Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008739

Physical Location & Seq

Genomic Coordinates Reverse (-)

24361032 .. 24362054

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTGTTCATTAGAGAAACGTGATCGTCTTTTCATACTAAAACTCACCGGCGACGGCGAACACCGTCTAAACCCAACCTTACTCGACTCTCTCCGCTCCACCATCAACCAAATCCGATCAGATCCATCATTTTCACAATCAGTACTCATCACAACATCAGATGGTAAATTCTTCTCCAACGGCTACGATCTCGCTTTAGCCGAGTCAAATCCTTCTCTCTCTGTTGTAATGGACGCAAAACTTAGATCCTTAGTCGCCGATCTAATCTCTCTTCCTATGCCAACAATCGCCGCCGTCACAGGTCACGCTTCCGCCGCGGGATGTATTTTAGCGATGAGTCATGATTATGTATTGATGCGTCGTGATAGAGGTTTTTTGTATATGAGTGAATTGGATATTGAGTTGATAGTTCCGGCGTGGTTTATGGCTGTTATTAGGGGTAAGATTGGTTCTCCGGCGGCCAGAAGGGATGTGATGTTGACGGCGGCGAAAGTGACGGCGGATGTGGGTGTTAAGATGGGGATTGTTGATTCGGCGTATGGTAGTGCGGCGGAGACGGTTGAAGCCGCCATTAAGTTAGGTGAGGAGATTGTTCAGAGAGGTGGTGATGGACACGTGTATGGTAAGATGAGAGAGAGTCTTTTAAGAGAGGTTCTTATCCATACGATTGGTGAATATGAGAGTGGTTCAAGTGTGGTGCGTAGCACTGGATCTAAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ECH_1

Protein Analysis

240

Amino Acids

25.91

Weight (kDa)

