Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006554

Physical Location & Seq

Genomic Coordinates Reverse (-)

295734 .. 299791

Gene Structure 4058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00450.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCCCTGGACCCTGCAGCTTTTGCTGATGCAGTGGTCCAGATTTATCTGGATAATGCTGGTGATCTGGAACTTATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTCGAGGCAAGTTCTCTTAATGCTTGGGTTGTTTTCACCGGGGGCCGTACACAACCTGGAACAACAAAACCTGATGAGGGGGAGCGCCACCCCTACTCTGTACTAGAGTCTGAGCCTAGACGTGAAGTCATTATACCTTTTGTTATCTACATACAAAAGATTTTGAGGCGGAGGCCATTTCTGATAAAGAATCTTGAAAATGTCATGCGACGTTTCCTTCAGTCATTGGAGCTTTTCGAGGAAAATGAAAGGAAGAAGCTGGCAATTTTCACAGCACTTGCATTCTCTCAGAAGCTATCAGGACTTCCACCGGAGACTGTGTTCCAGCCAATGCTCAAGGATAATCTTGTCGGCAAAGGGCTAGTTCTATCATTTATAACCGAGTTCTTTAAGGAGTATCTGATTGACAATAGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAATCTTCTGGACTTCTTCCCAGCCGCCAAGCGAACTGAGGAGTGTTTCTCTGAGCATTTCACCAAGGAAGGGCTAGTGGCCTTGGTTGAATACAATGAAAAGAAGATTTTTGAGGTGAAGCTTAAGGATATGAAATCTGCTTTGACAACCCAGATAACAGAGGAAACTGATATTGCTGAAGTCATAGAAACTGTGAAGCAGCGTGTTAAAGACGCCAAATTGCCAGATGTTGAGGTTGTGCGTATCCTGTGGGATGTCATTATGGATGCTGTGCAGTGGTCTGGTAAGAATCAGCAACAGAATGCCAATGCAGCTCTTCGCCAGGTGAAGACATGGGCACAACTGTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAACTGATGTACAAAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCAGTGAAATTGTTAGGTCTCTGTATGACCAGGATGTGCTTGCAGAAGACACTATCCTCCATTGGTTCCGCAAAGGAACAAATCCCAAGGGCAGGCAAACATTTGTGAAAGCCCTGGAGCCTTTTGTGAAGTGGCTGGAGGAGGCAGAAGAAGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

419

Amino Acids

48.08

Weight (kDa)

