Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006554

Physical Location & Seq

Genomic Coordinates Reverse (-)

399125 .. 401572

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTATATCTTCTTATCCCTGACTTGCATGTCATGTTTTTCGTTTTTCTTTATGTACAGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCTTTTGCGGATGCAGTGGTCCAGATTTATCTGGATAATGCTGGTGATCTGGAACTTATTGCCAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTTGTTTTCACTGGGGGCCGTACACAACCTGGAACAACAAAACCTGATGAGGGGGAGCGCCACCCTTACTCTGTACTAGAGTCTGAGCCTAGACGTGAAGTCATTATACCATCTGTTATCTACATACAAAAGATTTTGAGGCGGAGGCCATTTCTGATAAAGAATCTCGAAAATGTCATGCGACGTTTCCTTCAGTCATTGGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTGGCAATTTTCACAGCACTTGCATTCTCTCAGAAGCTATCAGGACTTCCACCGGAAACGGTGTTCCAGCCAATGCTCAAGGATAATCTTGTTGGCAAAGGGCTAGTTCTATCGTTTATAACTGAGTTCTTCAAGGAGTATCTGATTGACAATAGCCTTGATGATTTGATTTCGATTCTGAAACGGGGTAAAGTGGAGGATAATCTTCTGGACTTCTTCCCAGCCGCAAAGCGAACTGAGGAGAGTTTCTCTGAGCATTTCACCAAGGAAGGGCTAGTGTCCTTGGTTGAATACAATGAAAAGAAGATTTTTGAGGTGAAGCTTAAAGATATGAAATCTGCTTTGACAACCCAGATAACAGAGGAAACTGATATATCTGAAGTCATAGAAACTGTGAAGCAGCGCGTTAAAGATGCCAAATTGCCAGATGTTGAGGTTGTGCGTATCCTGTGGGATGTTATTATGGATGCTGTGCAGTGGTCTGGTAAGAATCAGCAACAGAATGCCAATGCAGCTCTTCGCCAGGTGAAAACATGGGCACAACTGTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAGCTGATATACAAAGTTCAGATGCAGTGCTATGAGGATGCTAAGCTGATGAAGCTGTTCTCTGAAATTGTTAGGTCGCTGTATGAGCAGGATGTGCTTGCAGAAGACACTATCCTCCATTGGTTCCGCAAAGGAACAAATCCCAAGGGCAGGCAAACATTTGTGAAAGCTCTGGAGCCTTTTGTGAAGTGGCTGGAGGAGGCAGAAGAAGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

421

Amino Acids

48.68

Weight (kDa)

