Rmu_co8456651.1_g000001

Basic leucine zipper and W2 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8456651.1
OG0006554
Physical Location & Seq
Forward (+)
10 .. 1715
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8456651.1_g000001.1.cds

Sequence Viewer

Length: 855 bp
atgcgacgtttccttcagtcattggagctttttgaggaaaatgaaaggaagaagctggcaattttcacagcacttgcattctctcagaagctatcaggacttccaccggaaacggtgttccagccaatgctcaaggataatcttgttggcaaagggctagttctatcgtttataactgagttcttcaaggagtatctgattgacaatagccttgatgatttgatttcgattctgaaacggggtaaagtggaggataatcttctggacttcttcccagccgcaaagcgaactgaggagagtttctctgagcatttcaccaaggaagggctagtgtccttggttgaatacaatgaaaagaagatttttgaggtgaagcttaaagatatgaaatctgctttgacaacccagataacagaggaaactgatatatctgaagtcatagaaactgtgaagcagcgcgttaaagatgccaaattgccagatgttgaggttgtgcgtatcctgtgggatgttattatggatgctgtgcagtggtctggtaagaatcagcaacagaatgccaacgcagctcttcgccaggtgaaaacatgggcacaactgttgaatgccttctgcaccaatgggaagcttgagctggagctgatatacaaagttcagatgcagtgctatgaggatgctaagctgatgaagctgttctctgaaattgttaggtctctgtatgaccaggatgtgcttgcagaagacactatcctccattggttccgcaaaggaacaaatcccaagggcaggcaaacatttgtgaaagctctggagccttttgtgaagtggctggaggaggcagaagaagaggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
W2

Protein Analysis

284

Amino Acids

33.02

Weight (kDa)