5.45

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_5MP1_2	PF25504	14 - 252	2.4e-82	5MP1/2 HEAT domain
W2	PF02020	338 - 411	3.9e-20	eIF4-gamma/eIF5/eIF2-epsilon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65220 AT5G36230 AT5G36230
fragaria_vesca	FvH4_1g28180 FvH4_6g00450 FvH4_6g00450 FvH4_6g00450
malus_domestica	MD00G1113300.v1.1 MD04G1245300.v1.1 MD12G1086500.v1.1 MD13G1060900.v1.1
prunus_persica	Prupe.6G361900_v2.0.a1
pyrus_communis	pycom04g21600 pycom06g10770 pycom12g23900
rosa_chinensis	RchiOBHm_Chr3g0447821
rosa_laevigata	RLG00000018976 RLG00000025968
rosa_multiflora	Rmu_co8456651.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426020
rosa_rugosa	Rorug02G0606000
rosa_samantha	Rh3AG005500 Rh3BG005100 Rh3CG005400 Rh3DG005600
rosa_wichuraiana	Rw3G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	575
AccII	CGCG	1 cut(s)	37
AciI	CCGC	5 cut(s)	37, 49, 367, 681, 1165
AcuI	CTGAAG	3 cut(s)	147, 401, 855
AcyI	GRCGYC	1 cut(s)	870
AfaI	GTAC	3 cut(s)	247, 300, 1049
AfiI	CCNNNNNNNGG	5 cut(s)	26, 54, 275, 726, 1188
AflII	CTTAAG	1 cut(s)	779
AgsI	TTSAA	4 cut(s)	158, 395, 746, 1006
AhdI	GACNNNNNGTC	1 cut(s)	323
AjiI	CACGTC	1 cut(s)	320
AjnI	CCWGG	5 cut(s)	72, 253, 978, 1125, 1209
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	10, 506, 1119
AoxI	GGCC	3 cut(s)	241, 371, 735
ApeKI	GCWGC	4 cut(s)	65, 83, 856, 968
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
Asp700I	GAANNNNTTC	2 cut(s)	1010, 1094
AspLEI	GCGC	2 cut(s)	70, 285
AspS9I	GGNCC	3 cut(s)	76, 103, 241
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	6 cut(s)	140, 200, 226, 709, 784, 994
AvaII	GGWCC	2 cut(s)	76, 103
BaeGI	GKGCMC	1 cut(s)	997
BanII	GRGCYC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	315, 347
BbsI	GAAGAC	2 cut(s)	992, 1149
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	77, 95, 868, 980
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	5 cut(s)	74, 255, 980, 1127, 1211
BciVI	GTATCC	1 cut(s)	911
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	3 cut(s)	10, 506, 1119
BfaI	CTAG	5 cut(s)	302, 315, 560, 731, 1255
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	2 cut(s)	71, 286
BfrI	CTTAAG	1 cut(s)	779
BfuI	GTATCC	1 cut(s)	911
BisI	GCNGC	5 cut(s)	66, 84, 681, 857, 969
BlpI	GCTNAGC	1 cut(s)	1080
BlsI	GCNGC	5 cut(s)	67, 85, 682, 858, 970
Bme1390I	CCNGG	6 cut(s)	74, 238, 255, 980, 1127, 1211
Bme18I	GGWCC	2 cut(s)	76, 103
BmeRI	GACNNNNNGTC	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	3 cut(s)	76, 103, 241
BmiI	GGNNCC	4 cut(s)	78, 242, 1163, 1215
BmrFI	CCNGG	6 cut(s)	74, 238, 255, 980, 1127, 1211
BmsI	GCATC	4 cut(s)	85, 913, 1050, 1066
BpiI	GAAGAC	2 cut(s)	992, 1149
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 689, 721
BpmI	CTGGAG	2 cut(s)	1232, 1253
Bpu1102I	GCTNAGC	1 cut(s)	1080
BpuEI	CTTGAG	3 cut(s)	163, 518, 1052
BpuMI	CCSGG	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	870
BsaI	GGTCTC	2 cut(s)	10, 1119
BsaJI	CCNNGG	6 cut(s)	72, 237, 720, 738, 1182, 1209
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 54, 275, 726, 1188
BseBI	CCWGG	5 cut(s)	74, 255, 980, 1127, 1211
BseDI	CCNNGG	6 cut(s)	72, 237, 720, 738, 1182, 1209
BseGI	GGATG	4 cut(s)	916, 928, 1081, 1135
BseLI	CCNNNNNNNGG	5 cut(s)	26, 54, 275, 726, 1188
BseMII	CTCAG	4 cut(s)	300, 500, 684, 699
BseRI	GAGGAG	2 cut(s)	710, 1250
BseSI	GKGCMC	1 cut(s)	997
BseXI	GCAGC	4 cut(s)	77, 95, 868, 980
BseYI	CCCAGC	1 cut(s)	676
BsgI	GTGCAG	2 cut(s)	950, 1000
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	243, 373, 737
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	237, 509
BslI	CCNNNNNNNGG	5 cut(s)	26, 54, 275, 726, 1188
BsmAI	GTCTC	3 cut(s)	10, 506, 1119
BsmI	GAATGC	3 cut(s)	479, 964, 1012