5.38

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_5MP1_2	PF25504	24 - 262	7.3e-82	5MP1/2 HEAT domain
W2	PF02020	348 - 421	1.4e-19	eIF4-gamma/eIF5/eIF2-epsilon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65220 AT5G36230 AT5G36230
fragaria_vesca	FvH4_1g28180 FvH4_6g00450 FvH4_6g00450 FvH4_6g00450
malus_domestica	MD00G1113300.v1.1 MD04G1245300.v1.1 MD12G1086500.v1.1 MD13G1060900.v1.1
prunus_persica	Prupe.6G361900_v2.0.a1
pyrus_communis	pycom04g21600 pycom06g10770 pycom12g23900
rosa_chinensis	RchiOBHm_Chr3g0447821
rosa_laevigata	RLG00000018976 RLG00000025968
rosa_multiflora	Rmu_co8456651.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426020
rosa_rugosa	Rorug02G0606000
rosa_samantha	Rh3AG005500 Rh3BG005100 Rh3CG005400 Rh3DG005600
rosa_wichuraiana	Rw3G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AasI	GACNNNNNNGTC	1 cut(s)	28
AccII	CGCG	2 cut(s)	67, 870
AciI	CCGC	7 cut(s)	67, 79, 101, 122, 376, 690, 1174
AcuI	CTGAAG	3 cut(s)	177, 410, 864
AfaI	GTAC	3 cut(s)	56, 256, 309
AfiI	CCNNNNNNNGG	4 cut(s)	84, 284, 735, 1197
AgsI	TTSAA	4 cut(s)	188, 598, 755, 1015
AhdI	GACNNNNNGTC	1 cut(s)	332
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	262, 987
AloI	GAACNNNNNNTCC	2 cut(s)	512, 544
AoxI	GGCC	2 cut(s)	250, 380
ApeKI	GCWGC	4 cut(s)	95, 113, 865, 977
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp700I	GAANNNNTTC	2 cut(s)	1019, 1103
AspLEI	GCGC	3 cut(s)	100, 294, 870
AspS9I	GGNCC	3 cut(s)	106, 133, 250
AsuHPI	GGTGA	5 cut(s)	170, 230, 718, 793, 1003
AvaII	GGWCC	2 cut(s)	106, 133
BaeGI	GKGCMC	1 cut(s)	1006
BarI	GAAGNNNNNNTAC	2 cut(s)	324, 356
BbsI	GAAGAC	1 cut(s)	1158
BbvI	GCAGC	4 cut(s)	107, 125, 877, 989
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	2 cut(s)	264, 989
BciVI	GTATCC	1 cut(s)	920
BfaI	CTAG	4 cut(s)	311, 324, 569, 740
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	2 cut(s)	101, 295
BfuI	GTATCC	1 cut(s)	920
BisI	GCNGC	6 cut(s)	96, 101, 114, 690, 866, 978
BlpI	GCTNAGC	1 cut(s)	1089
BlsI	GCNGC	6 cut(s)	97, 102, 115, 691, 867, 979
Bme1390I	CCNGG	2 cut(s)	264, 989
Bme18I	GGWCC	2 cut(s)	106, 133
BmeRI	GACNNNNNGTC	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	3 cut(s)	106, 133, 250
BmiI	GGNNCC	4 cut(s)	108, 251, 1172, 1224
BmrFI	CCNGG	2 cut(s)	264, 989
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	5 cut(s)	115, 868, 922, 1059, 1075
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	1158
BplI	GAGNNNNNCTC	2 cut(s)	698, 730
BpmI	CTGGAG	3 cut(s)	1067, 1241, 1262
Bpu1102I	GCTNAGC	1 cut(s)	1089
BpuEI	CTTGAG	3 cut(s)	193, 527, 1061
BsaJI	CCNNGG	3 cut(s)	729, 747, 1191
BsaWI	WCCGGW	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 284, 735, 1197
Bse1I	ACTGG	1 cut(s)	250
BseBI	CCWGG	2 cut(s)	264, 989
BseDI	CCNNGG	3 cut(s)	729, 747, 1191
BseGI	GGATG	5 cut(s)	130, 925, 937, 1090, 1144
BseLI	CCNNNNNNNGG	4 cut(s)	84, 284, 735, 1197
BseMII	CTCAG	5 cut(s)	309, 509, 579, 693, 708
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	2 cut(s)	719, 1259
BseSI	GKGCMC	1 cut(s)	1006
BseXI	GCAGC	4 cut(s)	107, 125, 877, 989
BseYI	CCCAGC	1 cut(s)	685
BsgI	GTGCAG	2 cut(s)	959, 1009
Bsh1236I	CGCG	2 cut(s)	67, 870
BshFI	GGCC	2 cut(s)	252, 382
BsiSI	CCGG	1 cut(s)	518
BslI	CCNNNNNNNGG	4 cut(s)	84, 284, 735, 1197
BsmI	GAATGC	3 cut(s)	488, 973, 1021