5.12

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
AccII CGCG 1 cut(s) 459
AciI CCGC 2 cut(s) 279, 763
AcuI CTGAAG 1 cut(s) 453
AfiI CCNNNNNNNGG 2 cut(s) 324, 786
AgsI TTSAA 3 cut(s) 187, 344, 604
AjnI CCWGG 2 cut(s) 576, 723
AloI GAACNNNNNNTCC 2 cut(s) 101, 133
Alw26I GTCTC 1 cut(s) 717
ApeKI GCWGC 2 cut(s) 454, 566
Asp700I GAANNNNTTC 2 cut(s) 608, 692
AspLEI GCGC 1 cut(s) 459
AsuHPI GGTGA 3 cut(s) 307, 382, 592
BaeGI GKGCMC 1 cut(s) 595
BbsI GAAGAC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 466, 578
BciT130I CCWGG 2 cut(s) 578, 725
BciVI GTATCC 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 717
BfaI CTAG 2 cut(s) 158, 329
BfuI GTATCC 1 cut(s) 509
BisI GCNGC 3 cut(s) 279, 455, 567
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 3 cut(s) 280, 456, 568
Bme1390I CCNGG 2 cut(s) 578, 725
BmiI GGNNCC 2 cut(s) 761, 813
BmrFI CCNGG 2 cut(s) 578, 725
BmsI GCATC 4 cut(s) 457, 511, 648, 664
BpiI GAAGAC 1 cut(s) 747
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 3 cut(s) 656, 830, 851
Bpu1102I GCTNAGC 1 cut(s) 678
BpuEI CTTGAG 2 cut(s) 116, 650
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 3 cut(s) 318, 336, 780
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 786
BseBI CCWGG 2 cut(s) 578, 725
BseDI CCNNGG 3 cut(s) 318, 336, 780
BseGI GGATG 4 cut(s) 514, 526, 679, 733
BseLI CCNNNNNNNGG 2 cut(s) 324, 786
BseMII CTCAG 4 cut(s) 98, 168, 282, 297
BseRI GAGGAG 2 cut(s) 308, 848
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 2 cut(s) 466, 578
BseYI CCCAGC 1 cut(s) 274
BsgI GTGCAG 2 cut(s) 548, 598
Bsh1236I CGCG 1 cut(s) 459
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 324, 786
BsmAI GTCTC 1 cut(s) 717
BsmI GAATGC 3 cut(s) 77, 562, 610
Bso31I GGTCTC 1 cut(s) 717
Bsp1286I GDGCHC 1 cut(s) 595
Bsp1720I GCTNAGC 1 cut(s) 678
BspACI CCGC 2 cut(s) 279, 763
BspCNI CTCAG 4 cut(s) 97, 169, 283, 298
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 761, 813
BspQI GCTCTTC 1 cut(s) 576
BspTNI GGTCTC 1 cut(s) 717
BssECI CCNNGG 3 cut(s) 318, 336, 780
BssT1I CCWWGG 3 cut(s) 318, 336, 780
Bst2UI CCWGG 2 cut(s) 578, 725
Bst4CI ACNGT 3 cut(s) 115, 448, 600
Bst6I CTCTTC 2 cut(s) 576, 840
BstC8I GCNNGC 3 cut(s) 57, 735, 788
BstDEI CTNAG 5 cut(s) 84, 177, 291, 306, 678
BstF5I GGATG 4 cut(s) 514, 526, 679, 733
BstFNI CGCG 1 cut(s) 459
BstHHI GCGC 1 cut(s) 459
BstMAI GTCTC 1 cut(s) 717
BstMWI GCNNNNNNNGC 2 cut(s) 566, 688
BstNI CCWGG 2 cut(s) 578, 725
BstSCI CCNGG 2 cut(s) 576, 723
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 1 cut(s) 459
BstV1I GCAGC 2 cut(s) 466, 578
BstV2I GAAGAC 1 cut(s) 747
BsuI GTATCC 1 cut(s) 509
BtsCI GGATG 4 cut(s) 514, 526, 679, 733
BtsI GCAGTG 2 cut(s) 536, 668
BtsIMutI CAGTG 2 cut(s) 536, 668
Cac8I GCNNGC 3 cut(s) 57, 735, 788
CfoI GCGC 1 cut(s) 459
CviAII CATG 1 cut(s) 588
DdeI CTNAG 5 cut(s) 84, 177, 291, 306, 678
Eam1104I CTCTTC 2 cut(s) 576, 840
EarI CTCTTC 2 cut(s) 576, 840
Eco130I CCWWGG 3 cut(s) 318, 336, 780
Eco31I GGTCTC 1 cut(s) 717
Eco57I CTGAAG 1 cut(s) 453
EcoRII CCWGG 2 cut(s) 576, 723
EcoT14I CCWWGG 3 cut(s) 318, 336, 780
ErhI CCWWGG 3 cut(s) 318, 336, 780
FaeI CATG 1 cut(s) 591
FaiI YATR 9 cut(s) 173, 386, 428, 440, 518, 589, 646, 669, 720
FatI CATG 1 cut(s) 587
Fnu4HI GCNGC 3 cut(s) 279, 455, 567
FokI GGATG 4 cut(s) 521, 533, 686, 740
Fsp4HI GCNGC 3 cut(s) 279, 455, 567
FspBI CTAG 2 cut(s) 158, 329
GlaI GCGC 1 cut(s) 458
GluI GCNGC 3 cut(s) 279, 455, 567
GsaI CCCAGC 1 cut(s) 278
GsuI CTGGAG 3 cut(s) 656, 830, 851
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 459
Hin1II CATG 1 cut(s) 591
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HindIII AAGCTT 2 cut(s) 374, 626
HinfI GANTC 2 cut(s) 229, 544
HpaII CCGG 1 cut(s) 107
HphI GGTGA 3 cut(s) 307, 382, 592
Hpy188I TCNGA 7 cut(s) 87, 198, 234, 307, 433, 657, 700
Hpy188III TCNNGA 3 cut(s) 96, 263, 809
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 3 cut(s) 23, 317, 619
HpyCH4III ACNGT 3 cut(s) 115, 448, 600
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 5 cut(s) 77, 529, 615, 661, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 566, 688
HpyF3I CTNAG 5 cut(s) 84, 177, 291, 306, 678
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 1 cut(s) 591
HspAI GCGC 1 cut(s) 457
LguI GCTCTTC 1 cut(s) 576
LmnI GCTCC 3 cut(s) 25, 637, 811
Lsp1109I GCAGC 2 cut(s) 466, 578
LweI GCATC 4 cut(s) 457, 511, 648, 664
MaeI CTAG 2 cut(s) 158, 329
MaeII ACGT 1 cut(s) 7
MboII GAAGA 8 cut(s) 61, 175, 251, 262, 370, 563, 752, 854
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 3 cut(s) 60, 473, 702
MroXI GAANNNNTTC 2 cut(s) 608, 692
MseI TTAA 2 cut(s) 378, 462
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 2 cut(s) 578, 725
Mva1269I GAATGC 3 cut(s) 77, 562, 610
MvaI CCWGG 2 cut(s) 578, 725
MvnI CGCG 1 cut(s) 459
MwoI GCNNNNNNNGC 2 cut(s) 566, 688
NlaIII CATG 1 cut(s) 591
NlaIV GGNNCC 2 cut(s) 761, 813
PciSI GCTCTTC 1 cut(s) 576
PctI GAATGC 3 cut(s) 77, 562, 610
PdmI GAANNNNTTC 2 cut(s) 608, 692
PfeI GAWTC 2 cut(s) 229, 544
PkrI GCNGC 3 cut(s) 280, 456, 568
PsiI TTATAA 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 576, 723
PspFI CCCAGC 1 cut(s) 274
PspGI CCWGG 2 cut(s) 576, 723
PspN4I GGNNCC 2 cut(s) 761, 813
SapI GCTCTTC 1 cut(s) 576
SaqAI TTAA 2 cut(s) 378, 462
SatI GCNGC 3 cut(s) 279, 455, 567
ScrFI CCNGG 2 cut(s) 578, 725
SduI GDGCHC 1 cut(s) 595
SfaNI GCATC 4 cut(s) 457, 511, 648, 664
SmlI CTYRAG 2 cut(s) 131, 629
SmoI CTYRAG 2 cut(s) 131, 629
Sse9I AATT 3 cut(s) 60, 473, 702
SsiI CCGC 2 cut(s) 279, 763
SspMI CTAG 2 cut(s) 158, 329
StyD4I CCNGG 2 cut(s) 576, 723
StyI CCWWGG 3 cut(s) 318, 336, 780
TaaI ACNGT 3 cut(s) 115, 448, 600
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 227
TasI AATT 3 cut(s) 60, 473, 702
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 2 cut(s) 229, 544
Tru1I TTAA 2 cut(s) 378, 462
Tru9I TTAA 2 cut(s) 378, 462
TscAI CASTG 2 cut(s) 536, 668
TseI GCWGC 2 cut(s) 454, 566
TspDTI ATGAA 4 cut(s) 57, 366, 401, 701
TspRI CASTG 2 cut(s) 536, 668
XmnI GAANNNNTTC 2 cut(s) 608, 692
XspI CTAG 2 cut(s) 158, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.