6.22

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	23 - 201	7.4e-23	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65520
fragaria_vesca	FvH4_7g21971
malus_domestica	MD01G1124100.v1.1 MD01G1124200.v1.1 MD07G1194300.v1.1
prunus_persica	Prupe.2G231700_v2.0.a1
pyrus_communis	pycom01g15060 pycom01g15070 pycom07g18310
rosa_chinensis	RchiOBHm_Chr1g0366311 RchiOBHm_Chr1g0366321
rosa_laevigata	RLG00000027352 RLG00000027353
rosa_multiflora	Rmu_ssc0000250.1_g000002 Rmu_ssc0000250.1_g000004
rosa_roxburghii	Rroxscaffold_4G00290000
rosa_rugosa	Rorug01G0328900
rosa_samantha	Rh1AG337000 Rh1AG337100 Rh1BG298600 Rh1CG313900 Rh1DG330100
rosa_wichuraiana	Rw1G029880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	96
AccII	CGCG	1 cut(s)	317
AclWI	GGATC	3 cut(s)	116, 240, 718
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	616
AfaI	GTAC	1 cut(s)	144
AflIII	ACRYGT	2 cut(s)	613, 615
AgsI	TTSAA	2 cut(s)	563, 690
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	3 cut(s)	116, 240, 718
AoxI	GGCC	1 cut(s)	459
ApoI	RAATTY	1 cut(s)	167
AsuHPI	GGTGA	4 cut(s)	37, 593, 617, 683
BbrPI	CACGTG	1 cut(s)	616
BccI	CCATC	5 cut(s)	110, 133, 155, 511, 602
BceAI	ACGGC	5 cut(s)	70, 196, 278, 498, 513
BcoDI	GTCTC	1 cut(s)	548
BisI	GCNGC	6 cut(s)	291, 315, 459, 486, 549, 567
BlsI	GCNGC	6 cut(s)	292, 316, 460, 487, 550, 568
BmcAI	AGTACT	1 cut(s)	144
BmsI	GCATC	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	712
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	3 cut(s)	326, 475, 508
BseNI	ACTGG	1 cut(s)	712
BseRI	GAGGAG	1 cut(s)	599
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	461
BsiSI	CCGG	3 cut(s)	48, 413, 455
BsmAI	GTCTC	1 cut(s)	548
BsmBI	CGTCTC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	461
Bsp143I	GATC	7 cut(s)	22, 116, 121, 187, 245, 259, 710
BspANI	GGCC	1 cut(s)	461
BspFNI	CGCG	1 cut(s)	317
BspHI	TCATGA	1 cut(s)	340
BspPI	GGATC	3 cut(s)	116, 240, 718
BsrBI	CCGCTC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	712
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	7 cut(s)	22, 116, 121, 187, 245, 259, 710
Bst4CI	ACNGT	2 cut(s)	65, 559
Bst6I	CTCTTC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	616
BstDEI	CTNAG	2 cut(s)	242, 250
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	326, 475, 508
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	7 cut(s)	25, 119, 124, 190, 248, 262, 713
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	7 cut(s)	22, 116, 121, 187, 245, 259, 710
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstUI	CGCG	1 cut(s)	317
BstX2I	RGATCY	3 cut(s)	121, 245, 710
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstYI	RGATCY	3 cut(s)	121, 245, 710
BsuRI	GGCC	1 cut(s)	461
BtgI	CCRYGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	347
BtsCI	GGATG	3 cut(s)	326, 475, 508
BtsIMutI	CAGTG	1 cut(s)	705
CciI	TCATGA	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	47
Cfr42I	CCGCGG	1 cut(s)	318
CseI	GACGC	2 cut(s)	242, 347
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	5 cut(s)	183, 200, 428, 461, 566
CviKI_1	RGCY	5 cut(s)	183, 200, 428, 461, 566
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	2 cut(s)	242, 250
DpnI	GATC	7 cut(s)	24, 118, 123, 189, 247, 261, 712
DpnII	GATC	7 cut(s)	22, 116, 121, 187, 245, 259, 710
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	3 cut(s)	301, 515, 566
Eco72I	CACGTG	1 cut(s)	616
Esp3I	CGTCTC	1 cut(s)	548
FaeI	CATG	1 cut(s)	344
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	6 cut(s)	291, 315, 459, 486, 549, 567
FokI	GGATG	3 cut(s)	333, 482, 515
Fsp4HI	GCNGC	6 cut(s)	291, 315, 459, 486, 549, 567
GluI	GCNGC	6 cut(s)	291, 315, 459, 486, 549, 567
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	3 cut(s)	48, 413, 455
HgaI	GACGC	2 cut(s)	242, 347
Hin1II	CATG	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	5 cut(s)	86, 203, 337, 530, 637
HpaII	CCGG	3 cut(s)	48, 413, 455
HphI	GGTGA	4 cut(s)	37, 593, 617, 683
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	4 cut(s)	116, 121, 160, 597
Hpy188III	TCNNGA	2 cut(s)	341, 362
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	2 cut(s)	56, 363
HpyAV	CCTTC	2 cut(s)	222, 459
HpyCH4III	ACNGT	2 cut(s)	65, 559
HpyCH4IV	ACGT	2 cut(s)	19, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	2 cut(s)	242, 250
HpySE526I	ACGT	2 cut(s)	19, 615
Hsp92II	CATG	1 cut(s)	344
KspI	CCGCGG	1 cut(s)	318
Kzo9I	GATC	7 cut(s)	22, 116, 121, 187, 245, 259, 710
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	6 cut(s)	61, 285, 426, 468, 475, 693
LweI	GCATC	1 cut(s)	345
MaeII	ACGT	2 cut(s)	19, 615
MaeIII	GTNAC	3 cut(s)	295, 302, 493
MalI	GATC	7 cut(s)	24, 118, 123, 189, 247, 261, 712
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	7 cut(s)	22, 116, 121, 187, 245, 259, 710
MboII	GAAGA	2 cut(s)	163, 263
MflI	RGATCY	3 cut(s)	121, 245, 710
MluCI	AATT	2 cut(s)	167, 389
MlyI	GAGTC	4 cut(s)	80, 212, 346, 646
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	362, 577, 593, 643
MseI	TTAA	3 cut(s)	513, 573, 644
MslI	CAYNNNNRTG	2 cut(s)	345, 618
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	3 cut(s)	48, 413, 455
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	7 cut(s)	22, 116, 121, 187, 245, 259, 710
NlaIII	CATG	1 cut(s)	344
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	3 cut(s)	295, 302, 493
PagI	TCATGA	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	530
PkrI	GCNGC	6 cut(s)	292, 316, 460, 487, 550, 568
PleI	GAGTC	4 cut(s)	80, 211, 345, 645
PmaCI	CACGTG	1 cut(s)	616
PmlI	CACGTG	1 cut(s)	616
PpsI	GAGTC	4 cut(s)	80, 211, 345, 645
Ppu21I	YACGTR	1 cut(s)	616
PspCI	CACGTG	1 cut(s)	616
PsrI	GAACNNNNNNTAC	2 cut(s)	433, 465
PsuI	RGATCY	3 cut(s)	121, 245, 710
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	2 cut(s)	345, 618
SacII	CCGCGG	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	513, 573, 644
SatI	GCNGC	6 cut(s)	291, 315, 459, 486, 549, 567
Sau3AI	GATC	7 cut(s)	22, 116, 121, 187, 245, 259, 710
ScaI	AGTACT	1 cut(s)	144
SchI	GAGTC	4 cut(s)	80, 212, 346, 646
SetI	ASST	8 cut(s)	22, 80, 304, 373, 583, 604, 618, 654
SfaNI	GCATC	1 cut(s)	345
Sfr303I	CCGCGG	1 cut(s)	318
SgrAI	CRCCGGYG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	318
SmiMI	CAYNNNNRTG	2 cut(s)	345, 618
Sse9I	AATT	2 cut(s)	167, 389
TaaI	ACNGT	2 cut(s)	65, 559
TaiI	ACGT	2 cut(s)	22, 618
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	167, 389
TatI	WGTACW	1 cut(s)	142
TauI	GCSGC	6 cut(s)	293, 317, 461, 488, 551, 569
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	3 cut(s)	513, 573, 644
Tru9I	TTAA	3 cut(s)	513, 573, 644
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	3 cut(s)	295, 302, 493
Tsp45I	GTSAC	3 cut(s)	295, 302, 493
TspDTI	ATGAA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	712
XapI	RAATTY	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.