FvH4_1g28180

Basic leucine zipper and W2 domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
20010326 .. 20010948
623 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28180.t1

Sequence Viewer

Length: 363 bp
ATGCCAATTTTCAGCAAGGAAGGGCTAGTGGCCTTGGTTGAATACAATGGAAAGAAGATTTTCGAGGTGAAGCTTCAGGATATTAAATCTGCTTTGACAACCCAGATAACAGAGGAAACTGATGTATCTGAAGTCATAGAAACGGTGAAGCAGCGCATTAAAGATGCCAAATTGCCAGATATTGAGGTTGTGCGTATCCTATGTGATGTCATTATGGATGCTGTGCAGTGGTCTGGTAAGAACCAACAACAGAATGCTAATGCTGCTCTTCGCCAGGTGAAAACATGGGCGCAGCTGTTGAATGCCTTCTGCACCAATGGGAAGCTTGAGCTGGAACTGATATACAAAGTTCATATTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

5.84

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 59, 150
AgsI TTSAA 2 cut(s) 41, 301
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 4 cut(s) 73, 295, 325, 331
AluI AGCT 4 cut(s) 73, 295, 325, 331
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 3 cut(s) 151, 263, 292
Asp700I GAANNNNTTC 2 cut(s) 59, 305
AspLEI GCGC 2 cut(s) 156, 292
AsuHPI GGTGA 3 cut(s) 79, 157, 289
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BbvI GCAGC 3 cut(s) 163, 250, 304
BciT130I CCWGG 1 cut(s) 275
BciVI GTATCC 1 cut(s) 206
BfaI CTAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 3 cut(s) 152, 264, 293
BlsI GCNGC 3 cut(s) 153, 265, 294
Bme1390I CCNGG 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 2 cut(s) 154, 208
BpuEI CTTGAG 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 163, 250, 304
BsgI GTGCAG 2 cut(s) 245, 295
BshFI GGCC 1 cut(s) 32
BsmI GAATGC 2 cut(s) 259, 307
BsnI GGCC 1 cut(s) 32
BspANI GGCC 1 cut(s) 32
BspQI GCTCTTC 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 273
BstF5I GGATG 1 cut(s) 223
BstHHI GCGC 2 cut(s) 156, 292
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstV1I GCAGC 3 cut(s) 163, 250, 304
BsuI GTATCC 1 cut(s) 206
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 233
CfoI GCGC 2 cut(s) 156, 292
CviAII CATG 1 cut(s) 285
CviJI RGCY 6 cut(s) 25, 32, 73, 295, 325, 331
CviKI_1 RGCY 6 cut(s) 25, 32, 73, 295, 325, 331
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 33
Eco57I CTGAAG 2 cut(s) 59, 150
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 288
FaiI YATR 6 cut(s) 137, 202, 215, 286, 343, 354
FatI CATG 1 cut(s) 284
Fnu4HI GCNGC 3 cut(s) 152, 264, 293
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 3 cut(s) 152, 264, 293
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 155, 291
GluI GCNGC 3 cut(s) 152, 264, 293
HaeIII GGCC 1 cut(s) 32
HhaI GCGC 2 cut(s) 156, 292
Hin1II CATG 1 cut(s) 288
Hin6I GCGC 2 cut(s) 154, 290
HinP1I GCGC 2 cut(s) 154, 290
HindIII AAGCTT 2 cut(s) 71, 323
HphI GGTGA 3 cut(s) 79, 157, 289
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 14, 316
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 226, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
Hsp92II CATG 1 cut(s) 288
HspAI GCGC 2 cut(s) 154, 290
LguI GCTCTTC 1 cut(s) 273
LpnPI CCDG 7 cut(s) 62, 116, 189, 219, 260, 287, 317
Lsp1109I GCAGC 3 cut(s) 163, 250, 304
LweI GCATC 2 cut(s) 154, 208
MaeI CTAG 1 cut(s) 26
MboII GAAGA 2 cut(s) 67, 260
MluCI AATT 2 cut(s) 6, 170
MnlI CCTC 3 cut(s) 58, 106, 178
MroXI GAANNNNTTC 2 cut(s) 59, 305
MseI TTAA 2 cut(s) 84, 159
MspA1I CMGCKG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 2 cut(s) 259, 307
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 263
NlaIII CATG 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 273
PctI GAATGC 2 cut(s) 259, 307
PdmI GAANNNNTTC 2 cut(s) 59, 305
PkrI GCNGC 3 cut(s) 153, 265, 294
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PvuII CAGCTG 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 84, 159
SatI GCNGC 3 cut(s) 152, 264, 293
ScrFI CCNGG 1 cut(s) 275
SetI ASST 7 cut(s) 69, 75, 189, 279, 297, 327, 333
SfaNI GCATC 2 cut(s) 154, 208
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 2 cut(s) 6, 170
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 63
TasI AATT 2 cut(s) 6, 170
Tru1I TTAA 2 cut(s) 84, 159
Tru9I TTAA 2 cut(s) 84, 159
TscAI CASTG 1 cut(s) 233
TseI GCWGC 3 cut(s) 151, 263, 292
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 1 cut(s) 233
XmnI GAANNNNTTC 2 cut(s) 59, 305
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.