BsnI	GGCC	3 cut(s)	243, 373, 737
Bso31I	GGTCTC	2 cut(s)	10, 1119
Bsp1286I	GDGCHC	2 cut(s)	8, 997
Bsp1407I	TGTACA	1 cut(s)	1047
Bsp143I	GATC	1 cut(s)	130
Bsp1720I	GCTNAGC	1 cut(s)	1080
BspACI	CCGC	5 cut(s)	37, 49, 367, 681, 1165
BspANI	GGCC	3 cut(s)	243, 373, 737
BspCNI	CTCAG	4 cut(s)	301, 499, 685, 700
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	4 cut(s)	78, 242, 1163, 1215
BspMAI	CTGCAG	1 cut(s)	85
BspQI	GCTCTTC	1 cut(s)	978
BspTI	CTTAAG	1 cut(s)	779
BspTNI	GGTCTC	2 cut(s)	10, 1119
BsrGI	TGTACA	1 cut(s)	1047
BssECI	CCNNGG	6 cut(s)	72, 237, 720, 738, 1182, 1209
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	870
BssT1I	CCWWGG	3 cut(s)	720, 738, 1182
Bst2UI	CCWGG	5 cut(s)	74, 255, 980, 1127, 1211
Bst4CI	ACNGT	4 cut(s)	188, 517, 850, 1002
Bst6I	CTCTTC	2 cut(s)	978, 1242
BstACI	GRCGYC	1 cut(s)	870
BstAFI	CTTAAG	1 cut(s)	779
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	1047
BstC8I	GCNNGC	4 cut(s)	35, 459, 1137, 1190
BstDEI	CTNAG	5 cut(s)	309, 486, 693, 708, 1080
BstF5I	GGATG	4 cut(s)	916, 928, 1081, 1135
BstFNI	CGCG	1 cut(s)	37
BstH2I	RGCGCY	2 cut(s)	71, 286
BstHHI	GCGC	2 cut(s)	70, 285
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	3 cut(s)	10, 506, 1119
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 968, 1090
BstNI	CCWGG	5 cut(s)	74, 255, 980, 1127, 1211
BstSCI	CCNGG	6 cut(s)	72, 236, 253, 978, 1125, 1209
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	997
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	4 cut(s)	77, 95, 868, 980
BstV2I	GAAGAC	2 cut(s)	992, 1149
BsuI	GTATCC	1 cut(s)	911
BsuRI	GGCC	3 cut(s)	243, 373, 737
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	4 cut(s)	916, 928, 1081, 1135
BtsI	GCAGTG	3 cut(s)	105, 938, 1070
BtsIMutI	CAGTG	4 cut(s)	105, 938, 1070, 1105
Cac8I	GCNNGC	4 cut(s)	35, 459, 1137, 1190
CfoI	GCGC	2 cut(s)	70, 285
Cfr13I	GGNCC	3 cut(s)	76, 103, 241
CseI	GACGC	1 cut(s)	878
Csp6I	GTAC	3 cut(s)	246, 299, 1048
CviAII	CATG	2 cut(s)	403, 990
CviQI	GTAC	3 cut(s)	246, 299, 1048
DdeI	CTNAG	5 cut(s)	309, 486, 693, 708, 1080
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DriI	GACNNNNNGTC	1 cut(s)	323
Eam1104I	CTCTTC	2 cut(s)	978, 1242
Eam1105I	GACNNNNNGTC	1 cut(s)	323
EarI	CTCTTC	2 cut(s)	978, 1242
EciI	GGCGGA	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	720, 738, 1182
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	2 cut(s)	10, 1119
Eco47I	GGWCC	2 cut(s)	76, 103
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	3 cut(s)	147, 401, 855
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	5 cut(s)	72, 253, 978, 1125, 1209
EcoT14I	CCWWGG	3 cut(s)	720, 738, 1182
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	720, 738, 1182
FaeI	CATG	2 cut(s)	406, 993
FatI	CATG	2 cut(s)	402, 989
FauI	CCCGC	1 cut(s)	56
Fnu4HI	GCNGC	5 cut(s)	66, 84, 681, 857, 969
FokI	GGATG	4 cut(s)	923, 935, 1088, 1142
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	66, 84, 681, 857, 969
FspBI	CTAG	5 cut(s)	302, 315, 560, 731, 1255
GlaI	GCGC	2 cut(s)	69, 284
GluI	GCNGC	5 cut(s)	66, 84, 681, 857, 969
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	2 cut(s)	1232, 1253
HaeII	RGCGCY	2 cut(s)	71, 286
HaeIII	GGCC	3 cut(s)	243, 373, 737
HapII	CCGG	2 cut(s)	237, 509
HgaI	GACGC	1 cut(s)	878
HhaI	GCGC	2 cut(s)	70, 285
Hin1I	GRCGYC	1 cut(s)	870
Hin1II	CATG	2 cut(s)	406, 993
Hin6I	GCGC	2 cut(s)	68, 283
HinP1I	GCGC	2 cut(s)	68, 283
HindIII	AAGCTT	2 cut(s)	776, 1028
HinfI	GANTC	5 cut(s)	158, 305, 388, 631, 946
HpaII	CCGG	2 cut(s)	237, 509
HphI	GGTGA	6 cut(s)	140, 200, 226, 709, 784, 994
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	8 cut(s)	166, 310, 381, 489, 600, 636, 709, 1059
