	WGTACW	1 cut(s)	1026
TfiI	GAWTC	2 cut(s)	390, 824
Tru1I	TTAA	3 cut(s)	42, 171, 896
Tru9I	TTAA	3 cut(s)	42, 171, 896
TscAI	CASTG	5 cut(s)	105, 246, 408, 917, 1142
TseFI	GTSAC	3 cut(s)	188, 399, 790
TseI	GCWGC	3 cut(s)	65, 83, 931
Tsp45I	GTSAC	3 cut(s)	188, 399, 790
TspDTI	ATGAA	6 cut(s)	202, 267, 438, 717, 1082, 1116
TspGWI	ACGGA	2 cut(s)	70, 1133
TspRI	CASTG	5 cut(s)	105, 246, 408, 917, 1142
Tth111I	GACNNNGTC	1 cut(s)	815
VpaK11BI	GGWCC	2 cut(s)	76, 103
XapI	RAATTY	2 cut(s)	336, 943
XcmI	CCANNNNNNNNNTGG	2 cut(s)	122, 1203
XmiI	GTMKAC	2 cut(s)	324, 810
XmnI	GAANNNNTTC	3 cut(s)	353, 989, 1073
XspI	CTAG	2 cut(s)	719, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.