BsnI	GGCC	2 cut(s)	252, 382
Bsp1286I	GDGCHC	1 cut(s)	1006
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	160
Bsp1720I	GCTNAGC	1 cut(s)	1089
BspACI	CCGC	7 cut(s)	67, 79, 101, 122, 376, 690, 1174
BspANI	GGCC	2 cut(s)	252, 382
BspCNI	CTCAG	5 cut(s)	310, 508, 580, 694, 709
BspFNI	CGCG	2 cut(s)	67, 870
BspLI	GGNNCC	4 cut(s)	108, 251, 1172, 1224
BspMAI	CTGCAG	1 cut(s)	115
BspQI	GCTCTTC	1 cut(s)	987
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	729, 747, 1191
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	3 cut(s)	729, 747, 1191
Bst2UI	CCWGG	2 cut(s)	264, 989
Bst4CI	ACNGT	5 cut(s)	59, 218, 526, 859, 1011
Bst6I	CTCTTC	2 cut(s)	987, 1251
BstAPI	GCANNNNNTGC	2 cut(s)	119, 1141
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	4 cut(s)	65, 468, 1146, 1199
BstDEI	CTNAG	6 cut(s)	318, 495, 588, 702, 717, 1089
BstF5I	GGATG	5 cut(s)	130, 925, 937, 1090, 1144
BstFNI	CGCG	2 cut(s)	67, 870
BstH2I	RGCGCY	2 cut(s)	101, 295
BstHHI	GCGC	3 cut(s)	100, 294, 870
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 977, 1099, 1132, 1141
BstNI	CCWGG	2 cut(s)	264, 989
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	262, 987
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	1006
BstUI	CGCG	2 cut(s)	67, 870
BstV1I	GCAGC	4 cut(s)	107, 125, 877, 989
BstV2I	GAAGAC	1 cut(s)	1158
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	2 cut(s)	252, 382
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	5 cut(s)	130, 925, 937, 1090, 1144
BtsI	GCAGTG	3 cut(s)	135, 947, 1079
BtsIMutI	CAGTG	5 cut(s)	64, 135, 243, 947, 1079
Cac8I	GCNNGC	4 cut(s)	65, 468, 1146, 1199
CfoI	GCGC	3 cut(s)	100, 294, 870
Cfr13I	GGNCC	3 cut(s)	106, 133, 250
Csp6I	GTAC	3 cut(s)	55, 255, 308
CviAII	CATG	4 cut(s)	28, 33, 412, 999
CviQI	GTAC	3 cut(s)	55, 255, 308
DdeI	CTNAG	6 cut(s)	318, 495, 588, 702, 717, 1089
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DrdI	GACNNNNNNGTC	1 cut(s)	28
DriI	GACNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	987, 1251
Eam1105I	GACNNNNNGTC	1 cut(s)	332
EarI	CTCTTC	2 cut(s)	987, 1251
EciI	GGCGGA	1 cut(s)	391
Eco130I	CCWWGG	3 cut(s)	729, 747, 1191
Eco47I	GGWCC	2 cut(s)	106, 133
Eco57I	CTGAAG	3 cut(s)	177, 410, 864
EcoRII	CCWGG	2 cut(s)	262, 987
EcoT14I	CCWWGG	3 cut(s)	729, 747, 1191
ErhI	CCWWGG	3 cut(s)	729, 747, 1191
FaeI	CATG	4 cut(s)	31, 36, 415, 1002
FatI	CATG	4 cut(s)	27, 32, 411, 998
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	6 cut(s)	96, 101, 114, 690, 866, 978
FokI	GGATG	5 cut(s)	137, 932, 944, 1097, 1151
Fsp4HI	GCNGC	6 cut(s)	96, 101, 114, 690, 866, 978
FspBI	CTAG	4 cut(s)	311, 324, 569, 740
GlaI	GCGC	3 cut(s)	99, 293, 869
GluI	GCNGC	6 cut(s)	96, 101, 114, 690, 866, 978
GsaI	CCCAGC	1 cut(s)	689
GsuI	CTGGAG	3 cut(s)	1067, 1241, 1262
HaeII	RGCGCY	2 cut(s)	101, 295
HaeIII	GGCC	2 cut(s)	252, 382
HapII	CCGG	1 cut(s)	518
HhaI	GCGC	3 cut(s)	100, 294, 870
Hin1II	CATG	4 cut(s)	31, 36, 415, 1002
Hin6I	GCGC	3 cut(s)	98, 292, 868
HinP1I	GCGC	3 cut(s)	98, 292, 868
HindIII	AAGCTT	2 cut(s)	785, 1037
HinfI	GANTC	5 cut(s)	188, 314, 397, 640, 955
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	5 cut(s)	170, 230, 718, 793, 1003
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188III	TCNNGA	8 cut(s)	136, 146, 164, 210, 401, 507, 674, 1220
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	3 cut(s)	434, 728, 1030