Hpy188III	TCNNGA	7 cut(s)	106, 116, 134, 180, 392, 498, 665
Hpy8I	GTNNAC	1 cut(s)	248
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	4 cut(s)	4, 425, 719, 1021
HpyCH4III	ACNGT	4 cut(s)	188, 517, 850, 1002
HpyCH4IV	ACGT	2 cut(s)	319, 409
HpyCH4V	TGCA	9 cut(s)	65, 83, 98, 479, 931, 968, 1017, 1063, 1139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 968, 1090
HpyF3I	CTNAG	5 cut(s)	309, 486, 693, 708, 1080
HpySE526I	ACGT	2 cut(s)	319, 409
Hsp92I	GRCGYC	1 cut(s)	870
Hsp92II	CATG	2 cut(s)	406, 993
HspAI	GCGC	2 cut(s)	68, 283
Kzo9I	GATC	1 cut(s)	130
LguI	GCTCTTC	1 cut(s)	978
LmnI	GCTCC	3 cut(s)	280, 427, 1213
Lsp1109I	GCAGC	4 cut(s)	77, 95, 868, 980
LweI	GCATC	4 cut(s)	85, 913, 1050, 1066
MaeI	CTAG	5 cut(s)	302, 315, 560, 731, 1255
MaeII	ACGT	2 cut(s)	319, 409
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	9 cut(s)	153, 463, 653, 664, 772, 965, 997, 1154, 1256
MhlI	GDGCHC	2 cut(s)	8, 997
MluCI	AATT	3 cut(s)	462, 875, 1104
MlyI	GAGTC	1 cut(s)	314
MroXI	GAANNNNTTC	2 cut(s)	1010, 1094
MseI	TTAA	6 cut(s)	42, 171, 216, 588, 780, 864
MspCI	CTTAAG	1 cut(s)	779
MspI	CCGG	2 cut(s)	237, 509
MspR9I	CCNGG	6 cut(s)	74, 238, 255, 980, 1127, 1211
Mva1269I	GAATGC	3 cut(s)	479, 964, 1012
MvaI	CCWGG	5 cut(s)	74, 255, 980, 1127, 1211
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	89, 968, 1090
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	406, 993
NlaIV	GGNNCC	4 cut(s)	78, 242, 1163, 1215
NmuCI	GTSAC	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	978
PctI	GAATGC	3 cut(s)	479, 964, 1012
PdmI	GAANNNNTTC	2 cut(s)	1010, 1094
PfeI	GAWTC	4 cut(s)	158, 388, 631, 946
PkrI	GCNGC	5 cut(s)	67, 85, 682, 858, 970
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	575
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	5 cut(s)	72, 253, 978, 1125, 1209
PspFI	CCCAGC	1 cut(s)	676
PspGI	CCWGG	5 cut(s)	72, 253, 978, 1125, 1209
PspN4I	GGNNCC	4 cut(s)	78, 242, 1163, 1215
PspPI	GGNCC	3 cut(s)	76, 103, 241
PstI	CTGCAG	1 cut(s)	85
RsaI	GTAC	3 cut(s)	247, 300, 1049
RsaNI	GTAC	3 cut(s)	246, 299, 1048
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	978
SaqAI	TTAA	6 cut(s)	42, 171, 216, 588, 780, 864
SatI	GCNGC	5 cut(s)	66, 84, 681, 857, 969
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	3 cut(s)	76, 103, 241
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	6 cut(s)	74, 238, 255, 980, 1127, 1211
SduI	GDGCHC	2 cut(s)	8, 997
SfaNI	GCATC	4 cut(s)	85, 913, 1050, 1066
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	76, 103
SmlI	CTYRAG	4 cut(s)	178, 533, 779, 1031
SmoI	CTYRAG	4 cut(s)	178, 533, 779, 1031
Sse9I	AATT	3 cut(s)	462, 875, 1104
SsiI	CCGC	5 cut(s)	37, 49, 367, 681, 1165
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	5 cut(s)	302, 315, 560, 731, 1255
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	6 cut(s)	72, 236, 253, 978, 1125, 1209
StyI	CCWWGG	3 cut(s)	720, 738, 1182
TaaI	ACNGT	4 cut(s)	188, 517, 850, 1002
TaiI	ACGT	2 cut(s)	322, 412
TaqI	TCGA	4 cut(s)	8, 201, 435, 629
TasI	AATT	3 cut(s)	462, 875, 1104
TatI	WGTACW	2 cut(s)	298, 1047
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	4 cut(s)	158, 388, 631, 946
Tru1I	TTAA	6 cut(s)	42, 171, 216, 588, 780, 864
Tru9I	TTAA	6 cut(s)	42, 171, 216, 588, 780, 864
TscAI	CASTG	4 cut(s)	105, 938, 1070, 1105
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	4 cut(s)	65, 83, 856, 968
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	4 cut(s)	459, 768, 803, 1103
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	4 cut(s)	105, 938, 1070, 1105
Vha464I	CTTAAG	1 cut(s)	779
VpaK11BI	GGWCC	2 cut(s)	76, 103
XmnI	GAANNNNTTC	2 cut(s)	1010, 1094
XspI	CTAG	5 cut(s)	302, 315, 560, 731, 1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.