HpyCH4III	ACNGT	5 cut(s)	59, 218, 526, 859, 1011
HpyCH4IV	ACGT	2 cut(s)	328, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 977, 1099, 1132, 1141
HpyF3I	CTNAG	6 cut(s)	318, 495, 588, 702, 717, 1089
HpySE526I	ACGT	2 cut(s)	328, 418
Hsp92II	CATG	4 cut(s)	31, 36, 415, 1002
HspAI	GCGC	3 cut(s)	98, 292, 868
Kzo9I	GATC	1 cut(s)	160
LguI	GCTCTTC	1 cut(s)	987
LmnI	GCTCC	4 cut(s)	289, 436, 1048, 1222
Lsp1109I	GCAGC	4 cut(s)	107, 125, 877, 989
LweI	GCATC	5 cut(s)	115, 868, 922, 1059, 1075
MaeI	CTAG	4 cut(s)	311, 324, 569, 740
MaeII	ACGT	2 cut(s)	328, 418
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	9 cut(s)	183, 472, 586, 662, 673, 781, 974, 1163, 1265
MhlI	GDGCHC	1 cut(s)	1006
MluCI	AATT	3 cut(s)	471, 884, 1113
MlyI	GAGTC	1 cut(s)	323
MroXI	GAANNNNTTC	2 cut(s)	1019, 1103
MseI	TTAA	4 cut(s)	72, 201, 789, 873
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	2 cut(s)	264, 989
Mva1269I	GAATGC	3 cut(s)	488, 973, 1021
MvaI	CCWGG	2 cut(s)	264, 989
MvnI	CGCG	2 cut(s)	67, 870
MwoI	GCNNNNNNNGC	5 cut(s)	119, 977, 1099, 1132, 1141
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	4 cut(s)	31, 36, 415, 1002
NlaIV	GGNNCC	4 cut(s)	108, 251, 1172, 1224
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	987
PctI	GAATGC	3 cut(s)	488, 973, 1021
PdmI	GAANNNNTTC	2 cut(s)	1019, 1103
PfeI	GAWTC	4 cut(s)	188, 397, 640, 955
PkrI	GCNGC	6 cut(s)	97, 102, 115, 691, 867, 979
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PsiI	TTATAA	1 cut(s)	584
Psp6I	CCWGG	2 cut(s)	262, 987
PspFI	CCCAGC	1 cut(s)	685
PspGI	CCWGG	2 cut(s)	262, 987
PspN4I	GGNNCC	4 cut(s)	108, 251, 1172, 1224
PspPI	GGNCC	3 cut(s)	106, 133, 250
PstI	CTGCAG	1 cut(s)	115
RsaI	GTAC	3 cut(s)	56, 256, 309
RsaNI	GTAC	3 cut(s)	55, 255, 308
SapI	GCTCTTC	1 cut(s)	987
SaqAI	TTAA	4 cut(s)	72, 201, 789, 873
SatI	GCNGC	6 cut(s)	96, 101, 114, 690, 866, 978
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	3 cut(s)	106, 133, 250
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	264, 989
SduI	GDGCHC	1 cut(s)	1006
SfaNI	GCATC	5 cut(s)	115, 868, 922, 1059, 1075
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	2 cut(s)	106, 133
SmlI	CTYRAG	3 cut(s)	208, 542, 1040
SmoI	CTYRAG	3 cut(s)	208, 542, 1040
Sse9I	AATT	3 cut(s)	471, 884, 1113
SsiI	CCGC	7 cut(s)	67, 79, 101, 122, 376, 690, 1174
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	4 cut(s)	311, 324, 569, 740
StyD4I	CCNGG	2 cut(s)	262, 987
StyI	CCWWGG	3 cut(s)	729, 747, 1191
TaaI	ACNGT	5 cut(s)	59, 218, 526, 859, 1011
TaiI	ACGT	2 cut(s)	331, 421
TaqI	TCGA	2 cut(s)	402, 638
TasI	AATT	3 cut(s)	471, 884, 1113
TatI	WGTACW	2 cut(s)	54, 307
TauI	GCSGC	2 cut(s)	103, 692
TfiI	GAWTC	4 cut(s)	188, 397, 640, 955
Tru1I	TTAA	4 cut(s)	72, 201, 789, 873
Tru9I	TTAA	4 cut(s)	72, 201, 789, 873
TscAI	CASTG	5 cut(s)	64, 135, 250, 947, 1079
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	4 cut(s)	95, 113, 865, 977
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	4 cut(s)	468, 777, 812, 1112
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	5 cut(s)	64, 135, 250, 947, 1079
VpaK11BI	GGWCC	2 cut(s)	106, 133
XceI	RCATGY	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	1019, 1103
XspI	CTAG	4 cut(s)	311, 324, 569, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.